Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 9.6e-153 543.5 284 100.0
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 2.0e-137 492.7 284 84.9
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 5.3e-135 484.6 284 82.7
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.8e-127 459.5 284 75.4
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 8.5e-125 450.7 284 74.3
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.5e-124 449.9 281 75.4
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 4.2e-124 448.4 284 75.0
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 3.6e-123 445.3 284 74.3
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.0e-122 443.7 284 73.6
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.8e-122 443.0 281 74.7
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 2.3e-122 442.6 284 73.6
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 8.8e-122 440.7 283 74.6
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.5e-121 439.9 284 72.9
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 2.6e-121 439.1 284 73.9
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 7.5e-121 437.6 284 73.9
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 9.7e-121 437.2 284 72.5
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 9.7e-121 437.2 283 73.9
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.3e-120 436.8 284 73.6
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 1.3e-120 436.8 283 72.4
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.7e-120 436.4 284 71.5
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.7e-120 436.4 284 73.2
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 4.8e-120 434.9 284 72.9
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 1.4e-119 433.3 284 71.8
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 3.1e-119 432.2 284 71.8
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 4.1e-119 431.8 280 71.4
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 5.3e-119 431.4 284 78.2
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 7.0e-119 431.0 284 72.2
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 9.1e-119 430.6 284 71.1
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.6e-118 429.9 284 72.5
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 2.0e-118 429.5 284 70.4
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 4.5e-118 428.3 284 70.8
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 7.7e-118 427.6 282 70.9
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.0e-117 427.2 283 71.0
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.0e-117 427.2 283 71.0
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.3e-117 426.8 282 71.6
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 1.3e-117 426.8 283 71.7
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.7e-117 426.4 283 72.8
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.7e-117 426.4 284 71.5
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.2e-117 426.0 284 71.1
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 2.9e-117 425.6 283 71.7
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 6.5e-117 424.5 284 77.8
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 6.5e-117 424.5 284 77.8
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 6.5e-117 424.5 284 71.5
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 8.5e-117 424.1 282 71.3
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 8.5e-117 424.1 280 70.4
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.1e-116 423.7 280 70.4
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.5e-116 422.5 280 69.6
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.2e-116 422.2 281 71.2
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 5.5e-116 421.4 284 70.8
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 5.5e-116 421.4 298 74.8
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 7.2e-116 421.0 284 70.8
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 9.4e-116 420.6 280 69.6
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.2e-115 420.2 283 70.3
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 1.2e-115 420.2 288 70.1
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.6e-115 419.9 284 71.1
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.6e-115 419.9 284 71.5
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 2.1e-115 419.5 284 70.8
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 2.7e-115 419.1 270 73.3
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 3.6e-115 418.7 283 71.7
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 1.0e-114 417.2 284 71.5
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.0e-114 417.2 270 76.7
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.4e-114 416.8 284 70.4
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 1.8e-114 416.4 286 71.3
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 3.0e-114 415.6 278 69.4
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 4.0e-114 415.2 284 70.4
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.2e-113 413.7 281 70.5
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.2e-113 413.7 281 70.5
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.2e-113 413.7 281 70.5
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.0e-113 412.9 282 68.8
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 2.0e-113 412.9 281 69.8
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 3.4e-113 412.1 269 71.7
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 3.4e-113 412.1 283 71.4
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 7.5e-113 411.0 281 69.4
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 7.5e-113 411.0 281 69.4
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 1.7e-112 409.8 282 69.5
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 2.8e-112 409.1 284 68.0
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 3.7e-112 408.7 289 69.2
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 6.3e-112 407.9 282 68.1
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 8.3e-112 407.5 282 68.1
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 1.8e-111 406.4 281 68.7
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.8e-111 406.4 281 69.4
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 5.4e-111 404.8 281 68.7
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 5.4e-111 404.8 281 69.8
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 2.0e-110 402.9 281 68.3
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 4.5e-110 401.7 282 66.7
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 7.7e-110 401.0 314 63.4
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.3e-109 400.2 276 69.2
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 2.9e-109 399.1 311 63.3
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 8.5e-109 397.5 271 70.1
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 3.2e-108 395.6 269 69.9
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 2.1e-107 392.9 282 65.2
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 4.0e-106 388.7 281 65.8
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 6.8e-106 387.9 250 72.0
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.5e-105 386.7 270 67.0
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 5.7e-105 384.8 281 65.8
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.8e-103 379.8 251 71.7
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.3e-101 373.6 263 68.4
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 9.8e-97 357.5 251 64.5
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 9.8e-97 357.5 251 64.1
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 4.9e-96 355.1 266 64.3
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 3.2e-95 352.4 239 70.7
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 5.4e-95 351.7 259 62.2
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.0e-93 347.4 284 61.3
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.6e-91 339.0 190 79.5
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.4e-87 327.0 248 60.5
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 1.9e-84 316.6 282 54.6
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.2e-83 313.9 283 55.1
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.2e-81 307.4 421 42.8
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 8.3e-80 301.2 281 53.4
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.0e-77 294.3 144 89.6
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 3.9e-77 292.4 269 56.1
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.5e-76 289.7 167 74.9
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.6e-75 287.0 167 74.3
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 8.1e-75 284.6 309 48.9
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 4.0e-74 282.3 267 53.6
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 5.2e-74 282.0 168 73.2
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 2.6e-73 279.6 180 67.2
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 4.4e-73 278.9 406 41.1
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 9.9e-65 251.1 277 44.8
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.1e-63 247.7 155 71.6
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 1.3e-61 240.7 296 43.6
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 7.6e-57 224.9 147 66.0
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 9.3e-55 218.0 290 43.4
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 4.5e-49 199.1 248 44.8
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 3.2e-47 193.0 156 60.9
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.8e-43 179.1 135 65.9
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 9.0e-42 174.9 248 41.1
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 2.9e-40 169.9 143 60.8
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 2.5e-39 166.8 205 43.4
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 8.5e-32 141.7 110 59.1
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 1.4e-31 141.0 77 80.5
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.3e-27 127.9 72 72.2
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.3e-27 127.9 72 72.2
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 2.2e-27 127.1 70 78.6
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.6e-17 93.6 96 54.2
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 1.7e-16 90.9 73 61.6
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 8.5e-16 88.6 68 66.2
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 8.5e-16 88.6 69 65.2
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 5.5e-15 85.9 85 52.9
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 1.0e-13 81.6 92 50.0
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.0e-13 80.1 59 66.1
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.7e-08 64.3 169 27.8


User provided reference genes

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