Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4443 Erigeron canadensis HOM05D009784 ORTHO05D010235 0.0e+00 3746.4 2166 100.0
ECA234G3336 Erigeron canadensis HOM05D000015 ORTHO05D000270 1.2e-66 260.4 512 36.3
HanXRQChr05g0151691 Helianthus annuus HOM05D009784 ORTHO05D010235 5.8e-56 224.9 269 44.2
ECA234G2376 Erigeron canadensis HOM05D009784 ORTHO05D010235 1.6e-50 206.8 322 41.6
HanXRQChr12g0380731 Helianthus annuus HOM05D009784 ORTHO05D010235 3.1e-49 202.6 297 45.5
HanXRQChr08g0216601 Helianthus annuus HOM05D009784 ORTHO05D010235 7.6e-48 198.0 295 39.3
Lsat_1_v5_gn_4_8941 Lactuca sativa HOM05D009784 ORTHO05D000088 7.1e-46 191.4 289 42.9
Lsat_1_v5_gn_4_9181 Lactuca sativa HOM05D009784 ORTHO05D010235 7.1e-46 191.4 277 42.6
HanXRQChr17g0570521 Helianthus annuus HOM05D009784 ORTHO05D010235 1.2e-45 190.7 316 42.7
ECA234G0573 Erigeron canadensis HOM05D009784 ORTHO05D010235 3.3e-43 182.6 258 37.6
ECA234G1207 Erigeron canadensis HOM05D009784 ORTHO05D000088 1.2e-40 174.1 284 39.8
HanXRQChr17g0570531 Helianthus annuus HOM05D009784 ORTHO05D010235 4.6e-37 162.2 260 43.1
Lsat_1_v5_gn_4_9001 Lactuca sativa HOM05D009784 ORTHO05D000088 4.0e-33 149.1 301 31.6
ECA246G2169 Erigeron canadensis HOM05D000983 ORTHO05D006794 6.0e-29 135.2 289 32.5
HanXRQChr07g0191941 Helianthus annuus HOM05D009784 ORTHO05D010235 1.8e-28 133.7 461 26.2
HanXRQChr06g0183971 Helianthus annuus HOM05D009784 ORTHO05D010235 1.5e-27 130.6 294 36.7
HanXRQChr07g0191951 Helianthus annuus HOM05D009784 ORTHO05D010235 4.0e-25 122.5 254 34.3
Lsat_1_v5_gn_3_51441 Lactuca sativa HOM05D009784 ORTHO05D010235 6.9e-25 121.7 272 29.0
HanXRQChr07g0191931 Helianthus annuus HOM05D009784 ORTHO05D010235 1.6e-21 110.5 265 27.9
CSS0024635 Camellia sinensis var. sinensis HOM05D009784 ORTHO05D010235 3.1e-17 96.3 241 24.5
Dinv26758 Davidia involucrata HOM05D000823 ORTHO05D000088 2.2e-15 90.1 268 23.1
Lj2A565G28 Lonicera japonica HOM05D000395 ORTHO05D000088 3.8e-15 89.4 470 20.6
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 3.8e-15 89.4 458 23.1
Thecc.01G047300 Theobroma cacao HOM05D000823 ORTHO05D000088 5.0e-15 89.0 263 25.1
Gorai.003G020600 Gossypium raimondii HOM05D000823 ORTHO05D010235 6.5e-15 88.6 464 19.2
Gohir.D03G019725 Gossypium hirsutum HOM05D000823 ORTHO05D010235 1.9e-14 87.0 464 19.2
Nn6g32142 Nelumbo nucifera HOM05D000823 ORTHO05D000088 7.2e-14 85.1 256 22.3
HPP92_014045 Vanilla planifolia HOM05D000823 ORTHO05D000088 7.2e-14 85.1 265 24.2
Cc07_g05480 Coffea canephora HOM05D000823 ORTHO05D000088 9.3e-14 84.7 264 25.0
Lsat_1_v5_gn_4_9021 Lactuca sativa HOM05D009784 ORTHO05D000088 9.3e-14 84.7 102 38.2
AT4G00260 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 1.2e-13 84.3 436 22.5
Dinv26761 Davidia involucrata HOM05D000395 ORTHO05D000088 2.1e-13 83.6 437 23.1
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 2.1e-13 83.6 251 25.1
Migut.D01639 Erythranthe guttata HOM05D000888 ORTHO05D000740 3.6e-13 82.8 232 28.9
PSO675G1309 Papaver somniferum HOM05D000395 ORTHO05D000088 3.6e-13 82.8 241 25.7
Gorai.003G020700 Gossypium raimondii HOM05D000823 ORTHO05D000088 3.0e-12 79.7 296 21.3
COL.COLO4_11318 Corchorus olitorius HOM05D056455 ORTHO05D000088 6.7e-12 78.6 244 25.0
Dinv36014 Davidia involucrata HOM05D000888 ORTHO05D000740 1.5e-11 77.4 208 26.4
ECA246G4930 Erigeron canadensis HOM05D009106 ORTHO05D010235 1.5e-11 77.4 216 31.5
Manes.13G130800 Manihot esculenta HOM05D000823 ORTHO05D000088 1.9e-11 77.0 253 25.7
Prupe.4G206300 Prunus persica HOM05D000823 ORTHO05D000088 1.9e-11 77.0 252 23.8
SGA_v2.0_scaffold204G41626 Striga asiatica HOM05D000823 ORTHO05D000088 1.9e-11 77.0 271 22.9
PSO170G0378 Papaver somniferum HOM05D000823 ORTHO05D000088 2.5e-11 76.6 297 24.2
Peaxi162Scf01198g00214 Petunia axillaris HOM05D009106 ORTHO05D010235 2.5e-11 76.6 249 29.7
TAR376G0714 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.5e-11 76.6 277 20.9
Lj2A601G13 Lonicera japonica HOM05D000395 ORTHO05D000088 5.7e-11 75.5 273 24.2
PSO017G3561 Papaver somniferum HOM05D000823 ORTHO05D000088 5.7e-11 75.5 269 24.9
Gohir.A02G160800 Gossypium hirsutum HOM05D000823 ORTHO05D010235 7.4e-11 75.1 282 22.0
Gohir.D03G019700 Gossypium hirsutum HOM05D000823 ORTHO05D010235 7.4e-11 75.1 282 21.6
Gorai.003G020400 Gossypium raimondii HOM05D000823 ORTHO05D010235 7.4e-11 75.1 282 21.6
Cfa015902 Carpinus fangiana HOM05D000395 ORTHO05D000088 9.7e-11 74.7 260 24.6
FvH4_3g19710 Fragaria vesca HOM05D000823 ORTHO05D000088 9.7e-11 74.7 285 24.6
FAN01G3034 Fragaria x ananassa HOM05D000888 ORTHO05D000740 9.7e-11 74.7 236 24.6
Nn5g29401 Nelumbo nucifera HOM05D000823 ORTHO05D000088 1.3e-10 74.3 79 40.5
Gohir.A02G160700 Gossypium hirsutum HOM05D000823 ORTHO05D000088 1.7e-10 73.9 288 21.2
Peaxi162Scf00234g00222 Petunia axillaris HOM05D009106 ORTHO05D010235 1.7e-10 73.9 261 24.5
Migut.D01642 Erythranthe guttata HOM05D000888 ORTHO05D000740 2.2e-10 73.6 228 25.9
PSO541G0256 Papaver somniferum HOM05D000395 ORTHO05D000088 2.2e-10 73.6 237 24.1
CDE01G0565 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 3.7e-10 72.8 202 27.2
Lj2A565G29 Lonicera japonica HOM05D000395 ORTHO05D000088 3.7e-10 72.8 238 25.6
Aqoxy5G01406 Aquilegia oxysepala HOM05D000395 ORTHO05D000088 4.8e-10 72.4 465 22.4
TPR.G21112 Trifolium pratense HOM05D000395 ORTHO05D000088 8.2e-10 71.6 240 25.4
Nn1g09566 Nelumbo nucifera HOM05D000888 ORTHO05D000740 1.4e-09 70.9 256 23.8
RcHm_v2.0_Chr7g0224941 Rosa chinensis HOM05D000823 ORTHO05D000088 1.4e-09 70.9 231 20.8
SalBow1G7999 Salvia bowleyana HOM05D010976 ORTHO05D000088 1.4e-09 70.9 248 22.6
SGA_v2.0_scaffold110G31276 Striga asiatica HOM05D000888 ORTHO05D000740 1.4e-09 70.9 255 25.5
A08p18500 Brassica napus HOM05D000888 ORTHO05D000740 1.8e-09 70.5 223 24.7
A09p40100 Brassica napus HOM05D000888 ORTHO05D000740 1.8e-09 70.5 195 25.1
Nitab4.5_0002280g0040 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.8e-09 70.5 337 23.4
Sp4g03680 Schrenkiella parvula HOM05D000888 ORTHO05D000740 1.8e-09 70.5 212 27.4
CDE04G1885 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 2.4e-09 70.1 94 36.2
Hma1.2p1_0023F.1_g015290 Hydrangea macrophylla HOM05D000888 ORTHO05D000740 2.4e-09 70.1 235 27.2
PGR102G0754 Punica granatum HOM05D000823 ORTHO05D000088 2.4e-09 70.1 249 22.1
RcHm_v2.0_Chr6g0259811 Rosa chinensis HOM05D000823 ORTHO05D009132 2.4e-09 70.1 252 28.2
RcHm_v2.0_Chr6g0299611 Rosa chinensis HOM05D000823 ORTHO05D000088 2.4e-09 70.1 212 25.0
Sp4g03640 Schrenkiella parvula HOM05D000888 ORTHO05D011624 2.4e-09 70.1 375 21.9
Aa31LG5G24230 Aethionema arabicum HOM05D000888 ORTHO05D000740 3.1e-09 69.7 296 25.7
Lsat_1_v5_gn_3_94320 Lactuca sativa HOM05D000395 ORTHO05D000088 3.1e-09 69.7 259 25.1
Oeu064572.1 Olea europaea HOM05D000888 ORTHO05D000740 3.1e-09 69.7 193 23.3
FAN15G0813 Fragaria x ananassa HOM05D000823 ORTHO05D000088 4.1e-09 69.3 109 33.0
RcHm_v2.0_Chr3g0482191 Rosa chinensis HOM05D000823 ORTHO05D000088 4.1e-09 69.3 234 23.9
TPR.G21114 Trifolium pratense HOM05D000395 ORTHO05D000088 4.1e-09 69.3 240 25.8
DCAR_003839 Daucus carota HOM05D000823 ORTHO05D000088 5.3e-09 68.9 259 20.5
Prupe.4G178300 Prunus persica HOM05D000823 ORTHO05D000088 5.3e-09 68.9 291 21.0
Solyc06g074160.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 6.9e-09 68.6 255 26.7
Sopen04g033170 Solanum pennellii HOM05D000823 ORTHO05D000088 6.9e-09 68.6 354 23.2
FvH4_2g07231 Fragaria vesca HOM05D000823 ORTHO05D000088 9.1e-09 68.2 117 31.6
Sopen04g026790 Solanum pennellii HOM05D000888 ORTHO05D000740 9.1e-09 68.2 248 26.2
SGA_v2.0_scaffold15G07222 Striga asiatica HOM05D010976 ORTHO05D000088 9.1e-09 68.2 219 23.7
Lj2A600T56 Lonicera japonica HOM05D000395 ORTHO05D000088 1.2e-08 67.8 436 20.2
MD11G1251100 Malus domestica HOM05D000823 ORTHO05D000088 1.2e-08 67.8 256 21.1
Medtr3g005490 Medicago truncatula HOM05D000395 ORTHO05D000088 1.2e-08 67.8 235 27.2
Solyc04g079590.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 1.2e-08 67.8 354 23.2
Sopen06g030580 Solanum pennellii HOM05D000823 ORTHO05D000088 1.2e-08 67.8 251 25.5
Lj3g0010423 Lotus japonicus HOM05D010195 ORTHO05D000088 1.5e-08 67.4 249 24.9
Medtr5g070440 Medicago truncatula HOM05D000395 ORTHO05D000088 2.0e-08 67.0 243 24.7
FvH4_2g06970 Fragaria vesca HOM05D000823 ORTHO05D000088 2.6e-08 66.6 249 21.7
Nitab4.5_0005238g0010 Nicotiana tabacum HOM05D009106 ORTHO05D010235 2.6e-08 66.6 222 22.5
Oeu006163.1 Olea europaea HOM05D000823 ORTHO05D000088 2.6e-08 66.6 277 24.5
Phvul.006G100700 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 2.6e-08 66.6 294 23.5
Solyc04g064830.4 Solanum lycopersicum HOM05D000888 ORTHO05D000740 2.6e-08 66.6 248 25.8
PGSC0003DMG403024846 Solanum tuberosum HOM05D000888 ORTHO05D000740 2.6e-08 66.6 248 25.8
FvH4_2g40960 Fragaria vesca HOM05D000823 ORTHO05D000088 4.5e-08 65.9 242 23.1
FvH4_6g23740 Fragaria vesca HOM05D000823 ORTHO05D000088 4.5e-08 65.9 202 21.8
Nitab4.5_0000068g0140 Nicotiana tabacum HOM05D000823 ORTHO05D000088 4.5e-08 65.9 337 22.8
Oeu064573.3 Olea europaea HOM05D000888 ORTHO05D000740 4.5e-08 65.9 218 22.0
BcaNung01510 Brassica carinata HOM05D000888 ORTHO05D000740 1.0e-07 64.7 237 24.9
Cc05_g09340 Coffea canephora HOM05D000888 ORTHO05D000740 1.0e-07 64.7 237 24.9
FAN14G4811 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.0e-07 64.7 906 21.4
Lj3g0008727 Lotus japonicus HOM05D010195 ORTHO05D000088 1.0e-07 64.7 231 23.8
Manes.18G026450 Manihot esculenta HOM05D000888 ORTHO05D000740 1.0e-07 64.7 225 22.7
Phvul.011G050800 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 1.0e-07 64.7 280 21.4
SalBow1G2043 Salvia bowleyana HOM05D010976 ORTHO05D000088 1.0e-07 64.7 262 19.8
Atru.chr5.2871 Acer truncatum HOM05D000395 ORTHO05D000088 1.3e-07 64.3 289 21.5
MD15G1273900 Malus domestica HOM05D000395 ORTHO05D000088 1.7e-07 63.9 281 23.5
PGR102G3079 Punica granatum HOM05D000823 ORTHO05D000088 1.7e-07 63.9 278 28.1
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 2.2e-07 63.5 276 21.0
CAN.G32.2 Capsicum annuum HOM05D000888 ORTHO05D000740 2.2e-07 63.5 248 25.8
FvH4_1g14690 Fragaria vesca HOM05D000395 ORTHO05D000088 2.2e-07 63.5 339 22.4
FAN10G0782 Fragaria x ananassa HOM05D000888 ORTHO05D000740 2.2e-07 63.5 240 22.9
FAN10G2447 Fragaria x ananassa HOM05D000888 ORTHO05D000740 2.2e-07 63.5 240 22.9
FAN15G3650 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.2e-07 63.5 249 22.9
PGR102G1389 Punica granatum HOM05D000823 ORTHO05D000088 2.2e-07 63.5 268 30.6
RhsimUnG0104100 Rhododendron simsii HOM05D000395 ORTHO05D000088 2.2e-07 63.5 251 23.5
ECA232G4654 Erigeron canadensis HOM05D000823 ORTHO05D016096 2.9e-07 63.2 207 23.7
FAN05G5448 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.9e-07 63.2 202 21.3
RcHm_v2.0_Chr6g0259331 Rosa chinensis HOM05D000823 ORTHO05D000088 2.9e-07 63.2 245 25.3
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 3.8e-07 62.8 273 21.2
PGSC0003DMG400005893 Solanum tuberosum HOM05D000823 ORTHO05D000088 3.8e-07 62.8 228 26.8
Migut.C00649 Erythranthe guttata HOM05D000823 ORTHO05D000088 5.0e-07 62.4 296 22.6
FAN15G0739 Fragaria x ananassa HOM05D000823 ORTHO05D000088 5.0e-07 62.4 113 31.9
MD02G1160300 Malus domestica HOM05D000395 ORTHO05D000088 5.0e-07 62.4 233 23.2
PGSC0003DMG400043353 Solanum tuberosum HOM05D009106 ORTHO05D010235 5.0e-07 62.4 227 27.3
CSS0005810 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 8.5e-07 61.6 283 21.6
AUR62027222 Chenopodium quinoa HOM05D000823 ORTHO05D000088 8.5e-07 61.6 234 21.8
FvH4_7g12210 Fragaria vesca HOM05D000888 ORTHO05D000740 8.5e-07 61.6 219 23.3
Sed0001772 Sechium edule HOM05D000395 ORTHO05D000088 8.5e-07 61.6 200 24.0
Solyc02g081780.3 Solanum lycopersicum HOM05D009106 ORTHO05D010235 8.5e-07 61.6 262 25.2
GSVIVG01009586001 Vitis vinifera HOM05D000823 ORTHO05D000088 8.5e-07 61.6 327 22.9
CANSAT35G1236 Cannabis sativa HOM05D000395 ORTHO05D000088 1.1e-06 61.2 258 21.3
CANSAT80G0874 Cannabis sativa HOM05D000823 ORTHO05D000088 1.4e-06 60.8 246 23.2
Sp6g02680 Schrenkiella parvula HOM05D006628 ORTHO05D000088 1.4e-06 60.8 119 30.3
TPR.G25520 Trifolium pratense HOM05D000395 ORTHO05D000088 1.4e-06 60.8 245 21.6
AL4G15320 Arabidopsis lyrata HOM05D000888 ORTHO05D000740 1.9e-06 60.5 289 23.9
Cc00_g11360 Coffea canephora HOM05D037937 ORTHO05D010235 1.9e-06 60.5 302 21.2
MD02G1160000 Malus domestica HOM05D000395 ORTHO05D000088 1.9e-06 60.5 204 25.5
Nitab4.5_0000806g0040 Nicotiana tabacum HOM05D009106 ORTHO05D010235 1.9e-06 60.5 217 23.0
QL10p039053 Quercus lobata HOM05D000395 ORTHO05D000088 1.9e-06 60.5 97 29.9
SalBow1G4579 Salvia bowleyana HOM05D005797 ORTHO05D000088 1.9e-06 60.5 237 18.6
PGSC0003DMG400002785 Solanum tuberosum HOM05D000395 ORTHO05D010235 1.9e-06 60.5 136 29.4
BraA03t15130Z Brassica rapa HOM05D000888 ORTHO05D000740 2.5e-06 60.1 259 22.8
CSS0037658 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 2.5e-06 60.1 263 22.4
MD11G1250800 Malus domestica HOM05D000823 ORTHO05D000088 2.5e-06 60.1 214 23.8
PSO339G0204 Papaver somniferum HOM05D000395 ORTHO05D000088 2.5e-06 60.1 188 25.0
THA.LOC104819940 Tarenaya hassleriana HOM05D000888 ORTHO05D000740 2.5e-06 60.1 506 21.7
vmacro17887 Vaccinium macrocarpon HOM05D000395 ORTHO05D000088 2.5e-06 60.1 93 34.4
Gorai.004G260200 Gossypium raimondii HOM05D000395 ORTHO05D000088 3.2e-06 59.7 515 21.2
Cc00_g07580 Coffea canephora HOM05D000823 ORTHO05D000088 4.2e-06 59.3 254 20.5
ECA247G3085 Erigeron canadensis HOM05D000823 ORTHO05D000088 4.2e-06 59.3 294 22.8
RcHm_v2.0_Chr6g0259791 Rosa chinensis HOM05D000823 ORTHO05D000088 4.2e-06 59.3 90 32.2
Sopen02g034860 Solanum pennellii HOM05D000823 ORTHO05D000088 4.2e-06 59.3 109 29.4
arahy.Tifrunner.gnm1.ann1.T57XL4 Arachis hypogaea HOM05D000395 ORTHO05D000088 5.5e-06 58.9 258 20.5
CAN.G371.85 Capsicum annuum HOM05D000823 ORTHO05D000088 5.5e-06 58.9 308 22.4
Manes.10G031300 Manihot esculenta HOM05D000395 ORTHO05D000088 5.5e-06 58.9 118 27.1
Nitab4.5_0003237g0030 Nicotiana tabacum HOM05D000888 ORTHO05D000740 5.5e-06 58.9 243 22.6
Sopen08g002170 Solanum pennellii HOM05D000888 ORTHO05D000740 5.5e-06 58.9 269 23.0
SGA_v2.0_scaffold55G19766 Striga asiatica HOM05D000823 ORTHO05D000088 5.5e-06 58.9 243 20.2
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 7.2e-06 58.5 252 19.4
Ca_13967_v3 Cicer arietinum L. HOM05D000395 ORTHO05D000088 7.2e-06 58.5 233 22.7
PSO384G3645 Papaver somniferum HOM05D000395 ORTHO05D000088 7.2e-06 58.5 227 25.6
Phvul.005G000700 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 7.2e-06 58.5 281 22.8
PGSC0003DMG401009541 Solanum tuberosum HOM05D000888 ORTHO05D000740 7.2e-06 58.5 237 22.8
Thecc.01G046600 Theobroma cacao HOM05D000823 ORTHO05D000088 7.2e-06 58.5 113 27.4
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 7.2e-06 58.5 278 23.4
AT2G24700 Arabidopsis thaliana HOM05D000888 ORTHO05D000740 9.4e-06 58.2 238 23.1
Cfa015901 Carpinus fangiana HOM05D000395 ORTHO05D000088 9.4e-06 58.2 216 23.6
Migut.B01167 Erythranthe guttata HOM05D000823 ORTHO05D000088 9.4e-06 58.2 238 22.7
MBI16_g26333_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 9.4e-06 58.2 249 22.9
Nitab4.5_0001401g0140 Nicotiana tabacum HOM05D008110 ORTHO05D000088 9.4e-06 58.2 103 35.9
Nitab4.5_0002849g0010 Nicotiana tabacum HOM05D000888 ORTHO05D000740 9.4e-06 58.2 246 24.0
Oeu064570.1 Olea europaea HOM05D000888 ORTHO05D000740 9.4e-06 58.2 177 23.2
QL09p026224 Quercus lobata HOM05D000395 ORTHO05D000088 9.4e-06 58.2 288 21.5
SalBow1G6354 Salvia bowleyana HOM05D010976 ORTHO05D000088 9.4e-06 58.2 235 20.4


User provided reference genes

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