Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.2e-46 189.5 95 100.0
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.0e-26 121.7 74 78.4
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 3.0e-26 121.7 74 78.4
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.2e-25 119.8 74 77.0
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.2e-25 119.8 74 77.0
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.5e-25 119.4 90 67.8
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.5e-25 119.4 90 67.8
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 2.0e-25 119.0 74 77.0
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.0e-25 119.0 74 75.7
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 2.6e-25 118.6 62 85.5
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 4.8e-24 114.4 74 74.3
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 4.8e-24 114.4 65 80.0
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 6.3e-24 114.0 85 63.5
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-23 112.5 61 82.0
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-23 112.5 61 82.0
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-23 112.5 61 82.0
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.4e-23 112.1 59 84.7
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.4e-23 112.1 73 74.0
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 3.1e-23 111.7 59 83.1
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.1e-23 111.7 59 83.1
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 3.1e-23 111.7 58 84.5
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 3.1e-23 111.7 58 84.5
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.1e-23 111.7 55 89.1
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 4.1e-23 111.3 62 77.4
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 5.3e-23 110.9 73 74.0
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 5.3e-23 110.9 58 82.8
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 5.3e-23 110.9 59 81.4
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 7.0e-23 110.5 57 84.2
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 7.0e-23 110.5 59 81.4
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 7.0e-23 110.5 62 77.4
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 9.1e-23 110.2 59 79.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 9.1e-23 110.2 57 84.2
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 9.1e-23 110.2 57 84.2
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 9.1e-23 110.2 57 84.2
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 9.1e-23 110.2 56 85.7
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 9.1e-23 110.2 59 79.7
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.2e-22 109.8 62 72.6
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.2e-22 109.8 59 79.7
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.6e-22 109.4 59 76.3
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.6e-22 109.4 60 78.3
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.6e-22 109.4 58 81.0
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.0e-22 109.0 74 68.9
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.0e-22 109.0 74 68.9
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.0e-22 109.0 61 73.8
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.7e-22 108.6 56 85.7
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 2.7e-22 108.6 74 68.9
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.5e-22 108.2 59 79.7
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 3.5e-22 108.2 59 79.7
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 4.5e-22 107.8 59 79.7
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.5e-22 107.8 74 67.6
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.5e-22 107.8 74 68.9
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.5e-22 107.8 74 68.9
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 4.5e-22 107.8 58 79.3
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 4.5e-22 107.8 60 76.7
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 5.9e-22 107.5 58 79.3
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 5.9e-22 107.5 59 78.0
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 5.9e-22 107.5 59 78.0
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.0e-21 106.7 55 83.6
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.0e-21 106.7 55 83.6
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.0e-21 106.7 57 80.7
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.0e-21 106.7 74 66.2
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.0e-21 106.7 74 66.2
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.0e-21 106.7 57 80.7
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.3e-21 106.3 74 67.6
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.3e-21 106.3 60 75.0
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.3e-21 106.3 73 68.5
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.7e-21 105.9 61 77.0
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.7e-21 105.9 59 76.3
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.7e-21 105.9 73 65.8
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.7e-21 105.9 61 75.4
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 2.2e-21 105.5 59 74.6
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 2.2e-21 105.5 59 76.3
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 2.2e-21 105.5 58 75.9
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.9e-21 105.1 59 78.0
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 2.9e-21 105.1 59 74.6
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 2.9e-21 105.1 59 76.3
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 2.9e-21 105.1 59 76.3
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 2.9e-21 105.1 59 74.6
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 5.0e-21 104.4 57 78.9
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 6.5e-21 104.0 59 74.6
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 6.5e-21 104.0 59 76.3
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.1e-20 103.2 63 74.6
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.5e-20 102.8 59 72.9
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.5e-20 102.8 60 78.3
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.5e-20 102.8 60 78.3
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.5e-20 102.8 60 78.3
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 2.5e-20 102.1 58 74.1
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 3.2e-20 101.7 59 74.6
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.2e-20 101.7 60 73.3
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 7.2e-20 100.5 57 77.2
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.2e-19 99.8 73 61.6
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.6e-19 99.4 55 80.0
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.6e-19 99.4 74 67.6
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.1e-19 99.0 59 67.8
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 2.1e-19 99.0 68 64.7
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.7e-19 98.6 59 71.2
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 8.0e-19 97.1 51 80.4
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.4e-18 96.3 74 62.2
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.4e-18 96.3 73 61.6
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.4e-18 96.3 73 58.9
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.4e-18 96.3 73 58.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 1.4e-18 96.3 59 72.9
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.8e-18 95.9 74 63.5
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 2.3e-18 95.5 50 82.0
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 2.3e-18 95.5 58 75.9
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.0e-18 95.1 73 65.8
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 4.0e-18 94.7 73 58.9
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 4.0e-18 94.7 68 66.2
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 5.2e-18 94.4 50 80.0
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 5.2e-18 94.4 51 80.4
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 6.8e-18 94.0 74 63.5
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 6.8e-18 94.0 59 69.5
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 1.2e-17 93.2 62 69.4
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.2e-17 93.2 71 64.8
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.2e-17 93.2 71 64.8
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.5e-17 92.8 60 68.3
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.5e-17 92.8 52 80.8
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 3.4e-17 91.7 58 70.7
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 4.4e-17 91.3 60 65.0
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 4.4e-17 91.3 70 64.3
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 5.7e-17 90.9 59 67.8
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 7.5e-17 90.5 74 60.8
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 9.8e-17 90.1 74 60.8
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 1.3e-16 89.7 88 50.0
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 1.3e-16 89.7 70 61.4
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.7e-16 89.4 45 82.2
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.7e-16 89.4 62 66.1
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.2e-16 89.0 58 69.0
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 2.2e-16 89.0 62 64.5
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 2.8e-16 88.6 59 67.8
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 3.7e-16 88.2 74 56.8
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.1e-15 86.7 59 66.1
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.4e-15 86.3 57 70.2
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 1.8e-15 85.9 56 60.7
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 3.1e-15 85.1 84 53.6
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 4.1e-15 84.7 93 47.3
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 5.4e-15 84.3 57 54.4
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.2e-14 83.2 83 53.0
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 5.9e-14 80.9 73 56.2
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 7.7e-14 80.5 62 62.9
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.3e-13 79.7 74 58.1
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.3e-13 79.7 59 64.4
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.3e-13 79.7 55 61.8
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 8.6e-13 77.0 59 57.6
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.9e-12 75.9 38 78.9
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 5.5e-12 74.3 39 76.9
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 9.5e-12 73.6 55 61.8
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 3.6e-11 71.6 36 80.6
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 4.7e-11 71.2 54 53.7
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 4.7e-11 71.2 35 82.9
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.0e-10 70.1 66 59.1
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.3e-10 68.9 38 78.9
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 5.2e-10 67.8 57 49.1
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 1.7e-08 62.8 62 43.5
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.1e-07 60.1 35 71.4
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 1.8e-07 59.3 45 64.4
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 2.4e-07 58.9 49 46.9


User provided reference genes

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