Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 1.8e-218 762.3 387 100.0
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 2.7e-206 721.8 385 92.5
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 1.5e-204 716.1 387 92.2
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 1.9e-204 715.7 387 91.5
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 6.9e-194 680.6 387 86.6
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.7e-192 676.0 384 85.7
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 1.4e-191 672.9 387 85.3
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 2.4e-191 672.2 385 86.2
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 5.5e-191 671.0 385 86.0
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 4.6e-190 667.9 385 85.7
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 6.0e-190 667.5 387 84.2
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 1.0e-189 666.8 387 84.0
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 3.0e-189 665.2 385 84.4
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 3.9e-189 664.8 384 83.9
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 8.7e-189 663.7 387 84.0
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 3.3e-188 661.8 384 84.1
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 4.8e-187 657.9 384 83.1
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 6.2e-187 657.5 384 83.9
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-186 656.4 384 84.1
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 1.8e-186 656.0 379 85.0
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 2.0e-185 652.5 385 83.4
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 4.5e-185 651.4 383 82.8
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 7.6e-185 650.6 378 83.6
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 1.0e-184 650.2 387 81.9
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.0e-184 650.2 385 82.9
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.7e-184 649.4 387 82.2
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 2.9e-184 648.7 386 82.6
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 3.8e-184 648.3 378 82.8
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 6.5e-184 647.5 385 81.6
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 6.5e-184 647.5 377 83.3
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 8.4e-184 647.1 378 83.1
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.4e-183 646.4 384 83.3
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.4e-183 646.4 383 81.7
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 3.2e-183 645.2 385 82.6
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 7.1e-183 644.0 385 81.6
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 7.1e-183 644.0 385 81.6
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 7.1e-183 644.0 385 82.6
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 7.1e-183 644.0 383 81.7
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 7.1e-183 644.0 386 81.3
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 9.3e-183 643.7 396 81.1
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 9.3e-183 643.7 384 81.8
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 9.3e-183 643.7 383 82.0
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 1.2e-182 643.3 385 81.3
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 1.6e-182 642.9 382 80.6
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.6e-182 642.9 387 81.7
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.1e-182 642.5 369 84.8
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.1e-182 642.5 382 80.4
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 2.7e-182 642.1 385 81.8
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 2.7e-182 642.1 384 82.0
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 3.5e-182 641.7 396 80.8
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 6.0e-182 641.0 385 82.1
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 7.9e-182 640.6 385 81.8
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.0e-181 640.2 387 81.4
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.3e-181 639.8 385 80.8
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 1.8e-181 639.4 385 81.0
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.8e-181 639.4 384 81.2
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 2.3e-181 639.0 385 80.8
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 3.0e-181 638.6 385 80.8
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 3.0e-181 638.6 386 80.8
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.9e-181 638.3 385 80.5
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.9e-181 638.3 385 80.8
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 3.9e-181 638.3 385 80.8
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 3.9e-181 638.3 385 80.0
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 5.1e-181 637.9 385 79.2
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 6.7e-181 637.5 385 80.3
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 8.7e-181 637.1 387 79.6
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 8.7e-181 637.1 385 79.0
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.1e-180 636.7 385 80.5
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 1.5e-180 636.3 378 81.0
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.5e-180 636.3 385 80.5
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 1.9e-180 636.0 382 80.9
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 2.5e-180 635.6 383 80.9
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.5e-180 635.6 385 80.3
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 3.3e-180 635.2 380 80.0
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 3.3e-180 635.2 385 80.3
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 3.3e-180 635.2 383 80.9
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 3.3e-180 635.2 373 80.2
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 4.3e-180 634.8 385 80.5
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 5.7e-180 634.4 384 80.7
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 7.4e-180 634.0 385 80.0
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 7.4e-180 634.0 380 79.2
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 7.4e-180 634.0 385 80.0
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 9.7e-180 633.6 383 80.9
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.7e-179 631.7 372 80.6
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 3.7e-179 631.7 378 79.9
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 4.8e-179 631.3 387 79.8
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 6.3e-179 630.9 387 79.6
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 8.2e-179 630.6 437 73.7
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 1.4e-178 629.8 375 80.3
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.8e-178 629.4 387 79.3
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 3.1e-178 628.6 384 77.6
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 3.1e-178 628.6 384 79.4
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 4.1e-178 628.2 387 78.8
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.2e-177 626.7 387 78.6
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 1.5e-177 626.3 384 79.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.0e-177 625.9 385 79.2
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.6e-177 625.5 385 79.0
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 5.9e-177 624.4 385 78.7
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.0e-176 623.6 385 78.4
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 3.8e-176 621.7 374 80.5
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 3.7e-171 605.1 384 76.0
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 5.3e-170 601.3 378 76.5
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 6.9e-170 600.9 388 74.2
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 2.7e-166 589.0 389 72.2
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 3.0e-165 585.5 337 83.1
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.6e-158 562.0 356 75.3
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 4.1e-154 548.5 380 71.8
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 9.4e-151 537.3 384 68.8
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 7.0e-146 521.2 379 67.3
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.3e-144 516.9 286 85.7
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.5e-143 513.5 373 69.2
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.6e-142 508.8 380 67.1
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 8.0e-142 507.7 384 68.2
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 3.4e-140 502.3 345 75.1
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 5.0e-136 488.4 362 65.7
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.1e-135 487.3 385 60.8
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.0e-133 480.7 361 65.4
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 4.9e-131 471.9 387 64.3
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.1e-130 469.2 297 77.4
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 4.1e-130 468.8 357 65.0
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 9.8e-124 447.6 289 74.0
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 4.6e-121 438.7 276 75.7
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 2.4e-114 416.4 249 81.1
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.2e-113 414.1 385 57.1
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 5.6e-111 405.2 286 69.2
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 8.1e-110 401.4 258 75.2
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 8.3e-107 391.3 300 67.0
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 6.6e-104 381.7 256 73.4
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 8.9e-101 371.3 356 53.9
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.9e-99 365.5 249 75.5
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 5.1e-96 355.5 329 54.7
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 3.6e-94 349.4 212 80.7
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 1.1e-93 347.8 249 71.1
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 4.6e-89 332.4 234 72.6
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 6.2e-86 322.0 195 74.9
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.5e-84 317.4 226 73.9
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 7.1e-74 282.0 211 65.9
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 4.6e-73 279.3 174 77.6
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 2.8e-62 243.4 161 71.4
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 2.4e-61 240.4 353 41.1
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 2.2e-59 233.8 124 83.9
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 3.8e-59 233.0 161 69.6
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 6.1e-57 225.7 291 43.3
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 2.3e-56 223.8 137 80.3
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 2.2e-46 190.7 159 62.9
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 1.4e-37 161.4 113 77.9
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 2.2e-35 154.1 113 73.5
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.9e-34 151.0 112 69.6
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.6e-33 147.9 85 77.6
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 4.7e-33 146.4 92 77.2
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 6.5e-27 125.9 77 85.7
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 2.8e-22 110.5 86 66.3
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 8.3e-22 109.0 93 61.3
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 2.0e-20 104.4 117 52.1
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 4.2e-18 96.7 62 83.9
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 7.2e-18 95.9 62 82.3
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-16 91.7 68 72.1
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 1.3e-14 85.1 50 78.0
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.4e-13 81.6 58 58.6
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 9.5e-10 68.9 44 70.5
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 7.5e-07 59.3 220 24.5


User provided reference genes

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