Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.2e-262 909.4 496 100.0
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.7e-168 596.7 336 88.1
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 6.0e-150 535.0 316 82.0
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 2.3e-149 533.1 316 81.6
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 2.3e-149 533.1 326 79.4
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 7.3e-148 528.1 317 81.7
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.6e-147 526.9 316 81.0
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.1e-147 526.6 316 81.3
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 1.4e-146 523.9 309 84.1
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.8e-146 523.5 315 81.0
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 6.9e-146 521.5 316 80.4
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 2.2e-144 516.5 315 80.6
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 2.9e-144 516.2 304 83.2
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.4e-143 513.1 319 78.4
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 9.3e-143 511.1 320 78.8
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 1.2e-142 510.8 348 75.0
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 2.1e-142 510.0 317 78.9
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 2.1e-142 510.0 331 75.8
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 2.1e-142 510.0 316 78.8
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 3.5e-142 509.2 329 79.3
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 7.8e-142 508.1 320 79.4
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 3.0e-141 506.1 316 77.5
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 6.6e-141 505.0 314 78.7
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.1e-140 504.2 317 79.8
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 1.9e-140 503.4 308 79.5
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 2.5e-140 503.1 316 78.5
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 3.3e-140 502.7 309 78.6
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 7.3e-140 501.5 377 69.0
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 7.3e-140 501.5 309 78.6
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.6e-139 500.4 315 78.1
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 2.1e-139 500.0 309 79.0
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 2.8e-139 499.6 314 77.7
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.8e-139 499.6 330 76.1
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 4.8e-139 498.8 322 77.3
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 4.8e-139 498.8 317 77.6
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 4.8e-139 498.8 318 78.9
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 6.2e-139 498.4 317 77.9
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 8.1e-139 498.0 318 76.4
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.8e-138 496.9 304 79.3
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 5.3e-138 495.4 305 79.3
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 6.9e-138 495.0 310 78.1
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.2e-137 494.2 294 82.0
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 1.5e-137 493.8 324 75.0
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 2.0e-137 493.4 303 79.5
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 5.8e-137 491.9 320 75.6
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 9.9e-137 491.1 363 70.2
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 9.9e-137 491.1 363 70.2
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 1.7e-136 490.3 317 77.6
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 3.8e-136 489.2 333 73.9
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 3.8e-136 489.2 301 79.1
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 4.9e-136 488.8 302 80.1
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 6.4e-136 488.4 302 77.8
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 6.4e-136 488.4 347 71.8
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 8.4e-136 488.0 336 72.3
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.9e-135 486.9 305 79.0
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 4.2e-135 485.7 290 81.7
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 9.3e-135 484.6 312 76.3
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 1.6e-134 483.8 301 79.7
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 3.5e-134 482.6 311 75.9
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 4.6e-134 482.3 332 73.2
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 7.9e-134 481.5 320 75.3
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 7.9e-134 481.5 303 79.5
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.0e-133 481.1 332 72.9
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 1.8e-133 480.3 315 74.9
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 2.3e-133 479.9 319 76.5
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 3.9e-133 479.2 303 78.9
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 5.1e-133 478.8 321 74.1
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 5.1e-133 478.8 333 72.1
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 5.1e-133 478.8 287 80.5
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 8.7e-133 478.0 334 72.5
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.1e-132 477.6 316 73.7
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.1e-132 477.6 305 77.0
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 1.5e-132 477.2 305 78.0
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 4.8e-131 472.2 338 71.9
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 4.8e-131 472.2 305 76.4
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 2.4e-130 469.9 326 71.8
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 4.5e-129 465.7 333 71.2
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 2.4e-127 459.9 334 70.7
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 2.1e-126 456.8 367 66.5
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 1.5e-124 450.7 343 68.5
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 6.2e-123 445.3 332 69.6
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 1.4e-122 444.1 297 75.1
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 3.1e-122 443.0 283 78.1
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.3e-122 442.2 275 77.8
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 2.0e-121 440.3 344 67.2
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 4.9e-120 435.6 274 78.5
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 1.0e-117 427.9 269 79.9
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.1e-115 420.2 277 74.0
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 5.3e-106 389.0 322 61.5
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 9.1e-106 388.3 333 59.8
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.3e-104 384.4 268 73.9
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 3.2e-103 379.8 243 76.1
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 3.6e-102 376.3 265 72.5
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 7.9e-102 375.2 257 72.4
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.4e-98 364.4 299 58.5
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 9.1e-98 361.7 232 78.0
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.4e-97 359.8 319 57.7
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.2e-94 351.3 303 62.0
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 1.4e-93 347.8 205 82.4
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.0e-92 344.0 273 66.3
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 5.7e-92 342.4 200 82.5
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.7e-91 340.9 223 70.0
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.4e-90 337.0 260 67.3
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 1.0e-88 331.6 317 58.4
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 3.3e-84 316.6 307 56.4
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.7e-81 307.0 200 75.0
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 5.9e-81 305.8 358 48.9
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 5.0e-80 302.8 192 79.7
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 3.2e-71 273.5 218 62.8
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.4e-66 258.1 148 83.1
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.0e-61 241.9 285 47.7
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 1.2e-57 228.4 133 85.0
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 5.6e-55 219.5 180 64.4
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 2.8e-54 217.2 243 52.7
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.3e-51 208.4 120 81.7
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.6e-49 201.4 116 85.3
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 2.7e-49 200.7 336 39.0
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 3.0e-48 197.2 198 55.6
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 1.2e-46 191.8 147 63.9
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.0e-44 184.5 120 71.7
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 3.4e-44 183.7 126 74.6
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 3.4e-44 183.7 126 74.6
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 1.3e-43 181.8 134 66.4
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 4.1e-42 176.8 162 60.5
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 4.6e-41 173.3 122 72.1
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 2.0e-36 157.9 153 61.4
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 7.1e-34 149.4 86 83.7
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 3.5e-25 120.6 112 58.9
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.2e-19 101.3 113 49.6
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.7e-17 94.4 73 63.0
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 4.6e-17 93.6 55 78.2
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 1.8e-16 91.7 144 40.3
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 1.8e-16 91.7 69 65.2
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 1.9e-15 88.2 57 73.7
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 1.6e-14 85.1 81 53.1
Lsat_1_v5_gn_5_77500 Lactuca sativa HOM05D005534 ORTHO05D228775 2.1e-14 84.7 102 47.1
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 2.1e-14 84.7 110 47.3
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 9.0e-13 79.3 69 62.3
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 9.0e-13 79.3 57 70.2
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 4.2e-10 70.5 44 79.5
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 7.1e-10 69.7 140 34.3
TPR.G30727 Trifolium pratense HOM05D005534 ORTHO05D006642 7.9e-09 66.2 60 55.0
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 1.3e-08 65.5 35 82.9
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 3.9e-08 63.9 54 55.6


User provided reference genes

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