Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 4.2e-72 274.6 142 100.0
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 1.3e-52 209.9 145 82.1
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 8.2e-52 207.2 144 79.9
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.2e-47 193.4 140 72.1
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 2.6e-45 185.7 142 69.0
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 1.7e-44 183.0 140 71.4
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 2.8e-44 182.2 140 68.6
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 6.3e-44 181.0 107 81.3
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 8.2e-44 180.6 142 67.6
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 8.2e-44 180.6 128 72.7
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 1.1e-43 180.3 142 67.6
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.8e-43 179.5 143 69.9
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 2.4e-43 179.1 107 79.4
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 2.4e-43 179.1 140 69.3
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 2.4e-43 179.1 140 70.0
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 3.1e-43 178.7 140 68.6
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 3.1e-43 178.7 139 67.6
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 3.1e-43 178.7 140 65.7
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 3.1e-43 178.7 140 69.3
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 3.1e-43 178.7 140 66.4
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 4.1e-43 178.3 143 67.8
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 4.1e-43 178.3 125 72.8
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 5.3e-43 177.9 140 67.1
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 5.3e-43 177.9 140 67.1
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 5.3e-43 177.9 141 68.1
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 5.3e-43 177.9 139 69.8
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 6.9e-43 177.6 140 66.4
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 6.9e-43 177.6 140 66.4
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 6.9e-43 177.6 140 67.1
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 9.1e-43 177.2 140 68.6
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.5e-42 176.4 140 68.6
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.5e-42 176.4 140 66.4
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 2.6e-42 175.6 142 64.8
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 3.4e-42 175.3 140 67.1
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 3.4e-42 175.3 140 67.9
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.4e-42 175.3 140 66.4
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 3.4e-42 175.3 140 69.3
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 4.5e-42 174.9 142 63.4
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 4.5e-42 174.9 143 68.5
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 5.9e-42 174.5 140 65.0
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 7.7e-42 174.1 140 65.7
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 7.7e-42 174.1 139 65.5
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 1.0e-41 173.7 142 67.6
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 1.0e-41 173.7 146 65.8
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 1.7e-41 172.9 140 67.9
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 1.7e-41 172.9 107 76.6
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 2.9e-41 172.2 141 66.7
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 3.8e-41 171.8 140 65.7
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 5.0e-41 171.4 140 67.1
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 5.0e-41 171.4 142 67.6
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 6.5e-41 171.0 137 67.2
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 6.5e-41 171.0 140 65.7
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.4e-40 169.9 143 65.7
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 1.4e-40 169.9 141 67.4
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 1.9e-40 169.5 143 65.7
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 2.5e-40 169.1 140 62.9
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.5e-40 169.1 143 62.9
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 3.2e-40 168.7 140 62.1
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 4.2e-40 168.3 140 65.0
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 5.5e-40 167.9 142 61.3
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 5.5e-40 167.9 140 66.4
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 7.2e-40 167.5 140 64.3
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 9.4e-40 167.2 140 64.3
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 9.4e-40 167.2 115 74.8
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 1.2e-39 166.8 144 63.9
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 1.2e-39 166.8 144 63.9
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 2.1e-39 166.0 129 64.3
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 2.1e-39 166.0 142 60.6
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 3.6e-39 165.2 124 69.4
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 3.6e-39 165.2 140 64.3
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 3.6e-39 165.2 106 76.4
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 4.7e-39 164.9 144 63.9
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 4.7e-39 164.9 141 64.5
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 6.1e-39 164.5 140 64.3
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 7.9e-39 164.1 140 62.9
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.0e-38 163.7 121 72.7
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 3.0e-38 162.2 121 71.9
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 3.0e-38 162.2 141 60.3
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 5.2e-38 161.4 143 59.4
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 6.7e-38 161.0 135 64.4
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 6.7e-38 161.0 145 62.8
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 8.8e-38 160.6 141 63.8
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.1e-37 160.2 140 64.3
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.1e-37 160.2 140 63.6
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.5e-37 159.8 140 62.1
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 2.6e-37 159.1 124 64.5
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 2.6e-37 159.1 106 74.5
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 9.7e-37 157.1 107 72.9
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 1.3e-36 156.8 138 59.4
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.7e-36 156.4 143 58.0
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 1.7e-36 156.4 134 60.4
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 2.2e-36 156.0 123 63.4
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 6.3e-36 154.5 90 85.6
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 8.2e-36 154.1 142 57.7
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 1.1e-35 153.7 147 59.2
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.1e-35 153.7 145 60.7
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 1.4e-35 153.3 97 77.3
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 2.4e-35 152.5 135 63.7
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 4.1e-35 151.8 142 59.9
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 5.3e-35 151.4 142 57.7
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 5.3e-35 151.4 172 52.3
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 1.2e-34 150.2 145 58.6
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.2e-34 150.2 88 80.7
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.6e-34 149.8 143 56.6
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 1.6e-34 149.8 145 57.2
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 2.6e-34 149.1 147 57.1
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 7.7e-34 147.5 107 67.3
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 1.0e-33 147.1 143 55.2
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 1.0e-33 147.1 143 55.2
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 1.0e-33 147.1 143 55.2
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 1.7e-33 146.4 143 55.9
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 1.7e-33 146.4 142 55.6
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.9e-33 145.6 159 56.0
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 5.0e-33 144.8 143 53.8
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 2.5e-32 142.5 130 61.5
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 2.5e-32 142.5 148 54.1
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 7.2e-32 141.0 197 44.2
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 3.6e-31 138.7 89 75.3
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 1.4e-30 136.7 134 53.7
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 1.4e-30 136.7 123 64.2
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 6.7e-30 134.4 89 68.5
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 2.6e-29 132.5 131 54.2
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 7.5e-29 131.0 145 53.1
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 2.8e-28 129.0 153 52.3
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 1.8e-27 126.3 70 84.3
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 7.0e-27 124.4 144 49.3
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 7.7e-26 120.9 97 66.0
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 1.0e-25 120.6 96 58.3
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 2.2e-25 119.4 144 47.9
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 2.7e-23 112.5 77 74.0
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 8.0e-23 110.9 136 42.6
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 1.2e-21 107.1 74 71.6
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 1.8e-19 99.8 99 61.6
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 4.5e-18 95.1 77 67.5
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 8.6e-17 90.9 65 69.2
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 7.2e-16 87.8 91 57.1
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.6e-13 79.3 85 56.5
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 4.5e-10 68.6 42 81.0
MD00G1150500 Malus domestica HOM05D005488 ORTHO05D006568 1.1e-08 63.9 37 78.4
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 4.7e-07 58.5 73 53.4
AUR62028287 Chenopodium quinoa HOM05D002686 ORTHO05D003222 1.8e-06 56.6 105 33.3
Os02g0781400 Oryza sativa ssp. japonica HOM05D002686 ORTHO05D003222 1.8e-06 56.6 137 31.4
EL10Ac8g19011 Beta vulgaris HOM05D002686 ORTHO05D003222 3.0e-06 55.8 105 32.4
THA.LOC104810987 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 3.0e-06 55.8 120 34.2
AUR62025283 Chenopodium quinoa HOM05D002686 ORTHO05D003222 4.0e-06 55.5 150 28.7
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 5.2e-06 55.1 141 30.5
THA.LOC104799611 Tarenaya hassleriana HOM05D002686 ORTHO05D003222 5.2e-06 55.1 104 33.7
SEGI_38857 Sequoiadendron giganteum HOM05D002686 ORTHO05D003222 6.8e-06 54.7 139 31.7
Ah.09g229170 Amaranthus hybridus HOM05D002686 ORTHO05D003222 8.9e-06 54.3 150 28.0


User provided reference genes

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