Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4670 Erigeron canadensis HOM05D006253 ORTHO05D007666 3.9e-88 328.2 172 100.0
HanXRQChr16g0501301 Helianthus annuus HOM05D006253 ORTHO05D007666 1.2e-78 296.6 172 89.5
Lsat_1_v5_gn_5_112681 Lactuca sativa HOM05D006253 ORTHO05D007666 1.6e-73 279.6 169 85.2
TAR376G0695 Trochodendron aralioides HOM05D006253 ORTHO05D007666 2.3e-69 265.8 172 79.1
Lj5C209T13 Lonicera japonica HOM05D006253 ORTHO05D007666 5.2e-69 264.6 172 77.9
VMungo1080G0444 Vigna mungo HOM05D006253 ORTHO05D007666 2.0e-68 262.7 172 78.5
Oeu010588.1 Olea europaea HOM05D006253 ORTHO05D007666 2.6e-68 262.3 172 77.9
Sc14g0002650 Simmondsia chinensis HOM05D006253 ORTHO05D007666 7.6e-68 260.8 172 77.3
SGA_v2.0_scaffold22G09667 Striga asiatica HOM05D006253 ORTHO05D007666 1.3e-67 260.0 172 77.9
Thecc.02G100600 Theobroma cacao HOM05D006253 ORTHO05D007666 1.3e-67 260.0 172 76.7
Glyma.04G194000 Glycine max HOM05D006253 ORTHO05D007666 1.7e-67 259.6 172 78.5
Manes.01G064000 Manihot esculenta HOM05D006253 ORTHO05D007666 2.2e-67 259.2 172 76.2
Lalb_Chr25g0286231 Lupinus albus HOM05D006253 ORTHO05D007666 3.8e-67 258.5 172 75.0
Lj6g0019810 Lotus japonicus HOM05D006253 ORTHO05D007666 4.9e-67 258.1 172 77.3
CiPaw.05G006400 Carya illinoinensis HOM05D006253 ORTHO05D007666 6.4e-67 257.7 172 76.2
Nn5g30328 Nelumbo nucifera HOM05D006253 ORTHO05D007666 6.4e-67 257.7 172 75.6
Phvul.005G182700 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 6.4e-67 257.7 172 77.3
arahy.Tifrunner.gnm1.ann1.ETD7FQ Arachis hypogaea HOM05D006253 ORTHO05D007666 1.1e-66 256.9 172 75.6
Gohir.A01G006900 Gossypium hirsutum HOM05D006253 ORTHO05D007666 1.4e-66 256.5 172 75.6
Gorai.002G008000 Gossypium raimondii HOM05D006253 ORTHO05D007666 1.9e-66 256.1 172 75.6
HanXRQChr10g0319791 Helianthus annuus HOM05D006253 ORTHO05D007666 1.9e-66 256.1 150 89.3
Hma1.2p1_0370F.1_g137800 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.9e-66 256.1 172 75.6
Prupe.8G124200 Prunus persica HOM05D006253 ORTHO05D007666 2.4e-66 255.8 174 75.9
QL11p035967 Quercus lobata HOM05D006253 ORTHO05D007666 7.1e-66 254.2 171 76.0
PGSC0003DMG400025894 Solanum tuberosum HOM05D006253 ORTHO05D007666 7.1e-66 254.2 172 75.6
CAN.G1041.15 Capsicum annuum HOM05D006253 ORTHO05D007666 9.2e-66 253.8 172 75.6
MSTRG.27724 Avicennia marina HOM05D006253 ORTHO05D007666 1.2e-65 253.4 172 76.2
Sopen01g050480 Solanum pennellii HOM05D006253 ORTHO05D007666 1.6e-65 253.1 172 75.0
Potri.004G141400 Populus trichocarpa HOM05D006253 ORTHO05D007666 2.1e-65 252.7 173 73.4
Ca_01013_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 2.7e-65 252.3 167 77.8
Ca_15796_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 4.6e-65 251.5 172 76.7
Ca_30406_v3 Cicer arietinum L. HOM05D006253 ORTHO05D007666 4.6e-65 251.5 172 76.7
Gohir.D01G007000 Gossypium hirsutum HOM05D006253 ORTHO05D007666 4.6e-65 251.5 172 74.4
Rhsim03G0192100 Rhododendron simsii HOM05D006253 ORTHO05D007666 6.0e-65 251.1 172 76.2
Sabra04G0093200 Salix brachista HOM05D006253 ORTHO05D007666 6.0e-65 251.1 173 73.4
Actinidia12952 Actinidia chinensis HOM05D006253 ORTHO05D007666 7.8e-65 250.8 173 75.1
GSVIVG01031749001 Vitis vinifera HOM05D006253 ORTHO05D007666 7.8e-65 250.8 172 75.6
MD05G1080500 Malus domestica HOM05D006253 ORTHO05D007666 3.0e-64 248.8 173 73.4
PGR142G1116 Punica granatum HOM05D006253 ORTHO05D007666 3.0e-64 248.8 173 75.7
COL.COLO4_32658 Corchorus olitorius HOM05D006253 ORTHO05D007666 3.9e-64 248.4 172 73.3
arahy.Tifrunner.gnm1.ann1.AJN977 Arachis hypogaea HOM05D006253 ORTHO05D007666 5.1e-64 248.1 172 73.8
TPR.G19178 Trifolium pratense HOM05D006253 ORTHO05D007666 5.1e-64 248.1 166 77.1
Ciclev10029390m.g Citrus clementina HOM05D006253 ORTHO05D007666 6.6e-64 247.7 173 74.0
RcHm_v2.0_Chr6g0257111 Rosa chinensis HOM05D006253 ORTHO05D007666 1.1e-63 246.9 174 72.4
Eucgr.I01155 Eucalyptus grandis HOM05D006253 ORTHO05D007666 2.5e-63 245.7 173 75.1
TWI79G0152 Tripterygium wilfordii HOM05D006253 ORTHO05D007666 2.5e-63 245.7 173 73.4
TPR.G19494 Trifolium pratense HOM05D006253 ORTHO05D007666 5.6e-63 244.6 165 76.4
arahy.Tifrunner.gnm1.ann1.5N1458 Arachis hypogaea HOM05D006253 ORTHO05D007666 9.6e-63 243.8 193 67.9
Rhsim05G0084000 Rhododendron simsii HOM05D006253 ORTHO05D007666 9.6e-63 243.8 181 71.8
FvH4_2g06110 Fragaria vesca HOM05D006253 ORTHO05D007666 1.6e-62 243.0 174 70.7
FAN24G2487 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.6e-62 243.0 174 70.7
FAN27G3246 Fragaria x ananassa HOM05D006253 ORTHO05D007666 4.7e-62 241.5 180 71.1
Sed0027718 Sechium edule HOM05D006253 ORTHO05D007666 8.1e-62 240.7 172 71.5
CsaV3_3G018580 Cucumis sativus L. HOM05D006253 ORTHO05D007666 1.4e-61 240.0 172 70.9
MELO3C019508.2 Cucumis melo HOM05D006253 ORTHO05D007666 1.8e-61 239.6 172 70.9
Zm00001eb124670 Zea mays HOM05D006253 ORTHO05D007666 6.9e-61 237.7 173 72.3
Medtr8g099835 Medicago truncatula HOM05D006253 ORTHO05D007666 1.2e-60 236.9 149 81.2
Os01g0142200 Oryza sativa ssp. japonica HOM05D006253 ORTHO05D007666 1.2e-60 236.9 173 72.3
CANSAT25G0326 Cannabis sativa HOM05D006253 ORTHO05D007666 4.4e-60 235.0 172 69.2
EL10Ac5g11497 Beta vulgaris HOM05D006253 ORTHO05D007666 5.8e-60 234.6 172 69.2
arahy.Tifrunner.gnm1.ann1.1E2X9I Arachis hypogaea HOM05D006253 ORTHO05D007666 9.9e-60 233.8 150 78.0
HPP92_001047 Vanilla planifolia HOM05D006253 ORTHO05D007666 2.2e-59 232.6 172 69.2
CANSAT35G0887 Cannabis sativa HOM05D006253 ORTHO05D007666 3.8e-59 231.9 172 68.6
THA.LOC104807358 Tarenaya hassleriana HOM05D006253 ORTHO05D007666 4.9e-59 231.5 173 68.8
PSO782G1871 Papaver somniferum HOM05D006253 ORTHO05D007666 1.1e-58 230.3 167 71.9
CARHR242350 Cardamine hirsuta HOM05D006253 ORTHO05D007666 1.0e-56 223.8 165 69.1
Psat5g098280 Pisum sativum HOM05D006253 ORTHO05D007666 1.0e-56 223.8 144 79.2
Duzib052G0633 Durio zibethinus HOM05D006253 ORTHO05D007666 5.1e-56 221.5 144 77.1
Solyc01g108260.4 Solanum lycopersicum HOM05D006253 ORTHO05D007666 1.1e-55 220.3 149 75.8
Glyma.06G172100 Glycine max HOM05D006253 ORTHO05D007666 1.9e-55 219.5 144 77.8
Atru.chr5.2705 Acer truncatum HOM05D006253 ORTHO05D007666 2.5e-55 219.2 173 72.3
AL7G16840 Arabidopsis lyrata HOM05D006253 ORTHO05D007666 2.5e-55 219.2 173 67.1
AT4G34412 Arabidopsis thaliana HOM05D006253 ORTHO05D007666 5.6e-55 218.0 173 66.5
Carub.0007s0590 Capsella rubella HOM05D006253 ORTHO05D007666 7.3e-55 217.6 173 65.9
Thhalv10026394m.g Eutrema salsugineum HOM05D006253 ORTHO05D007666 7.3e-55 217.6 173 65.9
Sp7g32200 Schrenkiella parvula HOM05D006253 ORTHO05D007666 7.3e-55 217.6 173 66.5
BcaNung06978 Brassica carinata HOM05D006253 ORTHO05D007666 4.8e-54 214.9 173 65.9
C07p60590 Brassica napus HOM05D006253 ORTHO05D007666 4.8e-54 214.9 173 65.9
BraA03t15367Z Brassica rapa HOM05D006253 ORTHO05D007666 4.8e-54 214.9 173 65.9
MBI02_g02992_MAGBIO Magnolia biondii HOM05D006253 ORTHO05D007666 4.8e-54 214.9 144 75.7
AagrBONN_evm.TU.Sc2ySwM_344.4457 Anthoceros agrestis HOM05D006253 ORTHO05D007666 4.0e-53 211.8 165 62.4
A01p04020 Brassica napus HOM05D006253 ORTHO05D007666 5.3e-53 211.5 163 68.1
Mapoly0083s0082 Marchantia polymorpha HOM05D006253 ORTHO05D007666 5.3e-53 211.5 165 63.6
Aa31LG2G16330 Aethionema arabicum HOM05D006253 ORTHO05D007666 1.2e-52 210.3 173 64.2
PSO478G4849 Papaver somniferum HOM05D006253 ORTHO05D007666 6.4e-51 204.5 144 74.3
FAN20G2826 Fragaria x ananassa HOM05D006253 ORTHO05D007666 1.9e-50 203.0 172 62.8
DCAR_007862 Daucus carota HOM05D006253 ORTHO05D007666 2.4e-50 202.6 144 71.5
Sed0021593 Sechium edule HOM05D006253 ORTHO05D007666 9.3e-50 200.7 172 62.2
SMO351G0094 Selaginella moellendorffii HOM05D006253 ORTHO05D007666 9.3e-50 200.7 165 63.6
CSS0003209 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 7.9e-49 197.6 142 71.8
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 3.0e-48 195.7 143 70.6
Pp3c22_3990 Physcomitrium patens HOM05D006253 ORTHO05D007666 3.9e-48 195.3 165 60.0
BolC7t46489H Brassica oleracea HOM05D003825 ORTHO05D004491 3.3e-47 192.2 150 66.7
Hund00335 Selenicereus undatus HOM05D006253 ORTHO05D007666 8.1e-46 187.6 172 59.9
FAN15G3440 Fragaria x ananassa HOM05D006253 ORTHO05D007666 6.9e-45 184.5 172 59.9
CBR_g38557 Chara braunii HOM05D006253 ORTHO05D007666 1.5e-44 183.3 165 58.2
Phvul.002G266500 Phaseolus vulgaris HOM05D006253 ORTHO05D007666 1.6e-38 163.3 111 73.0
SEGI_00233 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 2.1e-38 162.9 108 75.0
AUR62029937 Chenopodium quinoa HOM05D006253 ORTHO05D007666 8.2e-38 161.0 127 65.4
AUR62033746 Chenopodium quinoa HOM05D006253 ORTHO05D007666 5.3e-37 158.3 144 59.7
CSS0033941 Camellia sinensis var. sinensis HOM05D006253 ORTHO05D007666 5.5e-34 148.3 139 63.3
Medtr2g105210 Medicago truncatula HOM05D006253 ORTHO05D007666 5.5e-34 148.3 123 65.0
BolC1t00422H Brassica oleracea HOM05D006253 ORTHO05D007666 3.3e-31 139.0 118 64.4
MD10G1094500 Malus domestica HOM05D006253 ORTHO05D007666 5.7e-31 138.3 126 59.5
MCO10G211 Micromonas commoda HOM05D006253 ORTHO05D007666 1.8e-29 133.3 159 45.3
SalBow3G2580 Salvia bowleyana HOM05D006253 ORTHO05D007666 2.0e-28 129.8 120 60.8
Cc02_g18770 Coffea canephora HOM05D006253 ORTHO05D007666 2.2e-27 126.3 89 69.7
vmacro19500 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 5.0e-27 125.2 161 50.3
Cre01.g030950 Chlamydomonas reinhardtii HOM05D006253 ORTHO05D007666 1.9e-26 123.2 165 42.4
PRCOL_00001305 Prasinoderma coloniale HOM05D006253 ORTHO05D007666 3.2e-26 122.5 177 42.9
C01p04340 Brassica napus HOM05D006253 ORTHO05D007666 4.2e-26 122.1 99 63.6
Prupe.4G258000 Prunus persica HOM05D006253 ORTHO05D007666 4.6e-25 118.6 99 60.6
Prupe.6G016400 Prunus persica HOM05D006253 ORTHO05D007666 1.1e-23 114.0 127 52.8
A03p62890 Brassica napus HOM05D000211 ORTHO05D007666 3.3e-23 112.5 95 63.2
Ah.10g034240 Amaranthus hybridus HOM05D006253 ORTHO05D007666 4.8e-22 108.6 86 61.6
vmacro06019 Vaccinium macrocarpon HOM05D006253 ORTHO05D007666 6.3e-22 108.2 95 62.1
Gorai.005G238200 Gossypium raimondii HOM05D006253 ORTHO05D007666 8.2e-22 107.8 106 55.7
Sabra09G0078100 Salix brachista HOM05D006253 ORTHO05D007666 2.1e-17 93.2 86 60.5
Hma1.2p1_0804F.1_g221060 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 1.0e-16 90.9 69 66.7
Gohir.D02G210201 Gossypium hirsutum HOM05D006253 ORTHO05D007666 5.1e-16 88.6 106 49.1
Migut.N01188 Erythranthe guttata HOM05D006253 ORTHO05D007666 3.3e-15 85.9 59 72.9
Hma1.2p1_0674F.1_g201500 Hydrangea macrophylla HOM05D006253 ORTHO05D007666 2.2e-14 83.2 52 78.8
ClCG05G009990 Citrullus lanatus HOM05D006253 ORTHO05D007666 5.3e-13 78.6 129 39.5
Oeu025576.2 Olea europaea HOM05D006253 ORTHO05D007666 5.3e-13 78.6 64 65.6
Prupe.4G259300 Prunus persica HOM05D006253 ORTHO05D007666 4.5e-12 75.5 86 50.0
Aqoxy5G01240 Aquilegia oxysepala HOM05D006253 ORTHO05D007666 1.1e-10 70.9 57 63.2
SEGI_00525 Sequoiadendron giganteum HOM05D006253 ORTHO05D007666 1.2e-09 67.4 56 60.7
Prupe.2G172700 Prunus persica HOM05D006253 ORTHO05D007666 6.1e-09 65.1 43 67.4
Migut.N01189 Erythranthe guttata HOM05D006253 ORTHO05D007666 3.9e-08 62.4 47 68.1
BolC1t00423H Brassica oleracea HOM05D000123 ORTHO05D009958 1.7e-06 57.0 50 62.0


User provided reference genes

Program Settings