Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 5.0e-85 317.8 165 100.0
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 5.7e-81 304.3 165 95.2
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 5.7e-81 304.3 165 95.2
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 1.1e-79 300.1 163 94.5
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 3.8e-77 291.6 163 92.0
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.1e-76 290.0 163 90.8
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 3.2e-76 288.5 163 89.6
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 3.2e-76 288.5 163 90.8
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 3.6e-75 285.0 163 89.0
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 4.7e-75 284.6 163 87.7
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.4e-74 283.1 163 88.3
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.4e-74 283.1 163 88.3
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.4e-74 283.1 163 88.3
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.8e-74 282.7 163 89.0
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 2.3e-74 282.3 163 88.3
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 5.2e-74 281.2 163 87.7
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 5.2e-74 281.2 163 87.1
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 5.2e-74 281.2 163 88.3
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-74 280.4 163 85.9
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 8.8e-74 280.4 163 85.9
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 1.2e-73 280.0 163 87.1
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 2.0e-73 279.3 163 87.7
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 2.0e-73 279.3 163 87.1
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 2.0e-73 279.3 163 87.1
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 2.6e-73 278.9 163 85.9
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 2.6e-73 278.9 163 86.5
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 2.6e-73 278.9 163 85.3
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 2.6e-73 278.9 163 86.5
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.7e-73 277.7 163 84.7
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.7e-73 277.7 163 84.7
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.5e-73 277.3 163 84.7
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 9.8e-73 276.9 163 85.3
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.8e-73 276.9 163 84.7
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 1.7e-72 276.2 163 85.9
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 2.2e-72 275.8 163 84.7
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 2.8e-72 275.4 163 85.9
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 3.7e-72 275.0 163 84.7
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 4.9e-72 274.6 163 84.7
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 4.9e-72 274.6 164 83.5
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 4.9e-72 274.6 163 84.7
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 4.9e-72 274.6 163 84.7
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 8.3e-72 273.9 159 89.3
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 1.1e-71 273.5 163 84.7
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.1e-71 273.5 164 87.2
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 1.1e-71 273.5 163 84.0
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 1.4e-71 273.1 163 83.4
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.4e-71 273.1 162 84.6
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 2.4e-71 272.3 163 82.8
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.4e-71 272.3 163 83.4
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 3.1e-71 271.9 161 85.1
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 4.1e-71 271.6 163 82.2
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 4.1e-71 271.6 163 82.2
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 5.4e-71 271.2 163 83.4
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 7.0e-71 270.8 161 84.5
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 7.0e-71 270.8 163 82.8
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 9.2e-71 270.4 163 84.0
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 9.2e-71 270.4 161 83.9
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 1.2e-70 270.0 162 84.0
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.2e-70 270.0 163 82.2
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.2e-70 270.0 163 83.4
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 3.5e-70 268.5 163 81.0
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 3.5e-70 268.5 163 82.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.5e-70 268.1 163 84.0
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 4.5e-70 268.1 161 83.2
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 5.9e-70 267.7 163 82.8
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 1.3e-69 266.5 163 82.2
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 1.3e-69 266.5 162 83.3
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 1.7e-69 266.2 163 82.2
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 3.8e-69 265.0 163 80.4
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 8.6e-69 263.8 163 79.8
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 8.6e-69 263.8 163 81.6
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 8.6e-69 263.8 164 79.3
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 1.5e-68 263.1 163 81.6
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 1.5e-68 263.1 163 79.8
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 1.9e-68 262.7 162 81.5
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 1.9e-68 262.7 163 80.4
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 2.5e-68 262.3 162 81.5
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 2.5e-68 262.3 162 81.5
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 2.5e-68 262.3 163 81.6
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 3.3e-68 261.9 162 80.2
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 5.6e-68 261.2 163 80.4
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 9.5e-68 260.4 163 80.4
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.1e-67 259.2 163 79.1
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 2.8e-67 258.8 162 79.0
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 2.8e-67 258.8 162 79.0
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 3.6e-67 258.5 157 82.2
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 6.1e-67 257.7 163 79.1
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 6.1e-67 257.7 163 79.1
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 8.0e-67 257.3 163 81.0
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 8.0e-67 257.3 163 78.5
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 1.0e-66 256.9 162 77.8
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.0e-66 256.9 163 77.9
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.4e-66 256.5 163 79.1
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 1.8e-66 256.1 197 70.1
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 4.0e-66 255.0 165 77.6
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 4.0e-66 255.0 163 80.4
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 5.2e-66 254.6 162 79.0
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 8.9e-66 253.8 165 76.4
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.2e-65 253.4 163 78.5
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 1.2e-65 253.4 165 77.0
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 2.0e-65 252.7 165 75.8
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.6e-65 252.3 165 75.8
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 2.6e-65 252.3 165 76.4
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 4.4e-65 251.5 163 77.9
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 9.8e-65 250.4 165 75.2
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 9.8e-65 250.4 165 75.2
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 9.8e-65 250.4 163 77.3
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 1.3e-64 250.0 165 75.8
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 1.3e-64 250.0 159 79.2
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 2.2e-64 249.2 166 75.9
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 2.9e-64 248.8 163 76.1
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.9e-64 248.8 166 77.1
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 2.9e-64 248.8 166 75.9
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.4e-63 246.5 182 72.5
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.2e-63 243.8 163 79.1
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 1.6e-62 243.0 162 74.1
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 3.5e-62 241.9 162 74.1
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 5.9e-62 241.1 161 74.5
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 5.9e-62 241.1 186 70.4
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 1.0e-61 240.4 165 72.7
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.7e-61 239.6 163 78.5
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 3.0e-61 238.8 163 73.6
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 3.9e-61 238.4 163 71.8
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 1.8e-58 229.6 217 58.1
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 6.8e-58 227.6 163 69.9
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 8.9e-58 227.3 162 69.1
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 7.5e-57 224.2 163 69.9
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 9.8e-57 223.8 161 73.3
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.3e-56 223.4 160 73.1
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.7e-56 221.9 128 83.6
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 8.3e-56 220.7 162 67.9
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 2.0e-54 216.1 163 70.6
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.7e-54 215.7 157 66.9
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 1.0e-53 213.8 162 64.2
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 8.1e-51 204.1 123 80.5
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 4.4e-41 171.8 163 60.7
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 2.4e-39 166.0 165 52.1
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 5.1e-37 158.3 109 69.7
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 5.1e-37 158.3 109 69.7
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 7.3e-36 154.5 165 53.9
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 7.3e-36 154.5 165 53.9
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 2.2e-32 142.9 99 71.7
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 1.4e-31 140.2 141 56.0
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.6e-30 136.7 86 74.4
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 2.1e-30 136.3 128 54.7
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 3.0e-29 132.5 165 48.5
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 3.9e-29 132.1 80 80.0
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 1.1e-26 124.0 80 73.8
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 3.1e-26 122.5 85 71.8
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 2.7e-22 109.4 85 61.2
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 8.1e-19 97.8 66 72.7
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 1.3e-16 90.5 58 77.6
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 3.5e-14 82.4 52 82.7
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.9e-13 79.0 60 60.0
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 8.7e-13 77.8 69 66.7
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 3.3e-12 75.9 68 57.4
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 4.3e-12 75.5 59 69.5
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 1.3e-11 73.9 68 57.4
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 7.6e-09 64.7 40 75.0
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 4.9e-08 62.0 39 74.4
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 4.9e-08 62.0 39 74.4


User provided reference genes

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