Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 2.3e-99 365.5 182 100.0
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 4.3e-98 361.3 182 97.8
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 2.6e-95 352.1 179 96.6
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 6.5e-94 347.4 182 93.4
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 6.5e-94 347.4 182 93.4
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 2.5e-93 345.5 182 93.4
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 5.5e-93 344.4 182 92.9
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.9
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.9
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.9
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.9
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 2.1e-92 342.4 182 92.9
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 92.3
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 91.8
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 92.3
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 91.2
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 91.2
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 91.2
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 91.2
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 92.9
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 92.9
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 91.2
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 91.2
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 90.7
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 90.1
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 91.8
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 90.7
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 89.6
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 91.2
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 91.2
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 90.7
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 90.7
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 90.7
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 90.7
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 89.6
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 8.8e-91 337.0 179 92.7
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 89.6
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 8.8e-91 337.0 181 89.5
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 2.0e-90 335.9 178 92.7
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.0e-90 335.9 177 92.1
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 89.6
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 2.6e-90 335.5 179 91.1
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 3.3e-90 335.1 182 88.5
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 89.0
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 90.1
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 9.7e-90 333.6 180 90.0
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 90.7
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.3e-89 333.2 182 87.9
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 1.7e-89 332.8 194 86.1
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 89.6
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 87.4
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 2.8e-89 332.0 181 89.5
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 89.0
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 3.7e-89 331.6 182 87.4
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 4.8e-89 331.3 176 91.5
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 4.8e-89 331.3 182 88.5
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 6.3e-89 330.9 182 88.5
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 6.3e-89 330.9 180 88.3
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 8.2e-89 330.5 182 87.4
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 1.4e-88 329.7 176 91.5
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 3.1e-88 328.6 178 90.4
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 9.1e-88 327.0 178 89.9
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.2e-87 326.6 172 93.6
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 2.6e-87 325.5 182 87.4
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 3.5e-87 325.1 182 87.4
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 3.5e-87 325.1 182 87.4
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 7.7e-87 323.9 182 86.8
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 7.7e-87 323.9 182 86.8
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.0e-86 323.6 176 89.8
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.3e-86 323.2 178 88.8
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.7e-86 322.8 176 90.9
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.8
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.8
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.2e-86 322.4 173 91.3
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 5.0e-86 321.2 173 89.6
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 85.7
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 6.5e-86 320.9 182 86.3
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 8.5e-86 320.5 172 91.3
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 85.7
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.1e-85 320.1 202 79.7
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 7.2e-85 317.4 176 87.5
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 2.1e-84 315.8 182 86.8
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 2.1e-84 315.8 197 80.2
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 3.6e-84 315.1 177 86.4
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 8.0e-84 313.9 182 85.2
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 1.8e-83 312.8 178 87.6
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 4.0e-83 311.6 174 86.8
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 5.2e-83 311.2 173 87.3
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 5.7e-82 307.8 174 85.6
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 5.7e-82 307.8 174 85.6
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 7.5e-82 307.4 174 85.6
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 1.7e-81 306.2 174 85.1
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 1.4e-80 303.1 208 75.0
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.2e-79 300.1 182 84.1
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 1.9e-77 292.7 183 81.4
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 1.6e-76 289.7 152 90.8
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 8.0e-76 287.3 182 78.6
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 4.0e-75 285.0 155 91.0
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.5e-74 283.1 155 89.0
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 3.4e-74 282.0 182 76.9
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.3e-73 280.0 151 91.4
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.7e-73 279.6 177 78.5
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 4.8e-73 278.1 155 87.1
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 4.1e-72 275.0 149 87.2
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.1e-69 266.9 155 84.5
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.0e-66 256.1 181 74.6
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.3e-65 253.4 139 86.3
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 2.4e-64 249.2 184 72.8
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 4.5e-63 245.0 128 90.6
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 7.7e-63 244.2 130 90.0
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 2.0e-58 229.6 125 87.2
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 2.0e-58 229.6 184 61.4
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 7.0e-56 221.1 177 58.2
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.9e-53 213.0 155 71.6
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 7.3e-53 211.1 185 56.8
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 5.2e-51 204.9 105 93.3
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 8.9e-51 204.1 105 93.3
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 3.7e-49 198.7 105 91.4
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 4.9e-49 198.4 105 91.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 3.0e-46 189.1 101 89.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 3.6e-44 182.2 179 58.7
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.5e-42 176.8 100 84.0
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.7e-41 172.2 92 91.3
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 6.4e-41 171.4 154 61.7
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 2.4e-40 169.5 92 88.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.6e-39 166.8 86 91.9
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 2.8e-36 156.0 91 75.8
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.2e-33 146.4 127 56.7
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 5.4e-32 141.7 90 76.7
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.1e-32 141.4 92 79.3
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.1e-27 127.5 66 89.4
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 6.4e-25 118.2 77 79.2
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.7e-23 112.8 70 80.0
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 7.6e-18 94.7 48 89.6
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 7.4e-13 78.2 49 77.6
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 9.6e-13 77.8 58 65.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.6e-12 77.0 182 31.3
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 8.1e-12 74.7 182 30.2
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 9.0e-11 71.2 182 27.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.2e-10 70.9 181 28.7
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.5e-10 70.5 182 28.0
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.0e-10 70.1 180 32.2
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 2.0e-10 70.1 182 28.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.0e-10 70.1 182 28.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.9e-08 63.5 198 24.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 9.3e-08 61.2 137 30.7


User provided reference genes

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