Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G4055 Erigeron canadensis HOM05D009669 ORTHO05D000181 8.0e-61 236.9 117 100.0
HanXRQChr16g0524091 Helianthus annuus HOM05D009669 ORTHO05D000181 1.3e-31 139.8 116 55.2
Lsat_1_v5_gn_4_33221 Lactuca sativa HOM05D009669 ORTHO05D000181 5.8e-27 124.4 114 55.3
HanXRQChr17g0562751 Helianthus annuus HOM05D009669 ORTHO05D000181 1.7e-26 122.9 87 59.8
Lsat_1_v5_gn_4_33160 Lactuca sativa HOM05D009669 ORTHO05D000181 1.3e-23 113.2 123 50.4
Dinv32580 Davidia involucrata HOM05D009669 ORTHO05D000181 1.2e-21 106.7 107 51.4
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.6e-21 106.3 91 52.7
Migut.B01858 Erythranthe guttata HOM05D000275 ORTHO05D000181 1.2e-19 100.1 109 43.1
SalBow3G1637 Salvia bowleyana HOM05D009669 ORTHO05D000181 9.8e-19 97.1 105 45.7
CsaV3_3G008100 Cucumis sativus L. HOM05D000275 ORTHO05D000181 1.4e-17 93.2 106 47.2
ClCG05G000860 Citrullus lanatus HOM05D000275 ORTHO05D000181 2.4e-17 92.4 113 47.8
GSVIVG01027088001 Vitis vinifera HOM05D009669 ORTHO05D000181 1.2e-16 90.1 115 43.5
Actinidia10131 Actinidia chinensis HOM05D000275 ORTHO05D000181 3.5e-16 88.6 97 45.4
Hma1.2p1_0295F.1_g116650 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 3.5e-16 88.6 109 39.4
Hma1.2p1_0295F.1_g116640 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 7.8e-16 87.4 117 41.0
PGR042G1181 Punica granatum HOM05D000275 ORTHO05D000181 1.7e-15 86.3 95 42.1
EL10Ac1g00279 Beta vulgaris HOM05D000275 ORTHO05D000181 2.3e-15 85.9 90 45.6
Actinidia08273 Actinidia chinensis HOM05D000275 ORTHO05D000181 3.0e-15 85.5 108 45.4
Sed0025062 Sechium edule HOM05D000275 ORTHO05D000181 3.0e-15 85.5 96 47.9
Thecc.01G343500 Theobroma cacao HOM05D000275 ORTHO05D000181 3.0e-15 85.5 92 44.6
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 6.6e-15 84.3 89 46.1
Prupe.2G187100 Prunus persica HOM05D000275 ORTHO05D000181 1.1e-14 83.6 95 42.1
Potri.014G098000 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.5e-14 83.2 88 44.3
Cpa.g.sc96.4 Carica papaya HOM05D002290 ORTHO05D002532 1.9e-14 82.8 107 43.9
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.9e-14 82.8 90 46.7
Gohir.D08G044700 Gossypium hirsutum HOM05D000275 ORTHO05D000181 5.6e-14 81.3 109 40.4
Sabra14G0071800 Salix brachista HOM05D009669 ORTHO05D000181 5.6e-14 81.3 88 45.5
MSTRG.4810 Avicennia marina HOM05D009669 ORTHO05D000181 1.2e-13 80.1 109 41.3
Lalb_Chr15g0076251 Lupinus albus HOM05D000275 ORTHO05D000181 1.6e-13 79.7 119 42.9
Peaxi162Scf00786g00431 Petunia axillaris HOM05D000275 ORTHO05D000181 1.6e-13 79.7 120 36.7
Gorai.004G043700 Gossypium raimondii HOM05D000275 ORTHO05D000181 2.1e-13 79.3 109 39.4
Nitab4.5_0000838g0170 Nicotiana tabacum HOM05D009669 ORTHO05D000181 2.1e-13 79.3 93 44.1
FAN03G3319 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.6e-13 78.6 93 40.9
Glyma.03G257200 Glycine max HOM05D000275 ORTHO05D000181 3.6e-13 78.6 110 40.0
FvH4_7g16320 Fragaria vesca HOM05D000275 ORTHO05D000181 1.1e-12 77.0 110 37.3
FAN06G2922 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.1e-12 77.0 110 37.3
FAN06G3596 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.1e-12 77.0 110 37.3
MD01G1079700 Malus domestica HOM05D000275 ORTHO05D000181 1.1e-12 77.0 95 41.1
CiPaw.02G040200 Carya illinoinensis HOM05D000275 ORTHO05D000181 1.4e-12 76.6 90 46.7
Duzib268G0438 Durio zibethinus HOM05D000275 ORTHO05D000181 1.4e-12 76.6 109 38.5
FAN01G1361 Fragaria x ananassa HOM05D009669 ORTHO05D000181 1.4e-12 76.6 93 40.9
Gohir.A08G034200 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.4e-12 76.6 109 39.4
MD07G1148600 Malus domestica HOM05D000275 ORTHO05D000181 1.4e-12 76.6 112 39.3
Nitab4.5_0004999g0110 Nicotiana tabacum HOM05D009669 ORTHO05D000181 1.4e-12 76.6 94 41.5
CAN.G986.13 Capsicum annuum HOM05D000275 ORTHO05D000181 1.8e-12 76.3 113 38.1
Nitab4.5_0000838g0110 Nicotiana tabacum HOM05D009669 ORTHO05D000181 1.8e-12 76.3 106 37.7
Gohir.A08G034300 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.3e-12 75.9 92 39.1
Gorai.004G043800 Gossypium raimondii HOM05D000275 ORTHO05D000181 2.3e-12 75.9 92 41.3
FAN10G1205 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.1e-12 75.5 93 39.8
FAN10G2621 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.1e-12 75.5 93 39.8
TAR374G1222 Trochodendron aralioides HOM05D000275 ORTHO05D000181 4.0e-12 75.1 92 43.5
Phvul.006G112211 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 5.2e-12 74.7 111 38.7
Gohir.D08G044800 Gossypium hirsutum HOM05D000275 ORTHO05D000181 8.9e-12 73.9 92 40.2
Peaxi162Scf00786g00433 Petunia axillaris HOM05D009669 ORTHO05D000181 8.9e-12 73.9 93 38.7
Lalb_Chr21g0316631 Lupinus albus HOM05D000275 ORTHO05D000181 1.2e-11 73.6 116 36.2
Nitab4.5_0012336g0010 Nicotiana tabacum HOM05D009669 ORTHO05D000181 1.2e-11 73.6 116 33.6
AUR62023470 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.5e-11 73.2 109 38.5
RcHm_v2.0_Chr1g0359331 Rosa chinensis HOM05D000275 ORTHO05D000181 1.5e-11 73.2 108 37.0
Manes.01G246800 Manihot esculenta HOM05D000275 ORTHO05D000181 2.0e-11 72.8 89 39.3
Eucgr.E00056 Eucalyptus grandis HOM05D009669 ORTHO05D000181 4.4e-11 71.6 91 39.6
Atru.chr9.1983 Acer truncatum HOM05D000275 ORTHO05D000181 9.9e-11 70.5 94 40.4
Atru.chr9.1997 Acer truncatum HOM05D000275 ORTHO05D000181 9.9e-11 70.5 94 40.4
CAN.G986.14 Capsicum annuum HOM05D000275 ORTHO05D000181 9.9e-11 70.5 91 42.9
VMungo0540G1752 Vigna mungo HOM05D000275 ORTHO05D000181 2.2e-10 69.3 90 40.0
Prupe.5G118600 Prunus persica HOM05D000275 ORTHO05D000181 3.7e-10 68.6 105 38.1
Sopen01g039530 Solanum pennellii HOM05D009669 ORTHO05D000181 4.9e-10 68.2 92 35.9
Actinidia22157 Actinidia chinensis HOM05D000275 ORTHO05D000181 6.4e-10 67.8 96 39.6
AUR62004483 Chenopodium quinoa HOM05D000275 ORTHO05D000181 6.4e-10 67.8 108 37.0
Gohir.A07G138100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 6.4e-10 67.8 101 42.6
Gohir.D07G143100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 6.4e-10 67.8 101 42.6
Gorai.001G155200 Gossypium raimondii HOM05D000275 ORTHO05D000181 6.4e-10 67.8 101 42.6
Solyc01g095780.2 Solanum lycopersicum HOM05D009669 ORTHO05D000181 8.3e-10 67.4 90 35.6
Atru.chr5.658 Acer truncatum HOM05D000275 ORTHO05D000181 1.1e-09 67.0 118 33.9
PGSC0003DMG400000218 Solanum tuberosum HOM05D009669 ORTHO05D000181 1.4e-09 66.6 114 30.7
Peaxi162Scf00786g00445 Petunia axillaris HOM05D009669 ORTHO05D000181 1.9e-09 66.2 108 35.2
TWI59G0931 Tripterygium wilfordii HOM05D000275 ORTHO05D000181 1.9e-09 66.2 113 34.5
Sc01g0002760 Simmondsia chinensis HOM05D000275 ORTHO05D000181 4.1e-09 65.1 111 35.1
Ciclev10022783m.g Citrus clementina HOM05D009669 ORTHO05D000181 5.4e-09 64.7 89 38.2
Nn1g09584 Nelumbo nucifera HOM05D000275 ORTHO05D000181 5.4e-09 64.7 110 35.5
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 9.2e-09 63.9 90 37.8
Ciclev10022824m.g Citrus clementina HOM05D000275 ORTHO05D000181 1.2e-08 63.5 90 33.3
Manes.02G010200 Manihot esculenta HOM05D000275 ORTHO05D000181 1.2e-08 63.5 93 34.4
Psat3g120240 Pisum sativum HOM05D000275 ORTHO05D000181 4.6e-08 61.6 110 33.6
Actinidia36015 Actinidia chinensis HOM05D000275 ORTHO05D000181 7.8e-08 60.8 111 37.8
Psat0s6176g0040 Pisum sativum HOM05D000275 ORTHO05D000181 7.8e-08 60.8 110 33.6
MD06G1106400 Malus domestica HOM05D000275 ORTHO05D000181 2.3e-07 59.3 70 42.9
AUR62013852 Chenopodium quinoa HOM05D000275 ORTHO05D000181 3.9e-07 58.5 88 36.4
Nitab4.5_0000838g0180 Nicotiana tabacum HOM05D009669 ORTHO05D000181 6.6e-07 57.8 82 35.4
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 8.6e-07 57.4 90 34.4
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 1.1e-06 57.0 90 33.3
Glyma.09G055000 Glycine max HOM05D000275 ORTHO05D000181 1.1e-06 57.0 88 34.1
CiPaw.09G220700 Carya illinoinensis HOM05D000275 ORTHO05D000181 1.9e-06 56.2 80 38.8
AUR62006385 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.9e-06 56.2 92 35.9
AUR62029724 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.9e-06 56.2 92 37.0
Ah.08g209530 Amaranthus hybridus HOM05D000275 ORTHO05D000181 2.5e-06 55.8 77 41.6
CiPaw.04G157500 Carya illinoinensis HOM05D000275 ORTHO05D000181 2.5e-06 55.8 80 38.8
Glyma.09G055100 Glycine max HOM05D000275 ORTHO05D000181 2.5e-06 55.8 88 34.1
CSS0038340 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 3.3e-06 55.5 111 30.6
Nitab4.5_0000851g0010 Nicotiana tabacum HOM05D000275 ORTHO05D000181 3.3e-06 55.5 87 36.8
Haze_25363 Corylus avellana HOM05D033107 ORTHO05D000181 4.3e-06 55.1 112 32.1
Lalb_Chr07g0188481 Lupinus albus HOM05D000275 ORTHO05D003378 5.6e-06 54.7 89 31.5
PSO210G3257 Papaver somniferum HOM05D000275 ORTHO05D000181 5.6e-06 54.7 90 31.1
DCAR_009799 Daucus carota HOM05D000275 ORTHO05D000181 9.5e-06 53.9 88 29.5
Lsat_1_v5_gn_4_33321 Lactuca sativa HOM05D008424 ORTHO05D010827 9.5e-06 53.9 82 36.6


User provided reference genes

Program Settings