Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.6e-166 588.6 285 100.0
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 8.7e-61 238.0 288 47.9
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.9e-56 223.0 277 45.5
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 9.6e-52 208.0 272 43.0
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 6.9e-50 201.8 321 39.9
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 8.4e-48 194.9 282 42.2
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.2e-47 192.6 295 41.4
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.1e-47 191.8 277 40.4
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 9.3e-47 191.4 299 37.5
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 9.3e-47 191.4 313 39.0
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.2e-46 191.0 291 38.8
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.2e-46 191.0 296 39.2
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 1.6e-46 190.7 283 41.0
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.5e-46 189.5 293 39.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.9e-46 188.3 296 38.5
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 1.0e-45 188.0 294 39.5
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 1.0e-45 188.0 295 40.0
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.3e-45 187.6 309 37.9
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.3e-45 186.8 284 37.7
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 6.7e-45 185.3 283 42.4
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 8.7e-45 184.9 300 38.3
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 8.7e-45 184.9 314 39.2
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.1e-44 184.5 295 39.3
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.1e-44 184.5 295 39.3
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-44 184.5 286 40.2
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 3.3e-44 183.0 291 38.1
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.3e-44 182.6 297 37.7
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 7.4e-44 181.8 314 37.9
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.3e-43 181.0 285 39.3
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.3e-43 181.0 270 42.2
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.6e-43 180.6 289 38.4
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.8e-42 177.2 258 39.1
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 6.9e-42 175.3 285 40.0
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 9.0e-42 174.9 315 37.1
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.2e-41 174.5 298 37.2
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.5e-41 174.1 314 37.6
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.5e-41 172.6 281 39.5
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 5.9e-41 172.2 288 38.5
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.7e-40 170.6 358 31.6
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 6.5e-40 168.7 318 36.8
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.5e-40 168.7 260 38.8
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.4e-39 167.5 264 39.4
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.4e-39 167.5 359 33.7
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.9e-39 167.2 282 37.2
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.9e-39 167.2 272 39.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.5e-39 166.8 330 35.2
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 4.2e-39 166.0 341 34.3
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 5.5e-39 165.6 325 35.1
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 5.5e-39 165.6 274 38.3
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 9.4e-39 164.9 332 35.2
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.6e-38 164.1 311 37.0
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.6e-38 164.1 356 33.1
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 2.1e-38 163.7 345 33.0
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 2.1e-38 163.7 288 36.5
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.7e-38 163.3 283 37.1
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.7e-38 163.3 338 33.4
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.7e-38 163.3 345 33.9
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.0e-37 161.4 276 38.4
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 3.0e-37 159.8 365 31.8
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.9e-37 159.5 257 40.1
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.1e-37 159.1 276 37.0
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.1e-36 157.9 347 33.1
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.3e-35 154.5 396 30.1
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.2e-35 153.7 346 32.4
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.2e-35 153.7 346 32.4
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 4.8e-35 152.5 395 30.1
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 8.2e-35 151.8 356 32.3
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-34 151.4 361 30.7
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.1e-34 151.4 378 31.5
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.8e-34 150.6 387 31.8
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.4e-34 150.2 390 30.8
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 3.1e-34 149.8 381 30.7
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 5.3e-34 149.1 371 30.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 9.1e-34 148.3 400 30.0
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.0e-33 147.1 286 35.7
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.0e-33 147.1 398 29.6
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.5e-33 146.0 366 32.0
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 7.7e-33 145.2 390 28.5
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 7.7e-33 145.2 372 31.7
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 7.7e-33 145.2 382 30.1
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 1.0e-32 144.8 372 32.0
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.0e-32 144.8 385 30.4
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.3e-32 144.4 386 29.5
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.7e-32 144.1 389 30.1
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.9e-32 143.3 381 32.0
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 5.0e-32 142.5 385 29.4
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 6.5e-32 142.1 380 31.3
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 8.5e-32 141.7 411 29.9
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.5e-31 140.2 386 29.0
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.2e-31 139.8 197 41.1
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 4.2e-31 139.4 197 40.6
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 5.5e-31 139.0 395 29.6
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 2.1e-30 137.1 369 30.1
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.1e-30 137.1 204 39.2
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 3.6e-30 136.3 191 42.4
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.1e-30 135.6 396 28.8
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.0e-29 134.8 400 28.5
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.0e-29 134.8 387 28.9
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.0e-29 133.3 390 29.2
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 3.9e-29 132.9 387 30.5
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.9e-29 132.9 400 28.5
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 6.7e-29 132.1 389 27.0
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.5e-28 131.0 361 31.6
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 4.4e-28 129.4 396 30.3
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 9.7e-28 128.3 383 30.5
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.8e-27 126.7 189 39.7
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 9.1e-26 121.7 280 31.8
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.2e-25 121.3 227 39.6
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.2e-25 121.3 227 39.6
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 3.8e-24 116.3 405 27.2
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.5e-24 115.5 207 36.7
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.1e-23 114.8 303 31.7
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 5.5e-23 112.5 146 45.9
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 5.5e-23 112.5 146 45.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 6.1e-22 109.0 383 28.7
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.8e-21 107.5 204 37.3
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.8e-21 107.5 284 31.0
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 3.9e-21 106.3 159 42.8
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 5.7e-20 102.4 139 44.6
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.3e-19 101.3 165 38.8
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 4.8e-19 99.4 142 35.2
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 4.1e-18 96.3 172 39.5
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.6e-17 93.6 321 26.8
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.3e-16 91.3 76 51.3
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.2e-16 90.5 100 43.0
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 5.5e-15 85.9 133 37.6
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.7e-14 82.8 101 42.6
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 4.7e-14 82.8 96 38.5
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 6.1e-14 82.4 102 41.2
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.4e-13 81.3 140 35.0
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-13 81.3 182 30.8
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.3e-13 80.5 96 38.5
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.8e-13 78.6 141 33.3
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 8.8e-13 78.6 96 45.8
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 8.8e-13 78.6 96 38.5
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.5e-12 77.8 152 32.2
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 3.4e-12 76.6 79 49.4
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 2.4e-10 70.5 208 30.3
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.5e-09 66.6 126 37.3
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 4.2e-07 59.7 77 46.8


User provided reference genes

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