Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4287 Erigeron canadensis HOM05D001603 ORTHO05D001393 2.2e-78 295.4 137 100.0
HanXRQChr10g0314171 Helianthus annuus HOM05D001603 ORTHO05D001393 3.8e-30 135.2 113 56.6
Lsat_1_v5_gn_5_93241 Lactuca sativa HOM05D001603 ORTHO05D001393 6.5e-22 107.8 104 47.1
Lsat_1_v5_gn_5_92780 Lactuca sativa HOM05D001603 ORTHO05D001393 2.3e-19 99.4 87 47.1
Thecc.09G136800 Theobroma cacao HOM05D001603 ORTHO05D001393 8.0e-12 74.3 66 45.5
Duzib187G1932 Durio zibethinus HOM05D001603 ORTHO05D001393 1.0e-11 73.9 75 42.7
ECA236G2357 Erigeron canadensis HOM05D001603 ORTHO05D001393 2.3e-11 72.8 117 35.0
Peaxi162Scf01694g00006 Petunia axillaris HOM05D001603 ORTHO05D001393 4.0e-11 72.0 76 42.1
CARHR154350 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.2e-10 70.5 71 45.1
COL.COLO4_33371 Corchorus olitorius HOM05D001603 ORTHO05D001393 2.6e-10 69.3 79 40.5
Atru.chr7.1961 Acer truncatum HOM05D001603 ORTHO05D001393 4.4e-10 68.6 66 42.4
Aqoxy6G02760 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 5.7e-10 68.2 72 43.1
C04p54600 Brassica napus HOM05D001603 ORTHO05D001393 9.8e-10 67.4 65 43.1
Aqoxy6G02757 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 1.3e-09 67.0 64 42.2
C04p54650 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-09 67.0 65 43.1
Atru.chr11.1201 Acer truncatum HOM05D001603 ORTHO05D001393 1.7e-09 66.6 83 39.8
BcaC02g08400 Brassica carinata HOM05D001603 ORTHO05D001393 1.7e-09 66.6 65 43.1
BcaC02g08405 Brassica carinata HOM05D001603 ORTHO05D001393 1.7e-09 66.6 65 43.1
C04p54690 Brassica napus HOM05D001603 ORTHO05D001393 1.7e-09 66.6 65 43.1
BolC4t27013H Brassica oleracea HOM05D001603 ORTHO05D001393 1.7e-09 66.6 65 43.1
Carub.0008s1450 Capsella rubella HOM05D001603 ORTHO05D001393 1.7e-09 66.6 65 43.1
Atru.chr7.1960 Acer truncatum HOM05D001603 ORTHO05D001393 2.2e-09 66.2 66 40.9
Carub.0008s1404 Capsella rubella HOM05D001603 ORTHO05D001393 2.2e-09 66.2 65 43.1
PSO384G2124 Papaver somniferum HOM05D001603 ORTHO05D001393 2.2e-09 66.2 85 38.8
Atru.chr11.1514 Acer truncatum HOM05D001603 ORTHO05D001393 2.8e-09 65.9 80 38.8
BcaC02g08401 Brassica carinata HOM05D001603 ORTHO05D001393 2.8e-09 65.9 65 43.1
BolC4t27011H Brassica oleracea HOM05D001603 ORTHO05D001393 2.8e-09 65.9 65 43.1
Carub.0008s1435 Capsella rubella HOM05D001603 ORTHO05D001393 2.8e-09 65.9 67 40.3
Lj7C438T17 Lonicera japonica HOM05D001603 ORTHO05D001393 2.8e-09 65.9 84 36.9
TWI34G1934 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 2.8e-09 65.9 64 40.6
AL8G27490 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 3.7e-09 65.5 75 37.3
BcaC02g08403 Brassica carinata HOM05D001603 ORTHO05D001393 4.8e-09 65.1 65 43.1
BcaC02g08407 Brassica carinata HOM05D001603 ORTHO05D001393 4.8e-09 65.1 65 43.1
C04p53860 Brassica napus HOM05D001603 ORTHO05D001393 4.8e-09 65.1 65 43.1
BolC4t27006H Brassica oleracea HOM05D001603 ORTHO05D001393 4.8e-09 65.1 65 43.1
Carub.0008s1421 Capsella rubella HOM05D001603 ORTHO05D001393 4.8e-09 65.1 65 41.5
Aqoxy6G02756 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 6.3e-09 64.7 87 32.2
BcaB01g04253 Brassica carinata HOM05D001603 ORTHO05D001393 6.3e-09 64.7 67 40.3
Sc18g0000140 Simmondsia chinensis HOM05D001603 ORTHO05D001393 6.3e-09 64.7 76 38.2
RcHm_v2.0_Chr2g0131141 Rosa chinensis HOM05D001603 ORTHO05D001393 8.3e-09 64.3 64 42.2
Thecc.09G136900 Theobroma cacao HOM05D001603 ORTHO05D001393 8.3e-09 64.3 80 35.0
A03p15020 Brassica napus HOM05D001603 ORTHO05D001393 1.1e-08 63.9 67 38.8
BolC3t14164H Brassica oleracea HOM05D001603 ORTHO05D001393 1.1e-08 63.9 67 38.8
BraA03t10796Z Brassica rapa HOM05D001603 ORTHO05D001393 1.1e-08 63.9 67 38.8
CARHR267050 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.1e-08 63.9 75 36.0
BcaC01g06264 Brassica carinata HOM05D001603 ORTHO05D001393 1.4e-08 63.5 67 38.8
C03p17510 Brassica napus HOM05D001603 ORTHO05D001393 1.4e-08 63.5 67 38.8
A03p28440 Brassica napus HOM05D001603 ORTHO05D001393 1.8e-08 63.2 75 33.3
C03p34370 Brassica napus HOM05D001603 ORTHO05D001393 1.8e-08 63.2 75 33.3
BolC3t15747H Brassica oleracea HOM05D001603 ORTHO05D001393 1.8e-08 63.2 75 33.3
BraA03t12049Z Brassica rapa HOM05D001603 ORTHO05D001393 1.8e-08 63.2 75 33.3
Atru.chr7.2004 Acer truncatum HOM05D001603 ORTHO05D001393 2.4e-08 62.8 66 37.9
RcHm_v2.0_Chr2g0131241 Rosa chinensis HOM05D001603 ORTHO05D001393 2.4e-08 62.8 64 42.2
TWI34G1802 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 2.4e-08 62.8 69 39.1
AL8G27470 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 3.1e-08 62.4 67 35.8
AT4G35165 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.1e-08 62.4 73 35.6
AT5G54062 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 3.1e-08 62.4 65 38.5
Thhalv10029475m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 3.1e-08 62.4 75 34.7
FAN06G4924 Fragaria x ananassa HOM05D001603 ORTHO05D001393 4.1e-08 62.0 72 38.9
PSO541G0615 Papaver somniferum HOM05D001603 ORTHO05D001393 4.1e-08 62.0 85 36.5
AL8G27510 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 5.4e-08 61.6 67 35.8
AL8G40580 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 5.4e-08 61.6 83 36.1
AT5G52965 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.4e-08 61.6 67 35.8
AT5G52975 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 5.4e-08 61.6 67 35.8
BcaB07g29691 Brassica carinata HOM05D001603 ORTHO05D001393 5.4e-08 61.6 74 35.1
Thhalv10005396m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 5.4e-08 61.6 67 35.8
RcHm_v2.0_Chr2g0131221 Rosa chinensis HOM05D001603 ORTHO05D001393 5.4e-08 61.6 64 40.6
BcaB07g30090 Brassica carinata HOM05D001603 ORTHO05D001393 7.0e-08 61.2 65 35.4
Carub.0008s1315 Capsella rubella HOM05D001603 ORTHO05D001393 7.0e-08 61.2 67 35.8
Gohir.D08G101050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 7.0e-08 61.2 63 36.5
Gorai.004G109000 Gossypium raimondii HOM05D001603 ORTHO05D001393 7.0e-08 61.2 63 36.5
AL4G21270 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 9.1e-08 60.8 67 37.3
AL7G16040 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 9.1e-08 60.8 73 34.2
Carub.0004s0795 Capsella rubella HOM05D001603 ORTHO05D001393 9.1e-08 60.8 67 37.3
CARHR243480 Cardamine hirsuta HOM05D001603 ORTHO05D001393 9.1e-08 60.8 73 37.0
CARHR277370 Cardamine hirsuta HOM05D001603 ORTHO05D001393 9.1e-08 60.8 80 35.0
RcHm_v2.0_Chr2g0087141 Rosa chinensis HOM05D001603 ORTHO05D001393 9.1e-08 60.8 75 36.0
Aqoxy1G00790 Aquilegia oxysepala HOM05D001603 ORTHO05D001393 1.2e-07 60.5 80 31.2
Carub.0008s1317 Capsella rubella HOM05D001603 ORTHO05D001393 1.2e-07 60.5 75 36.0
A02p42780 Brassica napus HOM05D001603 ORTHO05D001393 1.6e-07 60.1 66 34.8
C02p62770 Brassica napus HOM05D001603 ORTHO05D001393 1.6e-07 60.1 72 33.3
BolC2t12348H Brassica oleracea HOM05D001603 ORTHO05D001393 1.6e-07 60.1 72 33.3
BraA02t09204Z Brassica rapa HOM05D001603 ORTHO05D001393 1.6e-07 60.1 66 34.8
Carub.0007s0514 Capsella rubella HOM05D001603 ORTHO05D001393 1.6e-07 60.1 73 34.2
Carub.0008s0802 Capsella rubella HOM05D001603 ORTHO05D001393 1.6e-07 60.1 75 34.7
CARHR042990 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.6e-07 60.1 70 37.1
Sp6g15130 Schrenkiella parvula HOM05D001603 ORTHO05D001393 1.6e-07 60.1 67 34.3
MD02G1018800 Malus domestica HOM05D001603 ORTHO05D001393 2.0e-07 59.7 79 35.4
Rhsim01G0055200 Rhododendron simsii HOM05D001603 ORTHO05D001393 2.0e-07 59.7 70 35.7
Sp6g09890 Schrenkiella parvula HOM05D001603 ORTHO05D001393 2.0e-07 59.7 67 35.8
AT2G14378 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.7e-07 59.3 73 32.9
Carub.0008s2422 Capsella rubella HOM05D001603 ORTHO05D001393 2.7e-07 59.3 73 34.2
CARHR119910 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.7e-07 59.3 67 34.3
CARHR157430 Cardamine hirsuta HOM05D001603 ORTHO05D001393 2.7e-07 59.3 78 33.3
DCAR_021856 Daucus carota HOM05D012509 ORTHO05D009596 2.7e-07 59.3 104 31.7
Thhalv10005546m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 2.7e-07 59.3 75 33.3
Gorai.004G109100 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.7e-07 59.3 73 38.4
A02p42790 Brassica napus HOM05D001603 ORTHO05D001393 3.5e-07 58.9 66 34.8
BraA02t09205Z Brassica rapa HOM05D001603 ORTHO05D001393 3.5e-07 58.9 66 34.8
Carub.0008s2423 Capsella rubella HOM05D001603 ORTHO05D001393 3.5e-07 58.9 67 34.3
RcHm_v2.0_Chr2g0087131 Rosa chinensis HOM05D001603 ORTHO05D001393 3.5e-07 58.9 73 38.4
TWI34G1530 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 3.5e-07 58.9 75 34.7
BcaB05g21994 Brassica carinata HOM05D001603 ORTHO05D001393 4.5e-07 58.5 67 32.8
BcaC03g18210 Brassica carinata HOM05D001603 ORTHO05D001393 4.5e-07 58.5 72 31.9
Thhalv10005158m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 4.5e-07 58.5 65 35.4
Nn2g12175 Nelumbo nucifera HOM05D001603 ORTHO05D001393 4.5e-07 58.5 66 34.8
PGSC0003DMG400004472 Solanum tuberosum HOM05D001603 ORTHO05D001393 4.5e-07 58.5 77 37.7
vmacro07747 Vaccinium macrocarpon HOM05D001603 ORTHO05D001393 4.5e-07 58.5 65 32.3
CARHR265940 Cardamine hirsuta HOM05D001603 ORTHO05D001393 5.9e-07 58.2 75 33.3
Migut.K00395 Erythranthe guttata HOM05D001603 ORTHO05D001393 5.9e-07 58.2 81 35.8
Thhalv10016069m.g Eutrema salsugineum HOM05D001603 ORTHO05D001393 5.9e-07 58.2 65 38.5
Aa31LG5G23090 Aethionema arabicum HOM05D001603 ORTHO05D001393 7.7e-07 57.8 73 35.6
C02p18980 Brassica napus HOM05D001603 ORTHO05D001393 7.7e-07 57.8 75 33.3
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 7.7e-07 57.8 73 35.6
CARHR266380 Cardamine hirsuta HOM05D001603 ORTHO05D001393 7.7e-07 57.8 66 36.4
CARHR267040 Cardamine hirsuta HOM05D001603 ORTHO05D001393 7.7e-07 57.8 70 38.6
Gohir.D08G101100 Gossypium hirsutum HOM05D001603 ORTHO05D001393 7.7e-07 57.8 73 38.4
AT3G48675 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.0e-06 57.4 72 33.3
Peaxi162Scf01147g00112 Petunia axillaris HOM05D001603 ORTHO05D001393 1.0e-06 57.4 65 44.6
Rhsim01G0050200 Rhododendron simsii HOM05D001603 ORTHO05D001393 1.0e-06 57.4 37 51.4
TWI63G0036 Tripterygium wilfordii HOM05D001603 ORTHO05D001393 1.0e-06 57.4 74 32.4
AT2G27315 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 36.0
AT5G53742 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 1.3e-06 57.0 64 39.1
BcaC06g33682 Brassica carinata HOM05D001603 ORTHO05D001393 1.3e-06 57.0 73 34.2
A06p40030 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 57.0 73 34.2
C02p19000 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 32.0
C02p19070 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 32.0
C02p19090 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 32.0
C02p19110 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 32.0
C02p19140 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 32.0
C07p38140 Brassica napus HOM05D001603 ORTHO05D001393 1.3e-06 57.0 73 34.2
BolC2t08039H Brassica oleracea HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 32.0
BolC2t08041H Brassica oleracea HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 32.0
BolC2t08043H Brassica oleracea HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 32.0
BolC7t44336H Brassica oleracea HOM05D001603 ORTHO05D001393 1.3e-06 57.0 73 34.2
BraA06t26918Z Brassica rapa HOM05D001603 ORTHO05D001393 1.3e-06 57.0 73 34.2
CARHR265960 Cardamine hirsuta HOM05D001603 ORTHO05D001393 1.3e-06 57.0 75 33.3
Dinv11833 Davidia involucrata HOM05D001603 ORTHO05D001393 1.3e-06 57.0 66 34.8
Gorai.013G023600 Gossypium raimondii HOM05D001603 ORTHO05D001393 1.3e-06 57.0 63 36.5
Gorai.013G023700 Gossypium raimondii HOM05D001603 ORTHO05D001393 1.3e-06 57.0 63 36.5
AL5G28100 Arabidopsis lyrata HOM05D001603 ORTHO05D001393 1.7e-06 56.6 75 37.3
A02p11400 Brassica napus HOM05D001603 ORTHO05D001393 1.7e-06 56.6 75 33.3
C02p19030 Brassica napus HOM05D001603 ORTHO05D001393 1.7e-06 56.6 75 32.0
BolC2t08034H Brassica oleracea HOM05D001603 ORTHO05D001393 1.7e-06 56.6 75 33.3
BolC2t08038H Brassica oleracea HOM05D001603 ORTHO05D001393 1.7e-06 56.6 75 32.0
AT5G53905 Arabidopsis thaliana HOM05D001603 ORTHO05D001393 2.3e-06 56.2 89 34.8
A02p11440 Brassica napus HOM05D001603 ORTHO05D001393 2.3e-06 56.2 67 32.8
C02p18920 Brassica napus HOM05D001603 ORTHO05D001393 2.3e-06 56.2 75 32.0
Lj7A438G59 Lonicera japonica HOM05D001603 ORTHO05D001393 2.3e-06 56.2 64 40.6
GSVIVG01022286001 Vitis vinifera HOM05D001595 ORTHO05D001573 2.3e-06 56.2 80 37.5
BcaC03g14478 Brassica carinata HOM05D001603 ORTHO05D001393 2.9e-06 55.8 75 32.0
C02p19050 Brassica napus HOM05D001603 ORTHO05D001393 2.9e-06 55.8 75 32.0
Gohir.D13G021050 Gossypium hirsutum HOM05D001603 ORTHO05D001393 2.9e-06 55.8 36 55.6
Gorai.N025500 Gossypium raimondii HOM05D001603 ORTHO05D001393 2.9e-06 55.8 36 55.6
RcHm_v2.0_Chr1g0323971 Rosa chinensis HOM05D001603 ORTHO05D001393 2.9e-06 55.8 78 34.6
BcaC03g14471 Brassica carinata HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BcaC03g14473 Brassica carinata HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BcaC03g14476 Brassica carinata HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BcaC03g14477 Brassica carinata HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BcaC03g14480 Brassica carinata HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
A02p11420 Brassica napus HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
A02p11430 Brassica napus HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
C02p18930 Brassica napus HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
C02p18950 Brassica napus HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
C02p18990 Brassica napus HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BolC2t08033H Brassica oleracea HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BolC2t08037H Brassica oleracea HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BraA02t06205Z Brassica rapa HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BraA02t06207Z Brassica rapa HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BraA02t06208Z Brassica rapa HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BraA02t06211Z Brassica rapa HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
BraA02t06212Z Brassica rapa HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 32.0
COL.COLO4_24892 Corchorus olitorius HOM05D001603 ORTHO05D001393 3.8e-06 55.5 62 37.1
Rhsim03G0252800 Rhododendron simsii HOM05D001603 ORTHO05D001393 3.8e-06 55.5 75 33.3
Sopen05g005970 Solanum pennellii HOM05D001603 ORTHO05D001393 3.8e-06 55.5 76 34.2
BcaB05g21995 Brassica carinata HOM05D001603 ORTHO05D001393 5.0e-06 55.1 75 32.0
C04p54670 Brassica napus HOM05D001603 ORTHO05D001393 5.0e-06 55.1 65 36.9
BraA02t06210Z Brassica rapa HOM05D001603 ORTHO05D001393 5.0e-06 55.1 73 32.9
CSS0032619 Camellia sinensis var. sinensis HOM05D001603 ORTHO05D001393 6.6e-06 54.7 63 36.5
Gohir.A13G020450 Gossypium hirsutum HOM05D001603 ORTHO05D001393 6.6e-06 54.7 36 52.8
Potri.001G306600 Populus trichocarpa HOM05D001595 ORTHO05D001573 8.6e-06 54.3 114 31.6
RcHm_v2.0_Chr2g0149601 Rosa chinensis HOM05D001603 ORTHO05D001393 8.6e-06 54.3 67 32.8


User provided reference genes

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