Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 6.7e-221 770.4 394 100.0
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 1.2e-97 360.9 412 55.6
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 4.2e-90 335.9 392 54.1
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 5.1e-35 152.9 357 37.8
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 2.6e-31 140.6 325 37.8
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 1.7e-30 137.9 374 33.7
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 6.4e-30 136.0 368 32.6
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 2.4e-29 134.0 369 33.1
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 9.3e-29 132.1 334 35.9
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 9.3e-29 132.1 333 34.2
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.6e-28 131.3 358 33.5
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 3.5e-28 130.2 328 34.1
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 1.0e-27 128.6 421 31.4
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.3e-27 128.3 386 32.4
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 5.1e-27 126.3 323 33.7
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 8.7e-27 125.6 327 33.9
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 1.1e-26 125.2 390 31.3
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 5.6e-26 122.9 405 30.6
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 7.4e-26 122.5 372 32.8
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 7.4e-26 122.5 339 34.5
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 4.8e-25 119.8 384 29.9
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 8.1e-25 119.0 327 33.0
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 1.8e-24 117.9 324 34.3
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 1.8e-24 117.9 370 32.4
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.4e-24 117.5 329 32.2
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 3.1e-24 117.1 372 29.8
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 4.0e-24 116.7 383 29.8
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 2.0e-23 114.4 368 32.1
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 3.4e-23 113.6 328 31.7
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 4.5e-23 113.2 383 31.3
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 1.3e-22 111.7 377 30.0
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 1.3e-22 111.7 373 29.2
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 1.7e-22 111.3 393 31.8
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 2.2e-22 110.9 333 31.2
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 2.2e-22 110.9 363 32.5
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 3.8e-22 110.2 220 36.8
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 4.9e-22 109.8 372 32.5
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.9e-21 107.8 359 31.5
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 3.2e-21 107.1 391 29.9
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.2e-21 106.7 341 30.8
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 5.5e-21 106.3 392 27.6
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 1.6e-20 104.8 352 32.1
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.6e-20 104.8 333 31.5
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 2.7e-20 104.0 404 30.9
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 7.9e-20 102.4 356 28.9
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 7.9e-20 102.4 391 29.7
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 7.9e-20 102.4 216 34.7
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 1.0e-19 102.1 380 29.7
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.8e-19 101.3 354 31.1
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 3.0e-19 100.5 359 28.1
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 3.0e-19 100.5 380 28.2
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 5.1e-19 99.8 375 29.9
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 6.7e-19 99.4 319 31.0
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 8.7e-19 99.0 348 28.7
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.9e-18 97.8 356 30.6
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 2.5e-18 97.4 357 29.7
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 3.3e-18 97.1 409 29.8
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 5.6e-18 96.3 339 30.4
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 7.4e-18 95.9 407 28.7
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 9.6e-18 95.5 361 29.4
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.3e-17 95.1 355 30.7
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.6e-17 94.7 384 28.9
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 1.6e-17 94.7 392 28.3
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 2.8e-17 94.0 384 27.6
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 2.8e-17 94.0 381 27.6
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 3.7e-17 93.6 356 29.8
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 4.8e-17 93.2 410 26.1
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 1.4e-16 91.7 395 27.8
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 1.8e-16 91.3 400 26.0
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.4e-16 90.9 388 28.1
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 4.0e-16 90.1 411 28.7
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 4.0e-16 90.1 381 27.3
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 4.0e-16 90.1 400 27.8
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 9.0e-16 89.0 354 28.0
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 9.0e-16 89.0 343 28.9
SalBow3G1388 Salvia bowleyana HOM05D002977 ORTHO05D003225 1.2e-15 88.6 319 29.5
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 1.2e-15 88.6 332 30.4
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 7.6e-15 85.9 440 27.7
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.3e-14 85.1 384 26.3
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 4.9e-14 83.2 389 27.0
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 6.5e-14 82.8 423 26.7
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 6.5e-14 82.8 356 28.7
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 8.4e-14 82.4 339 27.1
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.1e-13 82.0 383 27.2
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 1.1e-13 82.0 389 27.2
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 1.4e-13 81.6 425 28.0
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 1.4e-13 81.6 230 30.0
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 2.5e-13 80.9 420 27.1
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 2.5e-13 80.9 208 28.4
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 5.5e-13 79.7 383 26.9
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 7.1e-13 79.3 321 33.3
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 7.1e-13 79.3 230 27.4
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 9.3e-13 79.0 398 27.6
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 9.3e-13 79.0 332 25.9
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 1.6e-12 78.2 290 26.2
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 2.1e-12 77.8 424 27.6
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 2.1e-12 77.8 424 27.6
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 2.7e-12 77.4 353 26.6
AT4G00770 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 7.9e-12 75.9 407 26.5
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 7.9e-12 75.9 353 26.6
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 1.3e-11 75.1 286 24.5
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 2.3e-11 74.3 227 26.0
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 3.0e-11 73.9 331 24.8
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 3.9e-11 73.6 278 27.3
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 3.9e-11 73.6 220 26.8
Hma1.2p1_0371F.1_g138190 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 5.1e-11 73.2 138 29.0
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 6.7e-11 72.8 380 25.3
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 6.7e-11 72.8 379 26.9
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 8.7e-11 72.4 438 27.2
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 8.7e-11 72.4 418 25.1
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 8.7e-11 72.4 353 23.5
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 8.7e-11 72.4 350 24.0
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 1.9e-10 71.2 324 28.4
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 2.5e-10 70.9 353 24.6
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 3.3e-10 70.5 413 23.2
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 4.3e-10 70.1 337 24.3
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 5.7e-10 69.7 448 27.0
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 5.7e-10 69.7 413 25.7
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 5.7e-10 69.7 382 25.4
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 7.4e-10 69.3 409 25.9
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 7.4e-10 69.3 300 23.0
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 9.7e-10 68.9 416 25.7
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 9.7e-10 68.9 347 27.4
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.6e-09 68.2 337 27.9
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.6e-09 68.2 222 28.4
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 2.2e-09 67.8 410 23.9
Eucgr.E00527 Eucalyptus grandis HOM05D002977 ORTHO05D003225 2.8e-09 67.4 139 29.5
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 3.7e-09 67.0 287 29.6
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 3.7e-09 67.0 347 26.5
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 8.2e-09 65.9 389 23.7
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 8.2e-09 65.9 300 25.7
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 1.1e-08 65.5 393 23.2
arahy.Tifrunner.gnm1.ann1.ELA92E Arachis hypogaea HOM05D002977 ORTHO05D003225 1.4e-08 65.1 216 27.8
Lj2C196G7 Lonicera japonica HOM05D002977 ORTHO05D003225 1.4e-08 65.1 109 29.4
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 1.4e-08 65.1 304 23.0
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.8e-08 64.7 352 22.2
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 2.4e-08 64.3 282 27.0
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 4.1e-08 63.5 339 25.7
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 5.3e-08 63.2 310 25.5
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 6.9e-08 62.8 342 29.8
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 6.9e-08 62.8 357 25.5
Hund16963 Selenicereus undatus HOM05D002977 ORTHO05D003225 6.9e-08 62.8 368 25.8
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 1.5e-07 61.6 397 27.0
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.4e-07 60.5 277 25.3
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 3.4e-07 60.5 277 25.3
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 4.5e-07 60.1 354 26.3
arahy.Tifrunner.gnm1.ann1.BQI3IB Arachis hypogaea HOM05D002977 ORTHO05D003225 5.9e-07 59.7 218 26.1
Aa31LG5G240 Aethionema arabicum HOM05D002977 ORTHO05D003225 7.7e-07 59.3 410 25.1
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 7.7e-07 59.3 131 30.5
Glyma.01G215900 Glycine max HOM05D002977 ORTHO05D003225 1.7e-06 58.2 221 26.2
EL10Ac1g00967 Beta vulgaris HOM05D002977 ORTHO05D003225 2.2e-06 57.8 359 29.5
Cpa.g.sc74.83 Carica papaya HOM05D002977 ORTHO05D003225 2.2e-06 57.8 178 27.0
DCAR_006762 Daucus carota HOM05D002977 ORTHO05D003225 2.9e-06 57.4 399 23.8
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 2.9e-06 57.4 314 24.5
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 8.5e-06 55.8 287 26.1


User provided reference genes

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