Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 4.6e-121 438.0 231 100.0
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.4e-101 373.2 223 86.1
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 7.7e-100 367.5 235 84.3
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 5.5e-90 334.7 231 77.5
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.1e-89 332.8 231 77.1
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 1.5e-87 326.6 235 75.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 7.7e-84 314.3 231 74.0
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 7.7e-84 314.3 231 73.6
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 7.7e-84 314.3 231 72.7
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.0e-83 313.9 234 73.1
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.7e-83 313.2 233 72.1
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 5.0e-83 311.6 235 72.8
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 6.5e-83 311.2 217 75.6
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.5e-82 310.1 234 72.2
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.5e-82 310.1 230 73.0
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 2.1e-81 306.2 235 71.9
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 2.8e-81 305.8 231 72.3
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.8e-80 303.1 226 71.2
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 2.3e-80 302.8 227 70.5
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 2.3e-80 302.8 225 72.9
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 3.0e-80 302.4 236 71.2
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 3.4e-79 298.9 233 70.4
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 9.8e-79 297.4 250 65.6
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.3e-78 297.0 251 65.7
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.7e-78 296.6 231 68.0
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 2.2e-78 296.2 231 70.1
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 3.7e-78 295.4 251 64.9
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 3.7e-78 295.4 251 64.1
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 4.9e-78 295.0 230 68.3
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.1e-77 293.9 230 68.7
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 2.4e-77 292.7 232 70.7
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 2.4e-77 292.7 251 64.9
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.1e-77 292.0 251 64.5
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 5.4e-77 291.6 248 65.7
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 7.0e-77 291.2 231 69.3
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 3.5e-76 288.9 227 69.2
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 3.5e-76 288.9 236 68.2
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 3.5e-76 288.9 236 68.2
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 3.5e-76 288.9 231 69.3
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 4.5e-76 288.5 229 66.8
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 5.9e-76 288.1 226 69.0
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.0e-75 287.3 233 67.8
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.0e-75 287.3 215 72.6
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 3.8e-75 285.4 234 65.4
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 3.8e-75 285.4 227 68.3
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.0e-75 285.0 234 68.4
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.1e-74 283.9 231 66.7
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 1.1e-74 283.9 234 68.4
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 1.9e-74 283.1 201 74.6
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.9e-74 283.1 238 67.6
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 4.3e-74 282.0 227 67.8
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 4.3e-74 282.0 226 67.7
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.6e-74 281.6 234 67.9
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.6e-74 281.6 233 67.4
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.3e-74 281.2 234 67.5
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 9.5e-74 280.8 231 64.5
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.2e-73 280.4 198 75.3
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 1.6e-73 280.0 235 67.2
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 2.8e-73 279.3 224 66.1
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 2.8e-73 279.3 232 67.2
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 2.8e-73 279.3 224 68.3
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 3.6e-73 278.9 252 62.3
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 4.7e-73 278.5 234 65.0
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 6.1e-73 278.1 234 67.1
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 3.0e-72 275.8 239 63.6
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 8.9e-72 274.2 233 64.8
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-71 273.9 219 69.4
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 2.6e-71 272.7 235 65.5
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 7.5e-71 271.2 235 65.1
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 2.9e-70 269.2 235 62.6
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 3.7e-70 268.9 235 62.6
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 3.7e-70 268.9 239 62.8
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 1.1e-69 267.3 245 61.2
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.1e-69 267.3 235 64.3
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 3.2e-69 265.8 224 64.3
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 9.2e-69 264.2 200 70.0
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 1.7e-67 260.0 261 57.5
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 2.3e-67 259.6 216 66.2
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 3.0e-67 259.2 253 60.5
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 3.0e-67 259.2 200 70.5
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 3.9e-67 258.8 234 62.4
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 5.0e-67 258.5 245 58.8
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 6.6e-67 258.1 198 70.2
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 6.6e-67 258.1 260 56.5
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 1.5e-66 256.9 230 60.9
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 2.5e-66 256.1 223 65.5
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 3.1e-64 249.2 156 80.1
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 5.2e-64 248.4 214 63.6
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 8.9e-64 247.7 207 66.2
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 2.6e-63 246.1 201 65.2
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.1e-61 240.7 178 71.3
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 1.0e-59 234.2 228 61.0
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 7.3e-58 228.0 202 61.9
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.2e-54 216.5 195 60.0
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.7e-54 215.7 153 70.6
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.4e-45 186.4 231 48.9
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 5.4e-45 185.3 194 55.2
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 2.1e-44 183.3 232 49.6
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.1e-44 183.3 237 46.8
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.3e-43 179.9 223 50.7
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 7.3e-42 174.9 160 60.6
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 5.8e-39 165.2 185 50.3
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.4e-37 160.6 209 48.3
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.4e-37 160.6 220 45.9
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.4e-37 159.8 158 54.4
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 6.6e-35 151.8 165 49.1
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 5.6e-34 148.7 112 66.1
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.5e-31 139.0 95 71.6
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 9.9e-31 137.9 155 47.1
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.3e-22 110.9 110 56.4
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 8.4e-22 108.2 157 44.6
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 2.5e-21 106.7 155 45.8
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.2e-20 104.4 103 58.3
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.6e-20 104.0 116 45.7
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 7.9e-12 75.1 154 33.8
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.5e-10 70.9 61 59.0
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 4.3e-10 69.3 60 61.7
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.4e-10 68.6 61 59.0
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.4e-10 68.6 61 59.0
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.8e-09 66.6 61 57.4
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 2.0e-07 60.5 36 75.0
Gohir.D01G074900 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.7e-07 58.5 58 51.7


User provided reference genes

Program Settings