Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 1.0e-173 613.2 293 100.0
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 3.7e-139 498.4 281 84.0
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 4.3e-132 474.9 294 76.2
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 3.7e-131 471.9 294 75.2
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 1.7e-128 463.0 269 80.3
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 1.6e-118 429.9 310 64.5
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 2.0e-113 412.9 301 66.8
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 4.5e-113 411.8 301 66.4
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 1.7e-112 409.8 290 69.0
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 5.0e-112 408.3 309 63.4
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 6.1e-110 401.4 305 63.3
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 2.3e-109 399.4 290 65.5
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 2.6e-108 396.0 285 63.5
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 2.4e-106 389.4 289 61.6
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 5.3e-106 388.3 281 63.7
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 1.2e-105 387.1 288 61.8
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.6e-105 386.7 294 61.6
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 2.0e-105 386.3 287 63.4
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 1.7e-104 383.3 290 59.3
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 3.8e-104 382.1 284 62.7
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 5.0e-104 381.7 299 60.2
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 6.5e-104 381.3 296 60.1
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 8.5e-104 380.9 286 62.2
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 1.5e-103 380.2 284 60.9
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 2.5e-103 379.4 294 60.9
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 2.5e-103 379.4 296 61.5
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.5e-103 379.4 281 64.1
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 3.2e-103 379.0 287 61.0
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 5.5e-103 378.3 287 62.0
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 5.5e-103 378.3 315 57.1
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 1.2e-102 377.1 304 58.6
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 2.7e-102 375.9 308 58.4
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 3.6e-102 375.6 290 62.1
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 4.7e-102 375.2 289 59.9
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 6.1e-102 374.8 308 58.1
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 8.0e-102 374.4 312 56.1
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 1.0e-101 374.0 308 57.8
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 1.0e-101 374.0 308 57.8
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.8e-101 373.2 287 61.3
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 2.3e-101 372.9 278 62.6
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 2.3e-101 372.9 295 61.0
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 2.3e-101 372.9 295 61.4
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 4.0e-101 372.1 294 59.5
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 4.0e-101 372.1 294 64.3
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 4.0e-101 372.1 293 61.8
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 6.8e-101 371.3 282 60.6
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 6.8e-101 371.3 287 61.3
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 6.8e-101 371.3 280 61.1
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 6.8e-101 371.3 291 59.5
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 8.8e-101 370.9 287 61.3
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 8.8e-101 370.9 280 62.1
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 1.2e-100 370.5 285 58.9
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 1.5e-100 370.2 284 60.9
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 2.6e-100 369.4 312 59.9
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 3.4e-100 369.0 287 59.6
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 4.4e-100 368.6 292 59.2
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 4.4e-100 368.6 292 56.8
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 5.7e-100 368.2 287 58.2
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 5.7e-100 368.2 292 58.6
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 1.3e-99 367.1 294 58.5
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 1.3e-99 367.1 298 60.4
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 1.7e-99 366.7 304 58.9
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 1.7e-99 366.7 292 59.2
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 2.8e-99 365.9 287 59.6
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 3.7e-99 365.5 281 60.9
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 4.8e-99 365.2 291 58.4
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 6.3e-99 364.8 291 58.4
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 6.3e-99 364.8 262 63.7
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 1.8e-98 363.2 300 57.0
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 1.8e-98 363.2 283 58.3
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 2.4e-98 362.8 298 57.7
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 7.0e-98 361.3 282 59.2
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 3.5e-97 359.0 289 58.1
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 4.5e-97 358.6 271 62.4
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 5.9e-97 358.2 288 57.6
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 7.7e-97 357.8 245 64.9
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 1.3e-96 357.1 298 56.0
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 1.3e-96 357.1 272 62.1
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 2.3e-96 356.3 288 57.6
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 2.3e-96 356.3 298 54.7
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 2.3e-96 356.3 298 54.7
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 2.9e-96 355.9 281 60.1
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 2.9e-96 355.9 316 55.1
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 1.5e-95 353.6 291 57.4
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 3.3e-95 352.4 290 58.6
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 5.5e-95 351.7 306 54.9
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 7.2e-95 351.3 295 55.3
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 4.7e-94 348.6 284 57.4
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 1.4e-93 347.1 224 68.8
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 2.3e-93 346.3 277 59.9
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.6e-92 342.8 294 56.1
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 2.6e-92 342.8 276 56.2
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 5.7e-92 341.7 253 62.5
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 4.9e-91 338.6 234 63.7
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 1.1e-90 337.4 279 58.1
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 2.4e-90 336.3 288 55.9
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 9.2e-90 334.3 274 55.1
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 1.7e-88 330.1 274 57.7
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 4.3e-87 325.5 289 56.4
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 2.2e-83 313.2 290 51.4
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 4.9e-83 312.0 244 60.7
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 4.9e-83 312.0 295 51.9
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 6.4e-83 311.6 254 55.1
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 8.3e-83 311.2 277 55.2
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 2.5e-79 299.7 252 54.8
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 8.0e-78 294.7 204 62.7
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 1.4e-77 293.9 260 50.4
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.2e-76 290.8 210 60.5
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.2e-76 290.8 210 60.5
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 2.2e-75 286.6 191 66.5
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 2.9e-75 286.2 246 54.9
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 1.1e-74 284.3 244 54.9
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 1.1e-74 284.3 244 54.9
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 2.4e-74 283.1 236 55.9
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 3.2e-74 282.7 278 52.5
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 7.0e-74 281.6 245 53.5
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 2.1e-73 280.0 239 53.1
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 3.5e-73 279.3 236 56.8
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 3.5e-73 279.3 278 51.8
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 3.6e-70 269.2 153 77.1
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 1.4e-69 267.3 277 48.7
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 3.4e-60 236.1 234 50.9
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 4.8e-54 215.7 133 69.2
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 1.9e-50 203.8 137 70.1
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 1.7e-48 197.2 173 54.3
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 1.5e-47 194.1 285 38.9
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 4.5e-44 182.6 137 59.1
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 6.7e-40 168.7 105 67.6
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 9.6e-31 138.3 101 58.4
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 5.7e-23 112.5 146 41.8
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 3.6e-17 93.2 124 41.1
unitig_52.g17562 Utricularia gibba HOM05D005894 ORTHO05D420364 1.5e-07 61.2 54 53.7
SMO195G0042 Selaginella moellendorffii HOM05D005894 ORTHO05D376219 4.4e-07 59.7 50 52.0


User provided reference genes

Program Settings