Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 2323.5 1180 100.0
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1867.8 1187 81.6
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 0.0e+00 1796.9 1192 78.7
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 0.0e+00 1604.0 1218 68.4
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1585.5 1221 66.7
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1557.3 1218 66.8
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 0.0e+00 1529.2 1213 65.9
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 0.0e+00 1526.5 1217 65.2
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 0.0e+00 1511.5 1203 65.0
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 0.0e+00 1511.5 1250 64.8
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1504.2 1215 64.9
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1503.0 1217 63.6
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1500.7 1220 64.8
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1499.6 1217 63.8
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1493.4 1208 63.8
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 0.0e+00 1492.2 1214 64.8
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 0.0e+00 1491.1 1217 64.6
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 0.0e+00 1491.1 1205 65.3
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1490.7 1208 63.8
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 0.0e+00 1483.8 1217 63.9
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1483.4 1215 64.4
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 0.0e+00 1482.2 1218 64.0
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 0.0e+00 1480.7 1212 64.5
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 0.0e+00 1478.8 1177 65.4
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 0.0e+00 1476.8 1213 64.1
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 0.0e+00 1476.1 1219 63.8
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 0.0e+00 1473.8 1211 63.8
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 0.0e+00 1468.8 1211 63.6
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1466.1 1213 63.6
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 0.0e+00 1464.1 1216 63.7
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1461.4 1213 63.1
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1461.0 1214 63.3
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 0.0e+00 1460.7 1217 63.8
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1458.7 1217 63.3
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1457.6 1273 62.1
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 0.0e+00 1455.3 1214 63.4
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 0.0e+00 1449.5 1205 63.9
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 0.0e+00 1449.1 1217 62.6
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 0.0e+00 1448.3 1218 63.2
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1432.9 1297 60.3
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1431.4 1221 61.5
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 0.0e+00 1429.5 1113 66.7
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1426.8 1208 61.8
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 0.0e+00 1424.8 1263 61.4
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1424.1 1211 61.7
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1423.7 1211 61.6
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 0.0e+00 1422.5 1211 61.7
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 0.0e+00 1422.1 1220 62.2
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 0.0e+00 1421.4 1213 60.9
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 0.0e+00 1420.6 1211 61.4
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1420.6 1229 61.2
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 0.0e+00 1419.4 1217 61.6
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 0.0e+00 1419.4 1221 61.0
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1417.9 1208 61.5
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1417.5 1223 61.3
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1416.0 1222 60.6
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 0.0e+00 1413.7 1216 62.3
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1413.7 1216 62.3
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1413.3 1243 60.3
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 0.0e+00 1407.1 1214 61.0
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1407.1 1234 60.3
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 0.0e+00 1406.7 1217 60.8
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 0.0e+00 1404.4 1219 61.6
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 0.0e+00 1404.4 1207 61.9
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1403.7 1215 62.1
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1402.9 1224 60.5
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1402.9 1220 60.7
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1402.1 1223 60.2
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 0.0e+00 1401.0 1220 60.7
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1399.4 1218 60.3
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1397.1 1216 60.1
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1395.9 1219 60.0
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1395.2 1213 60.4
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1395.2 1223 60.0
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 0.0e+00 1394.8 1181 62.9
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 0.0e+00 1392.1 1217 61.5
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 0.0e+00 1390.9 1222 59.6
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 0.0e+00 1390.9 1220 60.9
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 0.0e+00 1390.6 1219 60.0
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1388.2 1211 60.1
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1384.4 1217 59.7
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1378.6 1215 59.9
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1376.3 1219 58.9
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1375.9 1224 59.8
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 0.0e+00 1372.5 1217 61.1
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1366.7 1157 63.3
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1364.7 1220 58.8
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 0.0e+00 1360.1 1221 59.4
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 0.0e+00 1359.4 1221 59.9
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1350.5 1222 58.7
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1347.0 1217 58.5
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1344.7 1222 58.4
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1329.3 1235 57.2
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 0.0e+00 1326.6 1170 59.7
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 0.0e+00 1325.1 1296 57.1
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1325.1 1244 58.0
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 0.0e+00 1301.2 1221 57.4
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 0.0e+00 1284.6 1124 60.1
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 0.0e+00 1282.7 1291 56.4
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1259.6 1115 59.9
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1243.4 1156 57.0
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 0.0e+00 1230.3 1221 54.1
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 0.0e+00 1229.5 1218 55.2
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1223.8 1131 57.4
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1196.0 1087 58.1
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 0.0e+00 1182.2 1212 53.6
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 0.0e+00 1181.8 1020 60.4
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1169.8 1210 54.2
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 0.0e+00 1160.2 1289 50.1
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1095.1 926 59.7
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 2.7e-310 1068.9 1029 56.1
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 5.3e-306 1054.7 1049 56.1
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 2.9e-283 979.2 1129 48.6
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 2.4e-282 976.1 1319 43.3
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.3e-272 943.7 1364 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 3.7e-267 925.6 1275 42.8
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 2.1e-265 919.8 1227 46.3
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 6.0e-257 891.7 663 67.9
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 6.5e-227 792.0 1185 42.8
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.8e-205 720.7 782 50.6
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 5.9e-204 715.7 764 51.2
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 1.9e-202 710.7 855 46.0
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 4.8e-190 669.5 886 43.7
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 6.8e-184 649.0 1186 38.7
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 5.2e-176 622.9 1268 32.3
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 5.0e-171 606.3 1494 31.5
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 2.8e-161 573.9 611 53.8
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 2.2e-142 511.1 515 52.4
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 1.2e-140 505.4 761 42.8
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 3.3e-138 497.3 772 42.1
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 2.7e-132 477.6 578 47.4
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 8.2e-89 333.2 201 82.1
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 2.2e-81 308.5 180 84.4
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 3.1e-80 304.7 273 58.2
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 8.0e-76 290.0 417 47.7
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 6.8e-75 287.0 298 57.0
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 5.7e-74 283.9 303 53.1
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.0e-62 246.5 684 30.1
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 6.4e-57 227.3 165 71.5
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 2.7e-55 221.9 137 80.3
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 1.5e-53 216.1 289 46.4
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 8.0e-52 210.3 317 42.0
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 5.4e-48 197.6 291 39.9
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 1.3e-46 193.0 174 60.9
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 1.7e-38 166.0 152 55.9
SHI50190 Sapria himalayana HOM05D003993 ORTHO05D005336 2.3e-38 165.6 132 65.9
CDE05G2526 Ceratophyllum demersum HOM05D003993 ORTHO05D005336 1.9e-37 162.5 97 85.6
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 9.5e-37 160.2 221 44.8
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 4.7e-36 157.9 161 53.4
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 4.1e-32 144.8 110 66.4
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 8.9e-27 127.1 166 46.4
MBI18_g40553_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 8.4e-25 120.6 72 80.6
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 2.1e-23 115.9 130 50.8
VMungo1127G0084 Vigna mungo HOM05D003993 ORTHO05D005336 1.3e-22 113.2 68 77.9
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 4.8e-20 104.8 82 61.0
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 5.3e-19 101.3 131 42.7
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 2.1e-15 89.4 170 37.1
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 2.1e-15 89.4 77 50.6
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 2.3e-14 85.9 170 35.9
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 6.7e-14 84.3 71 57.7
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 6.7e-14 84.3 71 57.7
arahy.Tifrunner.gnm1.ann1.43HIPW Arachis hypogaea HOM05D003993 ORTHO05D005336 1.5e-13 83.2 53 73.6
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 1.5e-13 83.2 137 40.9
Gohir.A05G172101 Gossypium hirsutum HOM05D003993 ORTHO05D014907 5.6e-13 81.3 71 56.3
Gohir.A05G278766 Gossypium hirsutum HOM05D003993 ORTHO05D014907 5.6e-13 81.3 71 56.3
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 5.6e-13 81.3 71 56.3
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 1.3e-12 80.1 71 54.9
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 1.3e-12 80.1 62 64.5
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 2.8e-12 79.0 58 67.2
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 2.8e-12 79.0 53 69.8
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 1.1e-11 77.0 81 49.4
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 2.4e-11 75.9 53 69.8
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 3.1e-11 75.5 52 69.2
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 4.0e-11 75.1 53 69.8
arahy.Tifrunner.gnm1.ann1.N54FIB Arachis hypogaea HOM05D003993 ORTHO05D014907 2.0e-10 72.8 101 40.6
Gohir.A10G071633 Gossypium hirsutum HOM05D003993 ORTHO05D014907 3.2e-08 65.5 58 53.4
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.6e-07 63.2 77 44.2
C05p43480 Brassica napus HOM05D000001 ORTHO05D000003 5.1e-06 58.2 67 47.8


User provided reference genes

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