Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 1.7e-282 975.3 488 100.0
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.9e-180 636.3 433 75.1
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 3.5e-171 605.5 435 71.7
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 2.9e-141 506.1 441 58.0
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.6e-134 483.8 454 54.4
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.1e-127 461.1 423 55.6
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.1e-127 461.1 423 55.6
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 2.7e-126 456.4 442 52.9
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 5.9e-126 455.3 452 52.4
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 5.6e-124 448.7 420 54.3
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.2e-123 447.6 443 51.7
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 1.0e-122 444.5 443 50.3
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 3.0e-122 443.0 456 48.7
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 8.9e-122 441.4 457 49.2
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 1.2e-121 441.0 457 49.5
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 3.2e-119 433.0 447 48.8
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 3.2e-119 433.0 433 53.6
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 2.5e-116 423.3 451 48.1
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 1.4e-114 417.5 416 50.2
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.8e-114 417.2 421 49.4
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 4.0e-114 416.0 434 49.8
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 5.2e-114 415.6 444 49.1
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 4.4e-113 412.5 435 49.0
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.7e-112 410.6 437 49.9
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 5.4e-111 405.6 421 48.5
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 1.6e-110 404.1 435 48.3
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 4.6e-110 402.5 435 47.6
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 1.7e-109 400.6 426 48.8
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 2.3e-109 400.2 420 49.3
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 3.9e-109 399.4 422 48.1
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 3.9e-109 399.4 445 47.4
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.5e-108 397.5 444 48.4
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 9.5e-108 394.8 306 68.0
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 9.5e-108 394.8 425 48.7
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 3.6e-107 392.9 432 46.3
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 6.2e-107 392.1 443 47.4
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 8.1e-107 391.7 430 47.9
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 4.0e-106 389.4 475 44.2
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 6.8e-106 388.7 420 47.1
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 6.8e-106 388.7 420 47.1
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 8.9e-106 388.3 421 47.0
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 8.9e-106 388.3 458 45.6
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 8.9e-106 388.3 458 45.6
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 1.5e-105 387.5 426 48.4
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 1.5e-105 387.5 423 47.0
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 2.6e-105 386.7 420 47.4
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 3.4e-105 386.3 420 47.6
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 3.4e-105 386.3 432 46.5
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.4e-105 386.3 432 46.5
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 4.4e-105 386.0 437 47.6
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 7.5e-105 385.2 421 47.5
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 1.7e-104 384.0 421 47.3
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 3.7e-104 382.9 425 47.1
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 3.7e-104 382.9 440 47.5
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.9e-104 382.5 419 47.7
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 6.4e-104 382.1 422 48.8
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 4.1e-103 379.4 422 46.9
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.1e-103 379.4 419 47.5
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 2.7e-102 376.7 438 45.4
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 5.1e-101 372.5 462 43.5
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 1.6e-99 367.5 426 46.2
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 3.6e-99 366.3 424 43.4
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 1.5e-97 360.9 419 46.1
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 1.5e-97 360.9 436 45.6
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 3.4e-97 359.8 419 45.8
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 3.4e-97 359.8 420 46.0
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.9e-95 354.0 415 44.6
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 2.7e-94 350.1 447 45.2
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 3.5e-94 349.7 436 44.7
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 1.7e-93 347.4 431 43.9
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 8.1e-91 338.6 418 43.1
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 2.6e-89 333.6 431 43.2
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.2e-87 326.2 355 45.9
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 3.5e-86 323.2 425 40.7
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 1.3e-85 321.2 442 43.9
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 1.3e-85 321.2 430 44.0
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 3.0e-85 320.1 432 43.5
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 3.0e-85 320.1 424 40.6
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 5.1e-85 319.3 439 40.3
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 5.1e-85 319.3 424 40.6
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 8.7e-85 318.5 424 40.6
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.9e-84 317.4 415 40.5
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 2.1e-83 313.9 441 39.7
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 2.8e-83 313.5 425 39.8
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 4.8e-83 312.8 421 39.4
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 4.0e-82 309.7 355 46.2
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 1.2e-81 308.1 354 45.5
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 5.4e-79 299.3 425 40.7
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 1.8e-77 294.3 324 48.5
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.6e-75 287.7 473 36.4
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.3e-69 267.3 457 35.9
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 5.1e-69 266.2 481 33.9
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 3.5e-62 243.4 430 35.6
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 9.6e-60 235.3 215 52.1
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 2.1e-59 234.2 245 48.2
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 1.5e-57 228.0 287 41.1
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.3e-56 224.9 217 51.2
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 2.8e-51 207.2 419 32.2
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 6.5e-48 196.1 425 31.5
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.2e-47 193.7 185 51.9
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.6e-38 163.7 177 42.9
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.5e-28 131.7 170 40.6
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 2.6e-28 131.0 420 26.2
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 2.9e-24 117.5 420 24.5
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.9e-24 117.5 137 41.6
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.2e-23 114.0 171 38.0
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 5.5e-23 113.2 199 36.2
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 5.7e-20 103.2 179 35.8
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 2.2e-19 101.3 139 39.6
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 7.0e-18 96.3 124 41.1
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 7.0e-18 96.3 124 41.1
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 1.7e-16 91.7 112 42.0
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 8.6e-16 89.4 126 41.3
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.9e-15 88.2 138 38.4
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 1.6e-14 85.1 218 27.5
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 3.0e-13 80.9 113 38.9
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.2e-12 79.0 87 47.1
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 1.7e-11 75.1 137 30.7
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 6.3e-11 73.2 103 36.9
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 9.2e-10 69.3 102 37.3
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.0e-09 68.2 114 32.5
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.0e-09 68.2 114 32.5
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 3.5e-09 67.4 91 40.7
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 4.5e-09 67.0 254 24.8
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 2.3e-08 64.7 108 30.6
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 2.9e-08 64.3 113 32.7
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 2.9e-08 64.3 237 22.4
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 1.5e-07 62.0 97 32.0
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 2.5e-07 61.2 91 35.2
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 3.3e-07 60.8 104 32.7
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 3.3e-07 60.8 91 36.3
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 3.3e-07 60.8 97 32.0
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 4.3e-07 60.5 130 30.0
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 4.3e-07 60.5 97 33.0
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 5.6e-07 60.1 91 34.1
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 7.3e-07 59.7 101 31.7
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 7.3e-07 59.7 97 33.0
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 7.3e-07 59.7 93 33.3
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 7.3e-07 59.7 137 32.1
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 7.3e-07 59.7 97 33.0
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 7.3e-07 59.7 93 36.6
TAR362G1073 Trochodendron aralioides HOM05D004127 ORTHO05D005119 7.3e-07 59.7 93 33.3
PSO170G0800 Papaver somniferum HOM05D004127 ORTHO05D005119 9.5e-07 59.3 93 33.3
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 1.2e-06 58.9 97 30.9
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.2e-06 58.9 97 30.9
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.2e-06 58.9 97 30.9
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.2e-06 58.9 91 36.3
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 1.2e-06 58.9 93 31.2
HPP92_004920 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.2e-06 58.9 60 48.3
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.6e-06 58.5 97 30.9
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.6e-06 58.5 93 32.3
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 1.6e-06 58.5 93 32.3
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 1.6e-06 58.5 97 33.0
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.1e-06 58.2 93 32.3
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 2.1e-06 58.2 94 31.9
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 2.8e-06 57.8 93 31.2
Medtr7g017525 Medicago truncatula HOM05D004127 ORTHO05D005119 2.8e-06 57.8 91 34.1
Medtr7g017530 Medicago truncatula HOM05D004127 ORTHO05D005119 2.8e-06 57.8 91 34.1
PSO357G0209 Papaver somniferum HOM05D004127 ORTHO05D005119 2.8e-06 57.8 93 32.3
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 3.6e-06 57.4 93 33.3
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 3.6e-06 57.4 97 29.9
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 4.7e-06 57.0 93 36.6
ECA247G3842 Erigeron canadensis HOM05D004127 ORTHO05D005119 4.7e-06 57.0 101 30.7
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 4.7e-06 57.0 97 30.9
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 4.7e-06 57.0 93 32.3
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 6.1e-06 56.6 93 31.2
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 8.0e-06 56.2 93 31.2


User provided reference genes

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