Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4333 Erigeron canadensis HOM05D003525 ORTHO05D004578 2.4e-59 231.9 112 100.0
ECA234G0118 Erigeron canadensis HOM05D003525 ORTHO05D004578 2.2e-23 112.5 58 87.9
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 2.4e-22 109.0 58 82.8
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 3.1e-22 108.6 58 84.5
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 4.1e-22 108.2 58 81.0
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 9.1e-22 107.1 58 84.5
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 1.6e-21 106.3 58 79.3
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 1.6e-21 106.3 58 79.3
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 1.6e-21 106.3 58 79.3
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 2.6e-21 105.5 58 79.3
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 3.5e-21 105.1 58 75.9
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 3.5e-21 105.1 58 79.3
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 3.5e-21 105.1 58 77.6
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 3.5e-21 105.1 58 79.3
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 3.5e-21 105.1 83 63.9
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 3.5e-21 105.1 58 77.6
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 4.5e-21 104.8 58 79.3
Eucgr.I01265 Eucalyptus grandis HOM05D003525 ORTHO05D004578 4.5e-21 104.8 58 77.6
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 4.5e-21 104.8 58 77.6
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 5.9e-21 104.4 58 77.6
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 5.9e-21 104.4 58 77.6
Dinv23526 Davidia involucrata HOM05D003525 ORTHO05D004578 5.9e-21 104.4 58 79.3
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 5.9e-21 104.4 58 77.6
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 5.9e-21 104.4 66 69.7
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 5.9e-21 104.4 66 69.7
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 5.9e-21 104.4 66 69.7
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 5.9e-21 104.4 90 61.1
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 5.9e-21 104.4 58 77.6
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 7.7e-21 104.0 56 80.4
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 77.6
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 77.6
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 77.6
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 77.6
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 77.6
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 77.6
Nitab4.5_0001361g0240 Nicotiana tabacum HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 75.9
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 75.9
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 77.6
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 7.7e-21 104.0 58 77.6
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 7.7e-21 104.0 70 68.6
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 1.0e-20 103.6 58 75.9
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.0e-20 103.6 58 75.9
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 1.0e-20 103.6 58 75.9
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 1.0e-20 103.6 58 77.6
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 1.0e-20 103.6 58 75.9
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 1.0e-20 103.6 58 75.9
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 1.3e-20 103.2 58 77.6
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 1.3e-20 103.2 58 77.6
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 1.3e-20 103.2 58 75.9
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 1.3e-20 103.2 58 75.9
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.3e-20 103.2 58 75.9
ATR0733G133 Amborella trichopoda HOM05D003525 ORTHO05D004578 1.7e-20 102.8 62 71.0
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 1.7e-20 102.8 58 75.9
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 1.7e-20 102.8 58 75.9
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 1.7e-20 102.8 58 77.6
Lalb_Chr08g0246641 Lupinus albus HOM05D003525 ORTHO05D004578 1.7e-20 102.8 58 75.9
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 1.7e-20 102.8 58 75.9
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 74.1
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 74.1
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 74.1
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 74.1
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 74.1
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 74.1
DCAR_028988 Daucus carota HOM05D003525 ORTHO05D004578 2.2e-20 102.4 59 76.3
ECA236G3498 Erigeron canadensis HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 77.6
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 77.6
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 2.2e-20 102.4 56 78.6
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 75.9
Sc18g0004490 Simmondsia chinensis HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 75.9
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 2.2e-20 102.4 58 75.9
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 2.9e-20 102.1 58 74.1
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 2.9e-20 102.1 58 75.9
Phvul.011G045700 Phaseolus vulgaris HOM05D003525 ORTHO05D004578 2.9e-20 102.1 58 75.9
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 3.8e-20 101.7 58 74.1
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 3.8e-20 101.7 58 75.9
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 3.8e-20 101.7 58 75.9
VMungo1127G1959 Vigna mungo HOM05D003525 ORTHO05D004578 3.8e-20 101.7 58 75.9
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 5.0e-20 101.3 58 75.9
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 5.0e-20 101.3 58 70.7
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 5.0e-20 101.3 58 72.4
Lalb_Chr23g0265401 Lupinus albus HOM05D003525 ORTHO05D004578 5.0e-20 101.3 58 74.1
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 5.0e-20 101.3 58 72.4
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 6.5e-20 100.9 58 74.1
Aqoxy6G01092 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 8.5e-20 100.5 58 72.4
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 8.5e-20 100.5 58 72.4
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 8.5e-20 100.5 58 72.4
THA.LOC104819606 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 8.5e-20 100.5 58 74.1
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 8.5e-20 100.5 58 72.4
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 1.1e-19 100.1 58 74.1
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 1.1e-19 100.1 58 70.7
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 1.1e-19 100.1 58 70.7
Ca_20867_v3 Cicer arietinum L. HOM05D003525 ORTHO05D004578 1.1e-19 100.1 58 72.4
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 1.1e-19 100.1 58 72.4
Medtr4g069960 Medicago truncatula HOM05D003525 ORTHO05D004578 1.1e-19 100.1 58 72.4
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 1.1e-19 100.1 58 75.9
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 1.5e-19 99.8 58 74.1
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.5e-19 99.8 58 72.4
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 1.5e-19 99.8 58 74.1
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 1.5e-19 99.8 58 74.1
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 1.5e-19 99.8 58 72.4
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.5e-19 99.8 58 74.1
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 1.9e-19 99.4 58 70.7
HanXRQChr16g0505731 Helianthus annuus HOM05D003525 ORTHO05D004578 1.9e-19 99.4 58 75.9
MBI16_g38644_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 1.9e-19 99.4 58 74.1
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 1.9e-19 99.4 58 75.9
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 2.5e-19 99.0 58 74.1
Os03g0722600 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 2.5e-19 99.0 90 57.8
Hund06230 Selenicereus undatus HOM05D003525 ORTHO05D004578 2.5e-19 99.0 58 70.7
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 3.2e-19 98.6 58 74.1
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 3.2e-19 98.6 58 70.7
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 3.2e-19 98.6 58 74.1
BcaC01g00903 Brassica carinata HOM05D003525 ORTHO05D004578 4.2e-19 98.2 58 69.0
C03p85740 Brassica napus HOM05D003525 ORTHO05D004578 4.2e-19 98.2 58 69.0
BolC3t20862H Brassica oleracea HOM05D003525 ORTHO05D004578 4.2e-19 98.2 58 69.0
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 4.2e-19 98.2 58 72.4
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 5.5e-19 97.8 58 70.7
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea HOM05D003525 ORTHO05D004578 5.5e-19 97.8 58 69.0
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea HOM05D003525 ORTHO05D004578 5.5e-19 97.8 58 69.0
CsaV3_7G023520 Cucumis sativus L. HOM05D003525 ORTHO05D004578 5.5e-19 97.8 55 74.5
MBI19_g07191_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 5.5e-19 97.8 58 72.4
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 5.5e-19 97.8 55 74.5
Zm00001eb055650 Zea mays HOM05D003525 ORTHO05D004578 5.5e-19 97.8 58 70.7
Zm00001eb215890 Zea mays HOM05D003525 ORTHO05D004578 5.5e-19 97.8 58 70.7
ClCG02G005050 Citrullus lanatus HOM05D003525 ORTHO05D004578 7.2e-19 97.4 55 74.5
A08p16780 Brassica napus HOM05D003525 ORTHO05D004578 9.4e-19 97.1 58 67.2
BraA08t33643Z Brassica rapa HOM05D003525 ORTHO05D004578 9.4e-19 97.1 58 67.2
MELO3C014785.2 Cucumis melo HOM05D003525 ORTHO05D004578 9.4e-19 97.1 55 74.5
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 9.4e-19 97.1 56 75.0
Oeu003718.1 Olea europaea HOM05D003525 ORTHO05D004578 9.4e-19 97.1 58 72.4
MELO3C019736.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.2e-18 96.7 55 70.9
Gohir.A03G194200 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.2e-18 96.7 58 74.1
Gohir.D02G215300 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.2e-18 96.7 58 74.1
Gorai.005G243200 Gossypium raimondii HOM05D003525 ORTHO05D004578 1.2e-18 96.7 58 74.1
Lsat_1_v5_gn_7_89340 Lactuca sativa HOM05D003525 ORTHO05D004578 1.2e-18 96.7 58 72.4
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 1.6e-18 96.3 58 72.4
MELO3C012526.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.6e-18 96.3 55 72.7
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 1.6e-18 96.3 58 72.4
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 1.6e-18 96.3 58 72.4
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 2.1e-18 95.9 53 77.4
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 2.7e-18 95.5 58 70.7
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 2.7e-18 95.5 58 70.7
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 2.7e-18 95.5 58 70.7
SEGI_09930 Sequoiadendron giganteum HOM05D003525 ORTHO05D004578 3.6e-18 95.1 58 69.0
unitig_8.g3568 Utricularia gibba HOM05D003525 ORTHO05D004578 3.6e-18 95.1 87 50.6
Psat7g184520 Pisum sativum HOM05D003525 ORTHO05D004578 4.7e-18 94.7 58 69.0
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 4.7e-18 94.7 58 72.4
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 4.7e-18 94.7 58 72.4
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 8.0e-18 94.0 58 72.4
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 8.0e-18 94.0 58 69.0
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 8.0e-18 94.0 58 69.0
HPP92_017152 Vanilla planifolia HOM05D003525 ORTHO05D004578 1.0e-17 93.6 58 67.2
Lj5A197T61 Lonicera japonica HOM05D003525 ORTHO05D004578 2.3e-17 92.4 58 65.5
unitig_22.g5174 Utricularia gibba HOM05D003525 ORTHO05D004578 2.3e-17 92.4 65 63.1
Migut.N01237 Erythranthe guttata HOM05D003525 ORTHO05D004578 3.0e-17 92.0 58 67.2
TPR.G333 Trifolium pratense HOM05D003525 ORTHO05D004578 3.0e-17 92.0 58 69.0
HPP92_017436 Vanilla planifolia HOM05D000653 ORTHO05D002177 8.8e-17 90.5 70 57.1
AagrBONN_evm.TU.Sc2ySwM_344.2699 Anthoceros agrestis HOM05D003525 ORTHO05D004578 2.0e-16 89.4 55 63.6
HanXRQChr04g0127991 Helianthus annuus HOM05D003525 ORTHO05D004578 2.0e-16 89.4 58 69.0
Pp3c4_1720 Physcomitrium patens HOM05D003525 ORTHO05D004578 2.6e-16 89.0 58 65.5
Sed0027089 Sechium edule HOM05D003525 ORTHO05D004578 3.3e-16 88.6 55 65.5
Mapoly0074s0004 Marchantia polymorpha HOM05D003525 ORTHO05D004578 4.4e-16 88.2 58 62.1
TPR.G14489 Trifolium pratense HOM05D003525 ORTHO05D004578 4.4e-16 88.2 80 53.8
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 9.7e-16 87.0 83 55.4
Actinidia27897 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.3e-15 86.7 46 78.3
Os08g0447900 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 1.4e-14 83.2 58 62.1
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 3.1e-14 82.0 60 60.0
CBR_g21060 Chara braunii HOM05D003525 ORTHO05D004578 5.3e-14 81.3 56 57.1
Zm00001eb040800 Zea mays HOM05D003525 ORTHO05D004578 2.0e-13 79.3 58 58.6
SMO174G0095 Selaginella moellendorffii HOM05D003525 ORTHO05D004578 2.7e-13 79.0 93 46.2
PRCOL_00002324 Prasinoderma coloniale HOM05D003525 ORTHO05D004578 5.0e-12 74.7 88 42.0
MCO10G181 Micromonas commoda HOM05D003525 ORTHO05D004578 1.9e-11 72.8 61 52.5
Cre06.g304100 Chlamydomonas reinhardtii HOM05D003525 ORTHO05D004578 4.4e-08 61.6 53 49.1
Atru.chr7.1490 Acer truncatum HOM05D003525 ORTHO05D037886 1.1e-06 57.0 32 71.9
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 9.1e-06 53.9 41 58.5


User provided reference genes

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