Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 2.8e-288 995.0 659 100.0
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 5.2e-149 532.3 673 55.3
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 4.1e-146 522.7 679 55.2
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 6.8e-133 478.8 662 52.6
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 3.4e-132 476.5 665 51.4
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 9.8e-132 474.9 670 50.0
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 1.9e-127 460.7 676 48.5
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 8.9e-125 451.8 681 47.4
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 3.2e-122 443.4 681 46.5
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 5.2e-117 426.0 672 46.1
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.0e-116 424.1 664 45.5
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 7.0e-114 415.6 668 44.5
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.5e-111 407.9 668 50.1
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 5.6e-111 406.0 571 56.0
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 3.6e-110 403.3 662 46.4
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 2.3e-109 400.6 665 46.5
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 6.8e-109 399.1 673 45.0
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 6.8e-109 399.1 571 55.2
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 8.9e-109 398.7 656 45.7
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 9.8e-108 395.2 695 43.9
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.9e-106 391.0 656 49.7
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.4e-106 390.6 668 50.6
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 7.1e-106 389.0 568 53.0
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 1.6e-105 387.9 660 44.7
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 7.8e-105 385.6 540 48.5
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.5e-103 380.6 671 49.5
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 4.3e-103 379.8 659 50.5
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 4.3e-103 379.8 674 48.1
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.6e-102 377.9 697 43.6
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 2.1e-102 377.5 670 45.4
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 3.6e-102 376.7 675 43.4
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 6.8e-101 372.5 670 40.9
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 6.8e-101 372.5 608 41.9
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 2.0e-100 370.9 676 43.3
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 1.7e-99 367.9 687 42.8
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 8.3e-99 365.5 679 42.6
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.1e-98 365.2 691 40.4
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 4.1e-98 363.2 674 43.2
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 5.4e-98 362.8 607 40.9
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.6e-97 361.3 676 40.2
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 2.1e-97 360.9 668 41.3
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.3e-96 358.2 701 39.2
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 2.3e-96 357.5 683 49.8
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 3.3e-95 353.6 635 44.1
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 4.3e-95 353.2 671 43.1
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 5.6e-95 352.8 703 41.0
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 6.2e-94 349.4 696 46.1
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.1e-93 348.6 695 42.6
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 1.8e-93 347.8 686 42.4
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 3.1e-93 347.1 682 39.7
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 6.8e-93 345.9 688 38.5
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 4.4e-92 343.2 696 43.8
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.3e-91 341.7 650 41.4
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.7e-91 341.3 684 40.4
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 8.4e-91 339.0 682 42.7
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 1.9e-90 337.8 685 42.8
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 2.4e-90 337.4 683 45.2
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 2.4e-90 337.4 689 45.1
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 4.2e-90 336.7 544 48.7
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 3.5e-89 333.6 695 42.0
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 7.8e-89 332.4 640 44.2
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 1.0e-88 332.0 587 48.9
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 6.6e-88 329.3 578 49.0
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 3.3e-87 327.0 693 43.9
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.3e-86 325.1 663 45.4
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 2.8e-86 323.9 641 43.2
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 8.1e-86 322.4 713 41.4
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.1e-85 322.0 595 49.1
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.8e-85 321.2 707 39.7
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.4e-85 320.9 699 44.1
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 2.4e-85 320.9 546 52.4
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 6.4e-83 312.8 679 43.0
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 6.4e-83 312.8 700 41.3
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 6.4e-83 312.8 697 41.5
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 2.4e-82 310.8 658 46.5
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 4.2e-82 310.1 578 45.8
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 1.7e-80 304.7 669 43.8
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.7e-80 304.7 662 42.0
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.0e-80 303.9 579 48.4
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 6.6e-80 302.8 705 44.7
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 3.6e-78 297.0 675 37.9
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 1.3e-75 288.5 600 44.2
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 2.9e-75 287.3 684 41.7
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 6.4e-75 286.2 681 40.7
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.4e-74 283.1 590 43.2
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 7.1e-74 282.7 665 41.2
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 2.7e-73 280.8 548 49.5
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 8.7e-72 275.8 674 42.9
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 2.4e-69 267.7 672 45.5
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 9.0e-69 265.8 653 47.5
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 3.4e-68 263.8 598 40.6
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 5.5e-66 256.5 356 45.8
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 2.3e-64 251.1 465 43.7
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 3.3e-63 247.3 746 38.1
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 1.8e-61 241.5 605 40.0
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 2.0e-60 238.0 581 41.5
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 7.6e-60 236.1 680 34.3
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 5.0e-59 233.4 696 33.0
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 8.7e-56 222.6 436 43.8
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.3e-55 220.3 453 41.3
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 6.3e-54 216.5 435 40.0
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.1e-53 215.7 437 39.1
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 9.0e-53 212.6 665 39.4
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 1.5e-52 211.8 668 38.8
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 2.6e-52 211.1 689 32.5
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.4e-52 210.7 689 31.6
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 4.5e-52 210.3 695 33.1
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 5.9e-52 209.9 684 39.3
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 1.3e-51 208.8 669 38.6
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 8.5e-51 206.1 645 39.1
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.7e-46 190.7 356 42.1
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 2.5e-42 177.9 367 45.0
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 1.6e-41 175.3 307 45.9
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 3.7e-38 164.1 201 47.3
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 5.9e-36 156.8 253 46.2
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.8e-32 145.2 195 55.9
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 4.8e-30 137.1 628 34.6
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 2.0e-28 131.7 581 33.9
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 1.5e-26 125.6 132 53.8
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 2.7e-25 121.3 174 43.7
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 3.7e-22 110.9 565 31.3
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 6.3e-22 110.2 301 35.5
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.0e-20 105.1 97 66.0
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 5.9e-20 103.6 97 66.0
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 7.7e-20 103.2 98 54.1
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 5.5e-18 97.1 625 25.3
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.6e-17 95.5 168 38.7
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 4.7e-17 94.0 606 31.0
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.1e-17 93.6 102 57.8
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.7e-14 85.5 615 25.9
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 3.7e-14 84.3 179 44.7
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 8.6e-11 73.2 563 25.8


User provided reference genes

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