Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0023 Erigeron canadensis HOM05D005255 ORTHO05D006276 0.0e+00 1237.2 619 100.0
HanXRQChr06g0176811 Helianthus annuus HOM05D005255 ORTHO05D006276 2.4e-241 839.0 621 70.9
Actinidia38145 Actinidia chinensis HOM05D005255 ORTHO05D006276 1.7e-202 709.9 663 57.5
Lsat_1_v5_gn_8_83080 Lactuca sativa HOM05D005255 ORTHO05D006276 9.0e-196 687.6 528 68.0
CSS0035930 Camellia sinensis var. sinensis HOM05D005255 ORTHO05D006276 3.4e-195 685.6 673 56.3
Sopen04g008740 Solanum pennellii HOM05D005255 ORTHO05D006276 9.6e-190 667.5 651 55.8
Solyc04g017650.4 Solanum lycopersicum HOM05D005255 ORTHO05D006276 1.3e-189 667.2 651 55.3
Lj1A1118T28 Lonicera japonica HOM05D005255 ORTHO05D006276 2.8e-189 666.0 550 61.8
CiPaw.09G042700 Carya illinoinensis HOM05D005255 ORTHO05D006276 3.7e-189 665.6 655 55.3
Migut.J01697 Erythranthe guttata HOM05D005255 ORTHO05D006276 5.3e-188 661.8 649 55.6
Cfa016749 Carpinus fangiana HOM05D005255 ORTHO05D006276 1.2e-187 660.6 648 54.0
Haze_19754 Corylus avellana HOM05D005255 ORTHO05D006276 1.5e-187 660.2 661 53.7
Prupe.7G049600 Prunus persica HOM05D005255 ORTHO05D006276 3.4e-187 659.1 672 53.3
Atru.chr1.1248 Acer truncatum HOM05D005255 ORTHO05D006276 1.3e-186 657.1 663 53.5
Rhsim04G0108300 Rhododendron simsii HOM05D005255 ORTHO05D006276 2.2e-186 656.4 663 55.4
Cc06_g18410 Coffea canephora HOM05D005255 ORTHO05D006276 1.1e-185 654.1 648 54.2
Dinv30292 Davidia involucrata HOM05D005255 ORTHO05D006276 6.1e-184 648.3 669 53.8
Lj1C1121T6 Lonicera japonica HOM05D005255 ORTHO05D006276 6.7e-183 644.8 526 62.5
SalBow6G4730 Salvia bowleyana HOM05D005255 ORTHO05D006276 1.1e-182 644.0 655 53.6
Thecc.05G144600 Theobroma cacao HOM05D005255 ORTHO05D006276 1.9e-182 643.3 649 53.5
TWI74G1492 Tripterygium wilfordii HOM05D005255 ORTHO05D006276 1.4e-180 637.1 624 54.3
DCAR_020535 Daucus carota HOM05D005255 ORTHO05D006276 5.3e-180 635.2 645 52.9
Oeu008184.2 Olea europaea HOM05D005255 ORTHO05D006276 6.9e-180 634.8 658 52.7
Duzib093G1389 Durio zibethinus HOM05D005255 ORTHO05D006276 9.1e-180 634.4 658 53.2
GSVIVG01033557001 Vitis vinifera HOM05D005255 ORTHO05D006276 2.9e-178 629.4 645 54.6
QL07p004453 Quercus lobata HOM05D005255 ORTHO05D006276 2.0e-174 616.7 610 54.9
Nn7g36447 Nelumbo nucifera HOM05D005255 ORTHO05D006276 5.7e-174 615.1 691 50.9
CAN.G1237.20 Capsicum annuum HOM05D005255 ORTHO05D006276 2.2e-173 613.2 613 54.5
Manes.09G016500 Manihot esculenta HOM05D005255 ORTHO05D006276 3.7e-173 612.5 681 51.0
Eucgr.A02293 Eucalyptus grandis HOM05D005255 ORTHO05D006276 6.3e-173 611.7 667 50.4
COL.COLO4_21290 Corchorus olitorius HOM05D005255 ORTHO05D006276 1.8e-172 610.1 653 51.3
CANSAT80G1558 Cannabis sativa HOM05D005255 ORTHO05D006276 6.9e-172 608.2 696 49.7
Manes.09G016721 Manihot esculenta HOM05D005255 ORTHO05D006276 2.6e-171 606.3 682 50.3
Nitab4.5_0005195g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 5.9e-171 605.1 657 52.2
Peaxi162Scf00130g01019 Petunia axillaris HOM05D005255 ORTHO05D006276 9.4e-169 597.8 649 51.2
RcHm_v2.0_Chr3g0484561 Rosa chinensis HOM05D005255 ORTHO05D006276 7.9e-168 594.7 628 51.1
VMungo1383G2357 Vigna mungo HOM05D005255 ORTHO05D006276 3.0e-167 592.8 633 50.9
Sabra06G0031000 Salix brachista HOM05D005255 ORTHO05D006276 2.0e-166 590.1 663 50.4
Phvul.001G128100 Phaseolus vulgaris HOM05D005255 ORTHO05D006276 9.7e-166 587.8 626 51.6
Ciclev10006800m.g Citrus clementina HOM05D005255 ORTHO05D006276 1.1e-164 584.3 635 52.3
PSO339G5261 Papaver somniferum HOM05D005255 ORTHO05D006276 1.1e-164 584.3 678 47.9
Glyma.03G132200 Glycine max HOM05D005255 ORTHO05D006276 2.4e-164 583.2 660 50.2
EL10Ac3g07169 Beta vulgaris HOM05D005255 ORTHO05D006276 7.0e-164 581.6 639 50.9
Psat3g075800 Pisum sativum HOM05D005255 ORTHO05D006276 3.8e-162 575.9 630 50.0
Hund24659 Selenicereus undatus HOM05D005255 ORTHO05D006276 8.5e-162 574.7 666 48.0
Lj1g0022872 Lotus japonicus HOM05D005255 ORTHO05D006276 1.5e-161 573.9 667 48.9
arahy.Tifrunner.gnm1.ann1.FQMP84 Arachis hypogaea HOM05D005255 ORTHO05D006276 1.9e-161 573.5 671 48.4
AUR62030394 Chenopodium quinoa HOM05D005255 ORTHO05D006276 1.9e-161 573.5 642 50.3
Lalb_Chr25g0287041 Lupinus albus HOM05D005255 ORTHO05D006276 2.5e-161 573.2 650 49.2
arahy.Tifrunner.gnm1.ann1.5V2BX3 Arachis hypogaea HOM05D005255 ORTHO05D006276 3.2e-161 572.8 667 48.4
Medtr7g090680 Medicago truncatula HOM05D005255 ORTHO05D006276 4.2e-161 572.4 648 48.5
Sed0023795 Sechium edule HOM05D005255 ORTHO05D006276 4.7e-160 568.9 601 51.4
ClCG04G003970 Citrullus lanatus HOM05D005255 ORTHO05D006276 1.8e-159 567.0 606 51.0
Glyma.19G134000 Glycine max HOM05D005255 ORTHO05D006276 2.3e-159 566.6 666 48.8
Nitab4.5_0011420g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 3.3e-158 562.8 712 46.6
PGR031G1801 Punica granatum HOM05D005255 ORTHO05D006276 5.7e-158 562.0 620 49.5
Aqoxy2G00272 Aquilegia oxysepala HOM05D005255 ORTHO05D006276 1.6e-155 553.9 708 45.3
TAR623G1148 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.6e-155 553.9 685 47.3
SGA_v2.0_scaffold105G30345 Striga asiatica HOM05D005255 ORTHO05D006276 2.0e-155 553.5 699 47.5
AUR62026140 Chenopodium quinoa HOM05D005255 ORTHO05D006276 7.7e-155 551.6 687 47.7
CANSAT80G0695 Cannabis sativa HOM05D005255 ORTHO05D006276 9.4e-153 544.7 592 50.3
CDE08G0636 Ceratophyllum demersum HOM05D005255 ORTHO05D006276 4.7e-152 542.3 633 48.3
Ah.13g076740 Amaranthus hybridus HOM05D005255 ORTHO05D006276 2.3e-151 540.0 648 46.0
THA.LOC104817056 Tarenaya hassleriana HOM05D005255 ORTHO05D006276 6.8e-151 538.5 641 48.7
Thhalv10016390m.g Eutrema salsugineum HOM05D005255 ORTHO05D006276 2.4e-148 530.0 627 45.9
Potri.006G045100 Populus trichocarpa HOM05D005255 ORTHO05D006276 2.7e-147 526.6 567 51.5
Aa31LG1G23460 Aethionema arabicum HOM05D005255 ORTHO05D006276 8.6e-146 521.5 633 45.5
TPR.G32740 Trifolium pratense HOM05D005255 ORTHO05D006276 1.9e-145 520.4 637 46.6
CARHR136560 Cardamine hirsuta HOM05D005255 ORTHO05D006276 9.5e-145 518.1 635 45.8
AT2G41450 Arabidopsis thaliana HOM05D005255 ORTHO05D006276 3.6e-144 516.2 640 44.5
MELO3C014208.2 Cucumis melo HOM05D005255 ORTHO05D006276 1.0e-143 514.6 595 48.7
MBI19_g17528_MAGBIO Magnolia biondii HOM05D005255 ORTHO05D006276 3.0e-143 513.1 740 43.6
Sp4g23710 Schrenkiella parvula HOM05D005255 ORTHO05D006276 5.2e-143 512.3 646 44.3
AL4G39520 Arabidopsis lyrata HOM05D005255 ORTHO05D006276 1.5e-142 510.8 628 45.2
Zm00001eb286800 Zea mays HOM05D005255 ORTHO05D006276 1.3e-141 507.7 623 45.3
C04p02730 Brassica napus HOM05D005255 ORTHO05D006276 2.3e-135 486.9 563 46.2
BolC4t21913H Brassica oleracea HOM05D005255 ORTHO05D006276 2.3e-135 486.9 563 46.2
BraA05t19224Z Brassica rapa HOM05D005255 ORTHO05D006276 6.8e-135 485.3 556 47.5
Carub.0004s2374 Capsella rubella HOM05D005255 ORTHO05D006276 1.2e-134 484.6 566 46.6
Os05g0376600 Oryza sativa ssp. japonica HOM05D005255 ORTHO05D006276 1.2e-134 484.6 623 44.9
BcaC02g12783 Brassica carinata HOM05D005255 ORTHO05D006276 4.4e-134 482.6 586 45.9
A05p02290 Brassica napus HOM05D005255 ORTHO05D006276 3.5e-131 473.0 582 45.5
Ca_08423_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.9e-129 467.2 532 48.1
VMungo1383G1524 Vigna mungo HOM05D005255 ORTHO05D006276 2.5e-129 466.8 560 47.9
ATR0721G141 Amborella trichopoda HOM05D005255 ORTHO05D006276 2.2e-125 453.8 787 37.5
TAR623G1440 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.4e-124 451.1 608 44.7
TAR624G0617 Trochodendron aralioides HOM05D005255 ORTHO05D006276 7.0e-124 448.7 518 48.5
HPP92_003251 Vanilla planifolia HOM05D005255 ORTHO05D006276 3.9e-122 443.0 542 45.9
FvH4_6g24820 Fragaria vesca HOM05D005255 ORTHO05D006276 1.7e-114 417.5 512 47.1
Cpa.g.sc120.15 Carica papaya HOM05D005255 ORTHO05D006276 9.6e-105 385.2 530 43.6
Sc13g0001470 Simmondsia chinensis HOM05D005255 ORTHO05D006276 1.3e-93 348.2 499 44.5
PGSC0003DMG400012725 Solanum tuberosum HOM05D005255 ORTHO05D006276 2.1e-91 340.9 304 57.9
FAN14G1086 Fragaria x ananassa HOM05D005255 ORTHO05D006276 5.8e-86 322.8 536 39.4
Nitab4.5_0000826g0020 Nicotiana tabacum HOM05D005255 ORTHO05D006276 1.9e-81 307.8 311 55.9
AagrBONN_evm.TU.Sc2ySwM_228.5074 Anthoceros agrestis HOM05D005255 ORTHO05D006276 3.4e-78 297.0 801 28.6
CsaV3_4G021950 Cucumis sativus L. HOM05D005255 ORTHO05D006276 4.3e-73 280.0 200 64.5
Pp3c8_2040 Physcomitrium patens HOM05D005255 ORTHO05D006276 9.0e-71 272.3 758 27.3
RcHm_v2.0_Chr3g0484121 Rosa chinensis HOM05D005255 ORTHO05D006276 2.6e-70 270.8 198 64.6
CAN.G1237.18 Capsicum annuum HOM05D005255 ORTHO05D006276 2.9e-69 267.3 492 36.2
MSTRG.6398 Avicennia marina HOM05D005255 ORTHO05D006276 3.7e-64 250.4 176 69.3
unitig_8.g3497 Utricularia gibba HOM05D005255 ORTHO05D006276 7.7e-62 242.7 228 54.4
Pp3c4_1630 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.0e-61 242.3 950 25.2
Pp3c4_1631 Physcomitrium patens HOM05D005255 ORTHO05D006276 1.0e-61 242.3 950 25.2
Mapoly0085s0026 Marchantia polymorpha HOM05D005255 ORTHO05D006276 8.5e-61 239.2 1080 23.9
SEGI_00937 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 5.9e-54 216.5 177 56.5
HPP92_003249 Vanilla planifolia HOM05D005255 ORTHO05D006276 1.9e-52 211.5 320 39.4
vmacro09038 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 2.6e-49 201.1 145 65.5
FAN02G3622 Fragaria x ananassa HOM05D005255 ORTHO05D006276 5.7e-49 199.9 362 39.5
MSTRG.6397 Avicennia marina HOM05D005255 ORTHO05D006276 1.7e-45 188.3 301 42.2
vmacro09037 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.7e-45 188.3 281 43.8
PGSC0003DMG400012726 Solanum tuberosum HOM05D005255 ORTHO05D006276 1.2e-43 182.2 179 52.5
Nitab4.5_0001618g0070 Nicotiana tabacum HOM05D005255 ORTHO05D006276 6.7e-42 176.4 124 70.2
unitig_8.g3496 Utricularia gibba HOM05D005255 ORTHO05D006276 1.5e-41 175.3 406 33.7
Sopen04g008710 Solanum pennellii HOM05D005255 ORTHO05D006276 2.0e-41 174.9 124 70.2
Lsat_1_v5_gn_8_83120 Lactuca sativa HOM05D005255 ORTHO05D006276 5.3e-39 166.8 184 52.2
RcHm_v2.0_Chr3g0484111 Rosa chinensis HOM05D005255 ORTHO05D006276 3.0e-34 151.0 183 43.7
SMO364G0001 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 2.8e-32 144.4 208 35.6
Ca_08424_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 5.0e-29 133.7 143 50.3
Ca_30365_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 5.0e-29 133.7 88 65.9
Ca_20730_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 3.3e-28 131.0 385 29.6
Lsat_1_v5_gn_5_6521 Lactuca sativa HOM05D005255 ORTHO05D006276 3.3e-28 131.0 92 68.5
TAR628G1157 Trochodendron aralioides HOM05D005255 ORTHO05D006276 1.8e-26 125.2 86 67.4
FAN14G4897 Fragaria x ananassa HOM05D005255 ORTHO05D006276 1.3e-24 119.0 137 48.9
Dinv30288 Davidia involucrata HOM05D007529 ORTHO05D007451 2.8e-24 117.9 173 42.2
vmacro09036 Vaccinium macrocarpon HOM05D005255 ORTHO05D006276 1.1e-23 115.9 80 68.8
SEGI_13590 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.0e-22 111.7 93 51.6
RcHm_v2.0_Chr1g0374991 Rosa chinensis HOM05D005255 ORTHO05D006276 1.0e-21 109.4 70 65.7
Nitab4.5_0000826g0030 Nicotiana tabacum HOM05D005255 ORTHO05D006276 2.1e-19 101.7 60 75.0
Sc24g0003990 Simmondsia chinensis HOM05D002556 ORTHO05D003153 4.7e-19 100.5 232 29.3
SEGI_06354 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 8.0e-19 99.8 69 65.2
SEGI_39771 Sequoiadendron giganteum HOM05D005255 ORTHO05D006276 8.0e-19 99.8 106 44.3
Ca_13718_v3 Cicer arietinum L. HOM05D005255 ORTHO05D006276 1.5e-17 95.5 197 35.5
Pp3c12_23820 Physcomitrium patens HOM05D005255 ORTHO05D006276 4.4e-17 94.0 75 56.0
CBR_g18722 Chara braunii HOM05D002556 ORTHO05D003153 1.3e-16 92.4 179 29.1
CAN.G1237.19 Capsicum annuum HOM05D005255 ORTHO05D006276 6.4e-16 90.1 63 69.8
PSO210G2558 Papaver somniferum HOM05D002556 ORTHO05D003153 1.4e-15 89.0 204 27.9
PSO447G0225 Papaver somniferum HOM05D002556 ORTHO05D003153 1.4e-15 89.0 179 30.7
SEGI_33554 Sequoiadendron giganteum HOM05D002556 ORTHO05D003153 4.1e-15 87.4 222 25.2
SGA_v2.0_scaffold11G05759 Striga asiatica HOM05D002556 ORTHO05D003153 5.4e-15 87.0 230 27.0
TAR624G0532 Trochodendron aralioides HOM05D005255 ORTHO05D006276 5.4e-15 87.0 59 64.4
Os01g0939300 Oryza sativa ssp. japonica HOM05D002556 ORTHO05D003153 4.6e-14 84.0 229 27.9
BolSC21t60285H Brassica oleracea HOM05D005255 ORTHO05D021741 7.8e-14 83.2 91 45.1
Haze_01041 Corylus avellana HOM05D002556 ORTHO05D003153 1.0e-13 82.8 246 23.6
Pp3c7_24750 Physcomitrium patens HOM05D002556 ORTHO05D003153 3.0e-13 81.3 227 23.8
Pp3c7_24754 Physcomitrium patens HOM05D002556 ORTHO05D003153 3.0e-13 81.3 227 23.8
Aqoxy2G03140 Aquilegia oxysepala HOM05D002556 ORTHO05D003153 1.5e-12 79.0 204 25.0
SMO364G0772 Selaginella moellendorffii HOM05D005255 ORTHO05D006276 4.3e-12 77.4 156 32.1
Pp3c11_4990 Physcomitrium patens HOM05D002556 ORTHO05D003153 9.5e-12 76.3 187 24.6
TWI59G0577 Tripterygium wilfordii HOM05D002556 ORTHO05D003153 9.5e-12 76.3 297 22.9
AL6G49810 Arabidopsis lyrata HOM05D002556 ORTHO05D003153 2.1e-11 75.1 194 26.3
AT4G03130 Arabidopsis thaliana HOM05D002556 ORTHO05D003153 2.8e-11 74.7 221 25.3
Lalb_Chr18g0047501 Lupinus albus HOM05D002556 ORTHO05D003153 2.8e-11 74.7 185 24.3
TWI59G0842 Tripterygium wilfordii HOM05D002556 ORTHO05D003153 3.6e-11 74.3 291 22.3
Rhsim04G0215200 Rhododendron simsii HOM05D002556 ORTHO05D003153 4.7e-11 73.9 179 26.8
PGR031G1073 Punica granatum HOM05D002556 ORTHO05D003153 8.0e-11 73.2 292 21.6
Oeu047907.1 Olea europaea HOM05D002556 ORTHO05D003153 1.4e-10 72.4 180 26.7
CDE12G0271 Ceratophyllum demersum HOM05D002556 ORTHO05D003153 1.8e-10 72.0 204 21.1
Ah.08g212730 Amaranthus hybridus HOM05D002556 ORTHO05D008572 2.3e-10 71.6 179 25.7
Zm00001eb417970 Zea mays HOM05D002556 ORTHO05D003153 4.0e-10 70.9 204 23.5
BcaB04g19772 Brassica carinata HOM05D005255 ORTHO05D021741 7.5e-09 66.6 67 49.3
CSS0031733 Camellia sinensis var. sinensis HOM05D002556 ORTHO05D003153 1.7e-08 65.5 144 27.1
C03p67440 Brassica napus HOM05D005255 ORTHO05D021741 2.9e-08 64.7 70 50.0
Haze_04805 Corylus avellana HOM05D002556 ORTHO05D003153 3.7e-08 64.3 177 23.7
Os05g0147133 Oryza sativa ssp. japonica HOM05D002556 ORTHO05D003153 1.4e-07 62.4 161 24.8
C03p67420 Brassica napus HOM05D005255 ORTHO05D021741 2.4e-07 61.6 59 50.8
MELO3C034260.2 Cucumis melo HOM05D000018 ORTHO05D001766 2.1e-06 58.5 48 58.3
BcaB04g19774 Brassica carinata HOM05D002580 ORTHO05D002811 2.7e-06 58.2 44 61.4


User provided reference genes

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