Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4133 Erigeron canadensis HOM05D003417 ORTHO05D003925 1.5e-78 296.2 156 100.0
HanXRQChr17g0557071 Helianthus annuus HOM05D003417 ORTHO05D003925 6.7e-47 191.0 158 67.7
Lsat_1_v5_gn_4_36021 Lactuca sativa HOM05D003417 ORTHO05D003925 9.3e-41 170.6 140 68.6
Duzib248G0310 Durio zibethinus HOM05D003417 ORTHO05D003925 7.7e-19 97.8 157 39.5
RcHm_v2.0_Chr4g0428531 Rosa chinensis HOM05D003417 ORTHO05D003925 2.2e-18 96.3 166 39.8
FAN07G2334 Fragaria x ananassa HOM05D003417 ORTHO05D003925 3.2e-17 92.4 108 49.1
FAN12G1056 Fragaria x ananassa HOM05D003417 ORTHO05D003925 3.2e-17 92.4 108 49.1
FvH4_4g22290 Fragaria vesca HOM05D003417 ORTHO05D003925 9.4e-17 90.9 166 39.2
FAN17G1846 Fragaria x ananassa HOM05D003417 ORTHO05D003925 9.4e-17 90.9 166 38.6
QL04p039539 Quercus lobata HOM05D003417 ORTHO05D003925 1.6e-16 90.1 156 37.2
QL93p0170_0146 Quercus lobata HOM05D003417 ORTHO05D003925 1.6e-16 90.1 137 35.8
CANSAT56G4330 Cannabis sativa HOM05D003417 ORTHO05D003925 1.0e-15 87.4 157 38.2
Manes.09G173000 Manihot esculenta HOM05D003417 ORTHO05D003925 1.8e-15 86.7 139 37.4
Haze_12521 Corylus avellana HOM05D003417 ORTHO05D003925 3.0e-15 85.9 130 34.6
FAN08G0820 Fragaria x ananassa HOM05D003417 ORTHO05D003925 3.9e-15 85.5 146 33.6
CiPaw.05G099200 Carya illinoinensis HOM05D003417 ORTHO05D003925 5.2e-15 85.1 157 33.8
Sed0017226 Sechium edule HOM05D003417 ORTHO05D003925 8.8e-15 84.3 123 38.2
Potri.003G160700 Populus trichocarpa HOM05D003417 ORTHO05D003925 1.1e-14 84.0 102 44.1
Sabra03G0116900 Salix brachista HOM05D003417 ORTHO05D003925 1.1e-14 84.0 171 36.8
FAN13G2779 Fragaria x ananassa HOM05D003417 ORTHO05D003925 2.0e-14 83.2 126 36.5
Ca_24409_v3 Cicer arietinum L. HOM05D003417 ORTHO05D003925 3.3e-14 82.4 160 35.6
FvH4_5g09901 Fragaria vesca HOM05D003417 ORTHO05D003925 3.3e-14 82.4 110 40.9
Thecc.02G189400 Theobroma cacao HOM05D003417 ORTHO05D003925 3.3e-14 82.4 163 36.2
Migut.K01128 Erythranthe guttata HOM05D003417 ORTHO05D003925 4.4e-14 82.0 117 43.6
Hma1.2p1_0738F.1_g210870 Hydrangea macrophylla HOM05D003417 ORTHO05D003925 4.4e-14 82.0 109 42.2
Gohir.A03G055500 Gossypium hirsutum HOM05D003417 ORTHO05D003925 5.7e-14 81.6 146 34.2
Actinidia22106 Actinidia chinensis HOM05D003417 ORTHO05D003925 9.7e-14 80.9 155 38.1
MELO3C022364.2 Cucumis melo HOM05D003417 ORTHO05D003925 9.7e-14 80.9 168 34.5
CsaV3_6G007690 Cucumis sativus L. HOM05D003417 ORTHO05D003925 9.7e-14 80.9 106 38.7
LjContig00408g0013061 Lotus japonicus HOM05D003417 ORTHO05D003925 1.3e-13 80.5 106 40.6
Glyma.01G236200 Glycine max HOM05D003417 ORTHO05D003925 1.7e-13 80.1 126 37.3
TPR.G37882 Trifolium pratense HOM05D003417 ORTHO05D003925 1.7e-13 80.1 105 43.8
VMungo1215G0885 Vigna mungo HOM05D003417 ORTHO05D003925 1.7e-13 80.1 143 39.2
BraA09t36989Z Brassica rapa HOM05D003417 ORTHO05D003925 2.8e-13 79.3 142 36.6
Medtr5g006540 Medicago truncatula HOM05D003417 ORTHO05D003925 2.8e-13 79.3 134 35.1
Sp2g01510 Schrenkiella parvula HOM05D003417 ORTHO05D003925 2.8e-13 79.3 142 37.3
Thhalv10023743m.g Eutrema salsugineum HOM05D003417 ORTHO05D003925 3.7e-13 79.0 143 38.5
Sc12g0010620 Simmondsia chinensis HOM05D003417 ORTHO05D003925 3.7e-13 79.0 101 41.6
Dinv04789 Davidia involucrata HOM05D003417 ORTHO05D003925 4.8e-13 78.6 160 33.1
Psat2g190600 Pisum sativum HOM05D003417 ORTHO05D003925 4.8e-13 78.6 166 35.5
TWI36G0671 Tripterygium wilfordii HOM05D003417 ORTHO05D003925 4.8e-13 78.6 104 40.4
BcaC04g22724 Brassica carinata HOM05D003417 ORTHO05D003925 6.3e-13 78.2 142 36.6
BcaC06g31933 Brassica carinata HOM05D003417 ORTHO05D003925 6.3e-13 78.2 142 35.9
C09p15920 Brassica napus HOM05D003417 ORTHO05D003925 6.3e-13 78.2 142 36.6
CARHR048550 Cardamine hirsuta HOM05D003417 ORTHO05D003925 6.3e-13 78.2 153 36.6
RcHm_v2.0_Chr7g0188371 Rosa chinensis HOM05D003417 ORTHO05D003925 6.3e-13 78.2 146 31.5
A09p13420 Brassica napus HOM05D003417 ORTHO05D003925 8.2e-13 77.8 140 36.4
THA.LOC104823574 Tarenaya hassleriana HOM05D003417 ORTHO05D003925 8.2e-13 77.8 152 39.5
arahy.Tifrunner.gnm1.ann1.0A1KUW Arachis hypogaea HOM05D003417 ORTHO05D003925 1.1e-12 77.4 159 34.6
BcaC04g22723 Brassica carinata HOM05D003417 ORTHO05D003925 1.1e-12 77.4 135 37.0
Carub.0002s0193 Capsella rubella HOM05D003417 ORTHO05D003925 1.4e-12 77.0 154 37.7
Gohir.D03G111100 Gossypium hirsutum HOM05D003417 ORTHO05D003925 1.4e-12 77.0 146 32.9
Gorai.003G117600 Gossypium raimondii HOM05D003417 ORTHO05D003925 1.4e-12 77.0 146 32.9
ClCG06G001670 Citrullus lanatus HOM05D003417 ORTHO05D003925 1.8e-12 76.6 151 35.1
ClCG06G001680 Citrullus lanatus HOM05D003417 ORTHO05D003925 1.8e-12 76.6 151 35.1
Nitab4.5_0000976g0210 Nicotiana tabacum HOM05D003417 ORTHO05D003925 1.8e-12 76.6 121 38.0
Sopen03g036950 Solanum pennellii HOM05D003417 ORTHO05D003925 2.4e-12 76.3 153 34.0
Manes.06G128100 Manihot esculenta HOM05D003417 ORTHO05D003925 3.1e-12 75.9 110 34.5
arahy.Tifrunner.gnm1.ann1.EYAH79 Arachis hypogaea HOM05D003417 ORTHO05D003925 4.1e-12 75.5 158 34.8
Duzib205G0326 Durio zibethinus HOM05D003417 ORTHO05D003925 4.1e-12 75.5 147 29.3
FAN04G2197 Fragaria x ananassa HOM05D000001 ORTHO05D010118 4.1e-12 75.5 143 32.2
PSO017G5943 Papaver somniferum HOM05D003417 ORTHO05D003925 4.1e-12 75.5 113 36.3
Solyc03g118050.3 Solanum lycopersicum HOM05D003417 ORTHO05D003925 4.1e-12 75.5 151 33.8
PGSC0003DMG400014233 Solanum tuberosum HOM05D003417 ORTHO05D003925 4.1e-12 75.5 153 33.3
GSVIVG01008665001 Vitis vinifera HOM05D003417 ORTHO05D003925 4.1e-12 75.5 129 33.3
AL2G12520 Arabidopsis lyrata HOM05D003417 ORTHO05D003925 5.3e-12 75.1 151 35.1
Ciclev10006808m.g Citrus clementina HOM05D003417 ORTHO05D003925 5.3e-12 75.1 116 36.2
Atru.chr12.1453 Acer truncatum HOM05D003417 ORTHO05D003925 9.1e-12 74.3 146 36.3
AT1G63060 Arabidopsis thaliana HOM05D003417 ORTHO05D003925 9.1e-12 74.3 142 35.2
MSTRG.440 Avicennia marina HOM05D003417 ORTHO05D003925 9.1e-12 74.3 161 37.3
COL.COLO4_37277 Corchorus olitorius HOM05D003417 ORTHO05D003925 9.1e-12 74.3 112 33.9
PSO017G5382 Papaver somniferum HOM05D003417 ORTHO05D003925 9.1e-12 74.3 125 37.6
PSO478G0254 Papaver somniferum HOM05D003417 ORTHO05D003925 9.1e-12 74.3 125 37.6
Sc11g0000040 Simmondsia chinensis HOM05D003417 ORTHO05D003925 9.1e-12 74.3 74 50.0
DCAR_025634 Daucus carota HOM05D003417 ORTHO05D003925 1.2e-11 73.9 169 30.2
Cc09_g02790 Coffea canephora HOM05D003417 ORTHO05D003925 1.6e-11 73.6 161 36.6
Lalb_Chr05g0211061 Lupinus albus HOM05D003417 ORTHO05D003925 1.6e-11 73.6 106 37.7
vmacro16765 Vaccinium macrocarpon HOM05D003417 ORTHO05D003925 2.0e-11 73.2 110 38.2
vmacro16773 Vaccinium macrocarpon HOM05D003417 ORTHO05D003925 2.0e-11 73.2 110 38.2
MD16G1143400 Malus domestica HOM05D003417 ORTHO05D003925 2.6e-11 72.8 120 37.5
Rhsim12G0015800 Rhododendron simsii HOM05D003417 ORTHO05D003925 2.6e-11 72.8 77 46.8
SalBow6G0662 Salvia bowleyana HOM05D003417 ORTHO05D003925 3.5e-11 72.4 130 36.9
Eucgr.G01269 Eucalyptus grandis HOM05D003417 ORTHO05D003925 4.5e-11 72.0 163 33.1
MD14G1144900 Malus domestica HOM05D003417 ORTHO05D003925 4.5e-11 72.0 127 33.1
Aqoxy5G01345 Aquilegia oxysepala HOM05D003417 ORTHO05D003925 5.9e-11 71.6 169 29.6
CARHR205820 Cardamine hirsuta HOM05D003417 ORTHO05D003925 5.9e-11 71.6 156 30.1
AUR62036971 Chenopodium quinoa HOM05D003417 ORTHO05D003925 5.9e-11 71.6 111 36.0
Nitab4.5_0010036g0010 Nicotiana tabacum HOM05D003417 ORTHO05D003925 7.7e-11 71.2 141 36.2
GSVIVG01001116001 Vitis vinifera HOM05D003417 ORTHO05D003925 7.7e-11 71.2 161 31.7
MD00G1076100 Malus domestica HOM05D003417 ORTHO05D003925 1.0e-10 70.9 109 33.9
Potri.015G109100 Populus trichocarpa HOM05D003417 ORTHO05D003925 1.0e-10 70.9 114 35.1
SalBow6G6928 Salvia bowleyana HOM05D003417 ORTHO05D003925 1.3e-10 70.5 129 36.4
EL10Ac5g11265 Beta vulgaris HOM05D003417 ORTHO05D003925 1.7e-10 70.1 124 35.5
Haze_07083 Corylus avellana HOM05D003417 ORTHO05D003925 2.2e-10 69.7 111 37.8
PGR142G4203 Punica granatum HOM05D003417 ORTHO05D003925 2.2e-10 69.7 142 37.3
Aa31LG2G550 Aethionema arabicum HOM05D003417 ORTHO05D003925 2.9e-10 69.3 122 36.9
AT5G07330 Arabidopsis thaliana HOM05D003417 ORTHO05D003925 3.8e-10 68.9 159 29.6
Sed0011159 Sechium edule HOM05D003417 ORTHO05D003925 3.8e-10 68.9 144 31.2
Potri.012G111000 Populus trichocarpa HOM05D003417 ORTHO05D003925 5.0e-10 68.6 113 34.5
CAN.G1008.44 Capsicum annuum HOM05D003417 ORTHO05D003925 6.5e-10 68.2 127 32.3
Cpa.g.sc13.191 Carica papaya HOM05D003417 ORTHO05D003925 6.5e-10 68.2 110 32.7
Prupe.1G212400 Prunus persica HOM05D003417 ORTHO05D003925 6.5e-10 68.2 119 33.6
Gohir.D02G176350 Gossypium hirsutum HOM05D003417 ORTHO05D003925 8.5e-10 67.8 113 35.4
PGR142G3056 Punica granatum HOM05D003417 ORTHO05D003925 8.5e-10 67.8 108 36.1
PGR142G0654 Punica granatum HOM05D003417 ORTHO05D003925 1.1e-09 67.4 161 32.3
Sc12g0010610 Simmondsia chinensis HOM05D003417 ORTHO05D003925 1.1e-09 67.4 80 40.0
TAR622G1221 Trochodendron aralioides HOM05D003417 ORTHO05D003925 1.5e-09 67.0 158 33.5
unitig_26.g10436 Utricularia gibba HOM05D003417 ORTHO05D003925 1.5e-09 67.0 98 42.9
Nitab4.5_0001153g0130 Nicotiana tabacum HOM05D003417 ORTHO05D003925 1.9e-09 66.6 105 37.1
Os11g0533400 Oryza sativa ssp. japonica HOM05D003417 ORTHO05D003925 1.9e-09 66.6 111 30.6
EL10Ac5g11264 Beta vulgaris HOM05D003417 ORTHO05D003925 2.5e-09 66.2 115 36.5
PGSC0003DMG400019112 Solanum tuberosum HOM05D003417 ORTHO05D003925 2.5e-09 66.2 150 34.7
Ah.02g114510 Amaranthus hybridus HOM05D003417 ORTHO05D003925 3.2e-09 65.9 161 32.3
CSS0017660 Camellia sinensis var. sinensis HOM05D003417 ORTHO05D003925 3.2e-09 65.9 77 37.7
CANSAT56G3475 Cannabis sativa HOM05D003417 ORTHO05D003925 3.2e-09 65.9 74 37.8
CAN.G305.6 Capsicum annuum HOM05D003417 ORTHO05D003925 3.2e-09 65.9 102 41.2
AUR62019228 Chenopodium quinoa HOM05D003417 ORTHO05D003925 3.2e-09 65.9 103 38.8
PSO478G4422 Papaver somniferum HOM05D003417 ORTHO05D003925 3.2e-09 65.9 79 40.5
Peaxi162Scf00423g00126 Petunia axillaris HOM05D003417 ORTHO05D003925 3.2e-09 65.9 131 32.1
Prupe.5G139500 Prunus persica HOM05D003417 ORTHO05D003925 3.2e-09 65.9 113 32.7
Solyc05g053555.1 Solanum lycopersicum HOM05D003417 ORTHO05D003925 3.2e-09 65.9 152 33.6
Lj6P839T31 Lonicera japonica HOM05D003417 ORTHO05D003925 4.2e-09 65.5 63 50.8
Sopen05g032080 Solanum pennellii HOM05D003417 ORTHO05D003925 4.2e-09 65.5 150 34.0
TWI23G0415 Tripterygium wilfordii HOM05D003417 ORTHO05D003925 4.2e-09 65.5 132 31.1
Hund10020 Selenicereus undatus HOM05D003417 ORTHO05D003925 5.5e-09 65.1 115 31.3
Lalb_Chr07g0183911 Lupinus albus HOM05D003417 ORTHO05D003925 7.2e-09 64.7 109 36.7
Oeu051179.2 Olea europaea HOM05D003417 ORTHO05D003925 7.2e-09 64.7 125 34.4
SGA_v2.0_scaffold37G14660 Striga asiatica HOM05D000001 ORTHO05D010118 7.2e-09 64.7 146 32.9
TAR371G0461 Trochodendron aralioides HOM05D003417 ORTHO05D003925 7.2e-09 64.7 107 32.7
AL6G17600 Arabidopsis lyrata HOM05D003417 ORTHO05D003925 9.4e-09 64.3 159 28.3
Carub.0006s0630 Capsella rubella HOM05D003417 ORTHO05D003925 9.4e-09 64.3 159 27.0
Ciclev10032920m.g Citrus clementina HOM05D003417 ORTHO05D003925 9.4e-09 64.3 147 29.3
CsaV3_3G017500 Cucumis sativus L. HOM05D003417 ORTHO05D003925 9.4e-09 64.3 117 33.3
SHI04108 Sapria himalayana HOM05D000154 ORTHO05D000092 9.4e-09 64.3 94 38.3
Solyc03g118060.3 Solanum lycopersicum HOM05D003417 ORTHO05D003925 9.4e-09 64.3 106 34.0
Ca_16817_v3 Cicer arietinum L. HOM05D003417 ORTHO05D003925 1.2e-08 63.9 112 33.0
Lj4g0015426 Lotus japonicus HOM05D003417 ORTHO05D003925 1.2e-08 63.9 114 34.2
MBI07_g07554_MAGBIO Magnolia biondii HOM05D003417 ORTHO05D003925 1.6e-08 63.5 108 36.1
PGSC0003DMG400014234 Solanum tuberosum HOM05D003417 ORTHO05D003925 1.6e-08 63.5 143 30.1
Zm00001eb113490 Zea mays HOM05D003417 ORTHO05D003925 1.6e-08 63.5 134 29.9
AUR62000056 Chenopodium quinoa HOM05D003417 ORTHO05D003925 2.1e-08 63.2 137 32.8
Lsat_1_v5_gn_4_85481 Lactuca sativa HOM05D003417 ORTHO05D003925 2.7e-08 62.8 160 33.8
Aa31LG3G19040 Aethionema arabicum HOM05D003417 ORTHO05D003925 4.7e-08 62.0 110 32.7
Aqoxy5G03016 Aquilegia oxysepala HOM05D003417 ORTHO05D003925 4.7e-08 62.0 157 27.4
CSS0030975 Camellia sinensis var. sinensis HOM05D003417 ORTHO05D003925 4.7e-08 62.0 108 32.4
DCAR_019915 Daucus carota HOM05D003417 ORTHO05D003925 4.7e-08 62.0 106 33.0
Eucgr.G02781 Eucalyptus grandis HOM05D003417 ORTHO05D003925 4.7e-08 62.0 103 35.9
Manes.14G043500 Manihot esculenta HOM05D003417 ORTHO05D003925 4.7e-08 62.0 133 30.1
MELO3C006933.2 Cucumis melo HOM05D003417 ORTHO05D003925 6.1e-08 61.6 117 31.6
Dinv13701 Davidia involucrata HOM05D003417 ORTHO05D003925 6.1e-08 61.6 107 35.5
ECA232G4830 Erigeron canadensis HOM05D003417 ORTHO05D003925 6.1e-08 61.6 104 38.5
Peaxi162Scf00314g00746 Petunia axillaris HOM05D003417 ORTHO05D003925 6.1e-08 61.6 136 36.0
Sp6g35550 Schrenkiella parvula HOM05D003417 ORTHO05D003925 6.1e-08 61.6 150 30.0
Sopen03g036960 Solanum pennellii HOM05D003417 ORTHO05D003925 6.1e-08 61.6 131 31.3
BcaC06g32447 Brassica carinata HOM05D003417 ORTHO05D003925 8.0e-08 61.2 146 26.7
Nn8g40516 Nelumbo nucifera HOM05D003417 ORTHO05D003925 8.0e-08 61.2 107 33.6
HPP92_009802 Vanilla planifolia HOM05D003417 ORTHO05D003925 8.0e-08 61.2 88 34.1
Actinidia36848 Actinidia chinensis HOM05D003417 ORTHO05D003925 1.0e-07 60.8 105 36.2
AUR62032202 Chenopodium quinoa HOM05D003417 ORTHO05D003925 1.0e-07 60.8 84 34.5
Cc04_g05680 Coffea canephora HOM05D003417 ORTHO05D003925 1.0e-07 60.8 139 32.4
SHI04103 Sapria himalayana HOM05D003417 ORTHO05D003925 2.3e-07 59.7 113 31.9
Aqoxy5G03015 Aquilegia oxysepala HOM05D003417 ORTHO05D003925 4.0e-07 58.9 127 31.5
Gorai.005G198000 Gossypium raimondii HOM05D003417 ORTHO05D003925 4.0e-07 58.9 59 47.5
Cc00_g07820 Coffea canephora HOM05D003417 ORTHO05D003925 5.2e-07 58.5 146 31.5
HanXRQChr16g0499151 Helianthus annuus HOM05D003417 ORTHO05D003925 5.2e-07 58.5 160 30.6
THA.LOC104801745 Tarenaya hassleriana HOM05D003417 ORTHO05D003925 5.2e-07 58.5 152 27.6
Migut.I00656 Erythranthe guttata HOM05D003417 ORTHO05D003925 6.7e-07 58.2 169 29.6
Eucgr.J01143 Eucalyptus grandis HOM05D003417 ORTHO05D003925 6.7e-07 58.2 126 31.0
Lj5A85T112 Lonicera japonica HOM05D003417 ORTHO05D003925 6.7e-07 58.2 76 39.5
VMungo0251G0234 Vigna mungo HOM05D000001 ORTHO05D010118 6.7e-07 58.2 118 32.2
CDE06G2784 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 1.2e-06 57.4 79 35.4
HanXRQChr16g0499291 Helianthus annuus HOM05D003417 ORTHO05D003925 1.2e-06 57.4 109 33.9
Nitab4.5_0000976g0150 Nicotiana tabacum HOM05D003417 ORTHO05D003925 1.2e-06 57.4 81 43.2
HPP92_008239 Vanilla planifolia HOM05D003417 ORTHO05D003925 1.5e-06 57.0 76 35.5
CDE06G0345 Ceratophyllum demersum HOM05D003417 ORTHO05D003925 2.0e-06 56.6 125 30.4
Glyma.05G199300 Glycine max HOM05D003417 ORTHO05D003925 2.6e-06 56.2 110 30.9
unitig_8.g3050 Utricularia gibba HOM05D003417 ORTHO05D003925 4.4e-06 55.5 93 38.7
Phvul.002G280400 Phaseolus vulgaris HOM05D003417 ORTHO05D003925 5.7e-06 55.1 111 33.3
SGA_v2.0_scaffold74G24631 Striga asiatica HOM05D000177 ORTHO05D002987 9.7e-06 54.3 92 32.6


User provided reference genes

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