Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 1.5e-207 726.1 406 100.0
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.3e-155 552.7 407 72.0
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.5e-135 486.9 410 71.0
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 6.4e-126 454.9 409 62.6
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 4.6e-124 448.7 405 66.2
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.8e-120 436.8 395 61.5
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 4.5e-119 432.2 404 59.7
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 1.1e-117 427.6 407 59.2
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 7.1e-117 424.9 409 60.1
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 1.6e-116 423.7 406 58.4
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 7.9e-116 421.4 404 60.1
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 7.9e-116 421.4 406 58.1
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.0e-115 421.0 401 58.9
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 1.3e-115 420.6 406 58.1
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.3e-115 420.6 408 58.3
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 3.0e-115 419.5 405 57.3
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.9e-115 419.1 404 58.9
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 6.7e-115 418.3 403 58.3
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.7e-115 417.9 404 58.4
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 3.3e-114 416.0 411 58.6
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 4.3e-114 415.6 408 59.6
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 7.4e-114 414.8 409 57.0
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 2.2e-113 413.3 434 54.1
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 6.3e-113 411.8 408 57.4
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.2e-113 411.4 404 57.9
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 8.2e-113 411.4 406 56.9
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 8.2e-113 411.4 406 56.9
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 2.4e-112 409.8 409 58.2
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 5.3e-112 408.7 408 57.4
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 2.0e-111 406.8 412 63.8
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.5e-111 405.6 407 58.7
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 2.2e-110 403.3 409 56.5
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 2.9e-110 402.9 398 55.5
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.9e-109 400.2 402 57.0
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 4.2e-109 399.1 411 55.5
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 4.2e-109 399.1 425 54.4
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 5.5e-109 398.7 407 56.3
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 7.2e-109 398.3 395 57.2
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.1e-108 396.7 404 55.2
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 2.7e-108 396.4 404 55.2
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.8e-107 393.7 411 56.0
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 3.9e-107 392.5 404 55.0
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 6.7e-107 391.7 395 55.4
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.1e-106 391.0 410 56.1
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.1e-106 391.0 410 54.9
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.5e-106 390.6 409 55.3
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 1.5e-106 390.6 412 56.1
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.5e-106 390.6 387 56.8
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 5.7e-106 388.7 425 52.0
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 7.4e-106 388.3 414 53.6
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 9.7e-106 387.9 423 53.7
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 9.7e-106 387.9 407 55.0
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 2.2e-105 386.7 407 53.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 2.2e-105 386.7 399 58.6
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.7e-105 386.0 413 53.3
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 8.2e-105 384.8 389 58.9
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 1.1e-104 384.4 414 53.9
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 6.9e-104 381.7 407 53.8
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 2.0e-103 380.2 404 55.0
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 3.4e-103 379.4 399 52.4
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.4e-103 379.4 355 58.3
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 4.5e-103 379.0 382 54.5
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.0e-102 377.9 416 52.6
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.0e-102 377.9 412 53.6
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 1.3e-102 377.5 391 55.2
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.2e-102 376.7 382 54.2
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 6.5e-102 375.2 410 53.2
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 7.2e-101 371.7 409 52.1
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.6e-100 370.5 452 50.9
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.1e-100 370.2 355 58.3
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.1e-100 370.2 386 52.8
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.0e-99 367.9 386 52.6
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 3.9e-99 365.9 417 51.1
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 6.7e-99 365.2 410 52.9
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.5e-98 364.0 385 56.4
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 2.0e-98 363.6 407 51.4
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 3.3e-98 362.8 334 60.5
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.3e-98 362.8 392 52.3
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.3e-97 360.9 386 55.4
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.2e-97 360.1 403 55.8
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 6.3e-97 358.6 369 55.3
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.8e-96 357.1 407 51.4
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 7.7e-95 351.7 506 45.3
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.7e-91 338.6 500 44.6
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.6e-90 336.7 405 48.6
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 4.4e-90 335.9 402 50.5
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 7.4e-90 335.1 407 48.2
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 7.4e-90 335.1 405 47.9
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 8.2e-89 331.6 384 52.6
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 8.2e-89 331.6 397 50.1
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.4e-88 330.9 405 47.9
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 7.0e-88 328.6 409 47.7
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.0e-87 327.0 374 53.7
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 5.9e-87 325.5 396 47.2
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 7.7e-87 325.1 392 49.2
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 8.5e-86 321.6 397 47.6
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 1.2e-84 317.8 397 47.4
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.7e-84 316.6 402 46.0
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.8e-83 313.9 397 47.4
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.3e-83 313.5 434 45.4
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 7.5e-82 308.5 398 47.2
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.4e-80 303.5 396 46.0
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.3e-78 297.7 414 43.5
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 2.2e-73 280.4 407 44.0
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.2e-73 280.4 336 53.0
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 4.2e-69 266.2 405 45.2
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.6e-68 264.2 379 47.0
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.2e-66 258.1 289 52.9
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 2.6e-66 256.9 361 44.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 4.4e-58 229.6 348 43.1
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 1.1e-56 224.9 341 42.5
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.4e-56 222.6 338 43.8
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 7.8e-55 218.8 360 42.2
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 4.3e-53 213.0 321 46.7
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 3.6e-52 209.9 241 54.4
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 2.6e-50 203.8 237 49.8
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.3e-49 201.4 430 35.1
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 6.4e-41 172.6 216 45.4
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.3e-38 164.1 417 32.9
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.1e-29 135.2 135 54.1
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.3e-29 133.3 353 30.9
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 5.3e-27 126.3 149 47.7
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 5.3e-27 126.3 149 47.7
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 4.6e-23 113.2 136 47.1
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 8.7e-22 109.0 166 44.6
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 3.3e-21 107.1 127 47.2
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.3e-21 106.7 115 53.0
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.3e-20 105.1 271 31.0
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 4.8e-20 103.2 72 80.6
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 9.0e-19 99.0 98 62.2
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.3e-14 84.3 58 75.9
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.1e-14 83.2 156 39.7
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 1.1e-11 75.5 39 76.9
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.8e-09 67.0 93 41.9
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.1e-08 62.8 47 70.2
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 4.6e-07 60.1 49 61.2
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 4.6e-07 60.1 123 37.4
HanXRQChr04g0115431 Helianthus annuus HOM05D005133 ORTHO05D006685 5.1e-06 56.6 37 67.6


User provided reference genes

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