Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0363 Erigeron canadensis HOM05D003566 ORTHO05D018971 9.2e-43 176.4 84 100.0
ECA234G2985 Erigeron canadensis HOM05D003566 ORTHO05D005288 7.8e-18 93.6 50 92.0
arahy.Tifrunner.gnm1.ann1.9A4JNA Arachis hypogaea HOM05D003566 ORTHO05D005288 1.9e-16 89.0 50 86.0
arahy.Tifrunner.gnm1.ann1.VTP8RR Arachis hypogaea HOM05D003566 ORTHO05D005288 1.9e-16 89.0 50 86.0
ECA236G4962 Erigeron canadensis HOM05D003566 ORTHO05D005288 4.3e-16 87.8 50 84.0
Prupe.2G143700 Prunus persica HOM05D003566 ORTHO05D005288 7.3e-16 87.0 50 86.0
Actinidia12680 Actinidia chinensis HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 84.0
Ca_19954_v3 Cicer arietinum L. HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 84.0
ClCG05G002340 Citrullus lanatus HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 84.0
MELO3C006199.2 Cucumis melo HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 84.0
CsaV3_3G009780 Cucumis sativus L. HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 84.0
Migut.B01621 Erythranthe guttata HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 82.0
Lsat_1_v5_gn_7_9680 Lactuca sativa HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 82.0
Lalb_Chr07g0189911 Lupinus albus HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 86.0
Lalb_Chr12g0208181 Lupinus albus HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 86.0
Medtr4g024620 Medicago truncatula HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 84.0
Psat0s4330g0080 Pisum sativum HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 84.0
TPR.G31328 Trifolium pratense HOM05D003566 ORTHO05D005288 9.5e-16 86.7 50 84.0
MSTRG.4899 Avicennia marina HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 84.0
CSS0046086 Camellia sinensis var. sinensis HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 82.0
Dinv32368 Davidia involucrata HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 82.0
FAN01G1013 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 86.0
FAN03G0287 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 86.0
FAN06G2304 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 86.0
FAN06G3189 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 86.0
FAN10G1568 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 86.0
FAN10G2501 Fragaria x ananassa HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 86.0
Lsat_1_v5_gn_4_43461 Lactuca sativa HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 84.0
RcHm_v2.0_Chr1g0349971 Rosa chinensis HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 86.0
Sed0009137 Sechium edule HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 82.0
Sed0010249 Sechium edule HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 84.0
unitig_749.g14378 Utricularia gibba HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 82.0
unitig_76.g29084 Utricularia gibba HOM05D003566 ORTHO05D005288 1.2e-15 86.3 50 82.0
ECA234G2802 Erigeron canadensis HOM05D003566 ORTHO05D007485 1.6e-15 85.9 50 86.0
Rhsim07G0028700 Rhododendron simsii HOM05D003566 ORTHO05D005288 1.6e-15 85.9 50 82.0
Solyc01g091190.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 1.6e-15 85.9 50 82.0
Sopen01g036940 Solanum pennellii HOM05D003566 ORTHO05D005288 1.6e-15 85.9 50 82.0
PGSC0003DMG400026006 Solanum tuberosum HOM05D003566 ORTHO05D005288 1.6e-15 85.9 50 82.0
SGA_v2.0_scaffold153G36998 Striga asiatica HOM05D003566 ORTHO05D005288 1.6e-15 85.9 50 82.0
Thecc.01G378400 Theobroma cacao HOM05D003566 ORTHO05D005288 1.6e-15 85.9 50 82.0
unitig_26.g8900 Utricularia gibba HOM05D003566 ORTHO05D005288 1.6e-15 85.9 50 82.0
MSTRG.17176 Avicennia marina HOM05D003566 ORTHO05D005288 2.1e-15 85.5 50 80.0
Cc02_g24040 Coffea canephora HOM05D003566 ORTHO05D005288 2.1e-15 85.5 50 82.0
Dinv43695 Davidia involucrata HOM05D003566 ORTHO05D005288 2.1e-15 85.5 50 84.0
HanXRQChr04g0122731 Helianthus annuus HOM05D003566 ORTHO05D005288 2.1e-15 85.5 50 82.0
MD02G1207300 Malus domestica HOM05D003566 ORTHO05D005288 2.1e-15 85.5 50 84.0
MD07G1119600 Malus domestica HOM05D003566 ORTHO05D005288 2.1e-15 85.5 50 84.0
Gohir.D12G104500 Gossypium hirsutum HOM05D003566 ORTHO05D005288 2.8e-15 85.1 50 82.0
Gorai.008G113600 Gossypium raimondii HOM05D003566 ORTHO05D005288 2.8e-15 85.1 50 82.0
DCAR_008553 Daucus carota HOM05D003566 ORTHO05D005288 3.6e-15 84.7 50 82.0
FvH4_7g11530 Fragaria vesca HOM05D003566 ORTHO05D005288 3.6e-15 84.7 50 84.0
Lj3g0026165 Lotus japonicus HOM05D003566 ORTHO05D005288 3.6e-15 84.7 50 84.0
Oeu011923.1 Olea europaea HOM05D003566 ORTHO05D005288 3.6e-15 84.7 50 82.0
Oeu055501.1 Olea europaea HOM05D003566 ORTHO05D005288 3.6e-15 84.7 50 82.0
SalBow5G0834 Salvia bowleyana HOM05D003566 ORTHO05D005288 3.6e-15 84.7 50 82.0
TAR374G0275 Trochodendron aralioides HOM05D003566 ORTHO05D005288 3.6e-15 84.7 50 84.0
Glyma.03G027400 Glycine max HOM05D003566 ORTHO05D005288 4.7e-15 84.3 50 84.0
Hma1.2p1_0301F.1_g118610 Hydrangea macrophylla HOM05D003566 ORTHO05D005288 4.7e-15 84.3 50 84.0
Lj9A568G56 Lonicera japonica HOM05D003566 ORTHO05D005288 4.7e-15 84.3 50 80.0
Cpa.g.sc18.106 Carica papaya HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 84.0
Duzib138G1163 Durio zibethinus HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 80.0
Duzib138G1849 Durio zibethinus HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 80.0
Glyma.01G139600 Glycine max HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 82.0
Gohir.A12G101500 Gossypium hirsutum HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 82.0
Rhsim01G0149300 Rhododendron simsii HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 84.0
vmacro13413 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 80.0
vmacro21022 Vaccinium macrocarpon HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 84.0
VMungo0331G1999 Vigna mungo HOM05D003566 ORTHO05D005288 6.2e-15 84.0 50 82.0
Gohir.A07G146300 Gossypium hirsutum HOM05D003566 ORTHO05D005288 8.1e-15 83.6 50 80.0
Gohir.D07G152400 Gossypium hirsutum HOM05D003566 ORTHO05D005288 8.1e-15 83.6 50 80.0
MBI04_g30227_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D005288 8.1e-15 83.6 50 82.0
MBI04_g40966_MAGBIO Magnolia biondii HOM05D003566 ORTHO05D018971 8.1e-15 83.6 50 82.0
Nitab4.5_0000457g0110 Nicotiana tabacum HOM05D003566 ORTHO05D005288 8.1e-15 83.6 50 80.0
Nitab4.5_0005272g0040 Nicotiana tabacum HOM05D003566 ORTHO05D005288 8.1e-15 83.6 50 80.0
SGA_v2.0_scaffold95G28906 Striga asiatica HOM05D003566 ORTHO05D005288 8.1e-15 83.6 50 80.0
Thhalv10001404m.g Eutrema salsugineum HOM05D003566 ORTHO05D005288 1.1e-14 83.2 50 82.0
HanXRQChr16g0520001 Helianthus annuus HOM05D003566 ORTHO05D005288 1.1e-14 83.2 50 82.0
GSVIVG01027670001 Vitis vinifera HOM05D003566 ORTHO05D005288 1.1e-14 83.2 50 82.0
Aa31LG10G15010 Aethionema arabicum HOM05D003566 ORTHO05D005288 1.4e-14 82.8 50 80.0
Gorai.001G174400 Gossypium raimondii HOM05D003566 ORTHO05D005288 1.4e-14 82.8 50 80.0
Nn1g01139 Nelumbo nucifera HOM05D003566 ORTHO05D005288 1.4e-14 82.8 50 80.0
GSVIVG01027673001 Vitis vinifera HOM05D003566 ORTHO05D005288 1.4e-14 82.8 50 82.0
Aqoxy7G00661 Aquilegia oxysepala HOM05D003566 ORTHO05D005288 1.8e-14 82.4 50 82.0
COL.COLO4_12529 Corchorus olitorius HOM05D003566 ORTHO05D005288 1.8e-14 82.4 50 78.0
Duzib133G0428 Durio zibethinus HOM05D003566 ORTHO05D005288 1.8e-14 82.4 50 78.0
Phvul.010G082200 Phaseolus vulgaris HOM05D003566 ORTHO05D005288 1.8e-14 82.4 50 80.0
Psat7g227000 Pisum sativum HOM05D003566 ORTHO05D018971 1.8e-14 82.4 50 82.0
HPP92_020661 Vanilla planifolia HOM05D003566 ORTHO05D005288 1.8e-14 82.4 50 82.0
AL1G55650 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
AL4G44400 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
AT1G48860 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
BcaB01g03274 Brassica carinata HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
BcaC01g05142 Brassica carinata HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
A03p25160 Brassica napus HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
A04p33720 Brassica napus HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
C03p30000 Brassica napus HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
BolC3t15347H Brassica oleracea HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
BraA03t11716Z Brassica rapa HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
BraA04t18834Z Brassica rapa HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
Carub.0004s2793 Capsella rubella HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
CARHR140500 Cardamine hirsuta HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
Sp4g27320 Schrenkiella parvula HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
THA.LOC104817242 Tarenaya hassleriana HOM05D003566 ORTHO05D005288 2.4e-14 82.0 50 80.0
CANSAT56G0647 Cannabis sativa HOM05D003566 ORTHO05D005288 3.1e-14 81.6 50 80.0
CANSAT56G3470 Cannabis sativa HOM05D003566 ORTHO05D005288 3.1e-14 81.6 50 80.0
Ciclev10019734m.g Citrus clementina HOM05D003566 ORTHO05D005288 3.1e-14 81.6 50 78.0
Eucgr.D02465 Eucalyptus grandis HOM05D003566 ORTHO05D005288 3.1e-14 81.6 50 80.0
Sc23g0003670 Simmondsia chinensis HOM05D003566 ORTHO05D005288 3.1e-14 81.6 50 80.0
CAN.G388.31 Capsicum annuum HOM05D003566 ORTHO05D005288 4.0e-14 81.3 50 78.0
CiPaw.01G263300 Carya illinoinensis HOM05D003566 ORTHO05D005288 4.0e-14 81.3 50 78.0
AUR62004195 Chenopodium quinoa HOM05D003566 ORTHO05D005288 4.0e-14 81.3 50 78.0
Nitab4.5_0003912g0050 Nicotiana tabacum HOM05D003566 ORTHO05D005288 4.0e-14 81.3 50 78.0
Peaxi162Scf00013g03114 Petunia axillaris HOM05D003566 ORTHO05D005288 4.0e-14 81.3 50 78.0
Peaxi162Scf00959g00022 Petunia axillaris HOM05D003566 ORTHO05D005288 4.0e-14 81.3 50 78.0
Solyc05g050980.3 Solanum lycopersicum HOM05D003566 ORTHO05D005288 4.0e-14 81.3 50 78.0
PGSC0003DMG400007018 Solanum tuberosum HOM05D003566 ORTHO05D005288 4.0e-14 81.3 50 78.0
AT2G45300 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 5.2e-14 80.9 50 78.0
Cfa001747 Carpinus fangiana HOM05D003566 ORTHO05D005288 5.2e-14 80.9 50 78.0
CDE04G0743 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 5.2e-14 80.9 50 76.0
CDE12G0626 Ceratophyllum demersum HOM05D003566 ORTHO05D005288 5.2e-14 80.9 50 76.0
Sp5g02490 Schrenkiella parvula HOM05D003566 ORTHO05D005288 5.2e-14 80.9 50 78.0
Sopen05g029450 Solanum pennellii HOM05D003566 ORTHO05D005288 5.2e-14 80.9 50 76.0
C04p71450 Brassica napus HOM05D003566 ORTHO05D005288 6.8e-14 80.5 50 78.0
Lj7C530T15 Lonicera japonica HOM05D003566 ORTHO05D005288 6.8e-14 80.5 50 78.0
QL08p052721 Quercus lobata HOM05D003566 ORTHO05D005288 6.8e-14 80.5 50 78.0
EL10Ac1g00874 Beta vulgaris HOM05D003566 ORTHO05D005288 8.9e-14 80.1 50 78.0
BolC4t28653H Brassica oleracea HOM05D003566 ORTHO05D005288 8.9e-14 80.1 50 78.0
Hund17028 Selenicereus undatus HOM05D003566 ORTHO05D005288 8.9e-14 80.1 50 78.0
Zm00001eb378020 Zea mays HOM05D003566 ORTHO05D005288 8.9e-14 80.1 50 80.0
Os06g0133900 Oryza sativa ssp. japonica HOM05D003566 ORTHO05D005288 1.2e-13 79.7 50 80.0
Ah.05g174400 Amaranthus hybridus HOM05D003566 ORTHO05D005288 2.0e-13 79.0 50 76.0
PSO782G1824 Papaver somniferum HOM05D003566 ORTHO05D005288 2.0e-13 79.0 50 74.0
PSO832G3659 Papaver somniferum HOM05D003566 ORTHO05D005288 2.0e-13 79.0 50 74.0
AUR62013650 Chenopodium quinoa HOM05D003566 ORTHO05D005288 2.6e-13 78.6 50 76.0
PGR004G2250 Punica granatum HOM05D003566 ORTHO05D005288 2.6e-13 78.6 50 76.0
CARHR171150 Cardamine hirsuta HOM05D003566 ORTHO05D005288 3.4e-13 78.2 50 78.0
AagrBONN_evm.TU.Sc2ySwM_117.2264 Anthoceros agrestis HOM05D003566 ORTHO05D005288 4.4e-13 77.8 50 72.0
Psat0s2394g0040 Pisum sativum HOM05D003566 ORTHO05D018971 9.9e-13 76.6 50 78.0
Manes.01G266800 Manihot esculenta HOM05D003566 ORTHO05D005288 1.3e-12 76.3 50 78.0
Manes.05G046900 Manihot esculenta HOM05D003566 ORTHO05D005288 1.7e-12 75.9 50 80.0
QL08p052732 Quercus lobata HOM05D003566 ORTHO05D005288 1.7e-12 75.9 50 72.0
TWI59G0119 Tripterygium wilfordii HOM05D003566 ORTHO05D005288 2.2e-12 75.5 50 78.0
TWI14G0817 Tripterygium wilfordii HOM05D003566 ORTHO05D005288 6.4e-12 73.9 50 78.0
ATR0757G160 Amborella trichopoda HOM05D003566 ORTHO05D005288 1.1e-11 73.2 50 70.0
Sabra14G0047900 Salix brachista HOM05D003566 ORTHO05D005288 1.1e-11 73.2 50 78.0
Potri.002G146400 Populus trichocarpa HOM05D003566 ORTHO05D005288 1.4e-11 72.8 50 76.0
Sabra02G0114000 Salix brachista HOM05D003566 ORTHO05D005288 1.4e-11 72.8 50 78.0
Gohir.D12G104550 Gossypium hirsutum HOM05D003566 ORTHO05D005288 1.9e-11 72.4 50 68.0
Potri.014G068300 Populus trichocarpa HOM05D003566 ORTHO05D005288 2.4e-11 72.0 50 76.0
Actinidia12250 Actinidia chinensis HOM05D003566 ORTHO05D005288 3.2e-11 71.6 50 68.0
CBR_g26047 Chara braunii HOM05D003566 ORTHO05D005288 5.4e-11 70.9 50 66.0
SMO137G0336 Selaginella moellendorffii HOM05D003566 ORTHO05D005288 9.2e-11 70.1 50 64.0
Gorai.008G113800 Gossypium raimondii HOM05D003566 ORTHO05D005288 1.7e-09 65.9 50 64.0
Mapoly0034s0104 Marchantia polymorpha HOM05D003566 ORTHO05D005288 1.7e-09 65.9 50 68.0
MD14G1236200 Malus domestica HOM05D003566 ORTHO05D018971 6.6e-09 63.9 43 79.1
Cre03.g181300 Chlamydomonas reinhardtii HOM05D003566 ORTHO05D005288 1.1e-08 63.2 53 60.4
Pp3c23_11380 Physcomitrium patens HOM05D003566 ORTHO05D005288 3.3e-08 61.6 51 60.8
Actinidia31398 Actinidia chinensis HOM05D003566 ORTHO05D005288 7.3e-08 60.5 40 70.0
BcaB02g08943 Brassica carinata HOM05D003566 ORTHO05D023212 1.6e-07 59.3 38 73.7
AUR62038008 Chenopodium quinoa HOM05D003566 ORTHO05D018971 2.8e-07 58.5 52 61.5
PRCOL_00003336 Prasinoderma coloniale HOM05D003566 ORTHO05D005288 2.8e-07 58.5 50 56.0
MD02G1207400 Malus domestica HOM05D003566 ORTHO05D018971 5.2e-06 54.3 92 39.1


User provided reference genes

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