Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 4.7e-55 217.6 109 100.0
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 5.9e-42 174.1 112 83.9
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 1.6e-34 149.4 110 74.5
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 2.0e-34 149.1 108 70.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.5e-32 142.9 109 69.7
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 5.5e-32 141.0 109 69.7
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.8e-28 128.6 110 61.8
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 8.3e-28 127.1 111 61.3
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.3e-28 127.1 112 61.6
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 9.1e-27 123.6 112 57.1
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.2e-26 123.2 110 62.7
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.6e-26 122.9 111 56.8
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 2.0e-26 122.5 110 58.2
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.3e-25 119.8 111 56.8
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.7e-25 119.4 100 64.0
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.3e-25 119.0 113 57.5
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 1.1e-24 116.7 113 56.6
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.9e-24 115.9 114 57.0
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 2.5e-24 115.5 112 57.1
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.3e-24 115.2 108 59.3
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 3.3e-24 115.2 108 59.3
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.6e-23 112.8 110 51.8
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 1.6e-23 112.8 110 51.8
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 4.7e-23 111.3 125 55.2
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 4.7e-23 111.3 113 54.0
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 4.7e-23 111.3 114 55.3
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.0e-22 110.2 110 54.5
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.0e-22 108.6 106 54.7
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 5.2e-22 107.8 110 51.8
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 6.8e-22 107.5 99 58.6
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 6.8e-22 107.5 110 54.5
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.0e-21 105.9 109 52.3
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.0e-21 105.9 100 59.0
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.0e-21 105.9 108 56.5
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.0e-21 105.9 113 53.1
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 2.0e-21 105.9 112 55.4
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.6e-21 105.5 115 50.4
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.4e-21 105.1 111 52.3
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 5.7e-21 104.4 115 51.3
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 5.7e-21 104.4 110 50.9
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 9.8e-21 103.6 113 49.6
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 9.8e-21 103.6 109 52.3
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.3e-20 103.2 114 56.1
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.3e-20 103.2 114 56.1
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.3e-20 103.2 114 56.1
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.3e-20 103.2 109 52.3
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.7e-20 102.8 111 50.5
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 2.2e-20 102.4 111 48.6
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.7e-20 101.7 112 53.6
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.9e-20 101.3 111 50.5
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 4.9e-20 101.3 112 48.2
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.9e-20 101.3 111 50.5
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.9e-20 101.3 112 49.1
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.3e-20 100.9 109 54.1
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 6.3e-20 100.9 111 51.4
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 8.3e-20 100.5 111 48.6
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.1e-19 100.1 115 47.0
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.1e-19 100.1 115 47.0
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-19 100.1 109 53.2
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.1e-19 100.1 111 48.6
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.4e-19 99.8 109 51.4
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-19 99.8 109 53.2
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.4e-19 99.8 121 50.4
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.8e-19 99.4 111 53.2
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.8e-19 99.4 109 47.7
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.4e-19 99.0 119 48.7
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.1e-19 98.6 119 48.7
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 3.1e-19 98.6 113 52.2
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 3.1e-19 98.6 113 52.2
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 4.1e-19 98.2 109 47.7
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 4.1e-19 98.2 97 55.7
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 9.2e-19 97.1 98 56.1
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.2e-18 96.7 104 53.8
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.2e-18 96.7 109 50.5
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.6e-18 96.3 99 50.5
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.0e-18 95.9 116 50.0
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 3.5e-18 95.1 95 60.0
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 3.5e-18 95.1 110 50.9
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.5e-18 94.7 119 47.1
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 7.8e-18 94.0 115 49.6
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.0e-17 93.6 107 50.5
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.0e-17 93.6 109 45.9
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.3e-17 92.4 109 47.7
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.3e-17 92.4 125 46.4
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 5.0e-17 91.3 109 47.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 6.6e-17 90.9 100 51.0
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 8.6e-17 90.5 100 49.0
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 8.6e-17 90.5 107 50.5
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.1e-16 90.1 110 45.5
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.5e-16 89.7 109 45.0
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.9e-16 89.4 105 45.7
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 2.5e-16 89.0 104 47.1
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 4.3e-16 88.2 109 45.9
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 5.6e-16 87.8 112 42.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 5.6e-16 87.8 112 42.9
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 7.3e-16 87.4 125 45.6
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 7.3e-16 87.4 115 45.2
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 9.5e-16 87.0 109 47.7
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 1.2e-15 86.7 116 43.1
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.6e-15 86.3 109 44.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.6e-15 86.3 112 42.0
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.6e-15 86.3 97 53.6
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 2.1e-15 85.9 112 42.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.1e-15 85.9 115 46.1
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 2.1e-15 85.9 96 53.1
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 2.8e-15 85.5 116 44.0
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 3.6e-15 85.1 116 43.1
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 3.6e-15 85.1 107 43.0
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 4.7e-15 84.7 112 45.5
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 4.7e-15 84.7 112 45.5
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.0e-15 84.0 109 44.0
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 8.0e-15 84.0 109 42.2
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.4e-14 83.2 112 44.6
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.4e-14 83.2 112 41.1
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 3.0e-14 82.0 100 48.0
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 4.0e-14 81.6 109 43.1
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 4.0e-14 81.6 109 43.1
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 4.0e-14 81.6 89 57.3
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 5.2e-14 81.3 95 46.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 5.2e-14 81.3 100 50.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 8.9e-14 80.5 110 47.3
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.5e-13 79.7 116 41.4
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 5.8e-13 77.8 99 41.4
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 9.8e-13 77.0 117 46.2
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 9.8e-13 77.0 113 44.2
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 6.4e-12 74.3 113 42.5
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.3e-12 73.9 109 41.3
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.1e-11 73.6 112 42.0
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.9e-11 72.8 112 42.0
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.4e-11 72.4 116 43.1
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 4.1e-11 71.6 112 40.2
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.0e-10 69.3 96 42.7
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.0e-10 69.3 98 39.8
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.7e-10 68.9 90 46.7
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 2.3e-09 65.9 100 37.0
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 3.0e-09 65.5 85 45.9
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 1.1e-08 63.5 104 39.4
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.9e-08 62.8 94 42.6
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 5.6e-08 61.2 108 38.0
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 6.2e-07 57.8 111 41.4
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 8.0e-07 57.4 56 53.6
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.8e-06 56.2 113 37.2
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 5.2e-06 54.7 103 35.9
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 6.8e-06 54.3 95 41.1


User provided reference genes

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