Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 0.0e+00 1162.5 672 100.0
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 5.8e-148 528.9 702 49.9
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 2.4e-133 480.3 721 47.2
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.2e-63 248.8 761 33.2
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 1.2e-60 238.8 259 56.4
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 9.5e-58 229.2 803 32.0
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.9e-53 214.9 825 33.7
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 9.2e-53 212.6 803 31.1
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 1.3e-51 208.8 795 31.9
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 3.9e-51 207.2 831 31.8
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 3.9e-51 207.2 831 31.8
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 3.3e-50 204.1 837 30.1
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 4.7e-49 200.3 871 29.0
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 1.5e-47 195.3 840 31.8
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 9.9e-47 192.6 834 29.5
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 7.1e-45 186.4 746 30.4
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.3e-43 182.2 841 28.2
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.5e-42 178.7 845 28.2
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.9e-42 178.3 817 31.1
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 9.6e-42 176.0 499 33.5
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.8e-41 174.5 762 29.9
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 3.6e-41 174.1 762 29.7
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 4.7e-41 173.7 770 28.8
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 8.1e-41 172.9 818 32.4
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.4e-40 172.2 817 29.3
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 1.4e-40 172.2 845 29.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.2e-39 169.1 884 28.8
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 2.0e-39 168.3 868 27.5
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.7e-38 165.2 830 28.8
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 8.4e-38 162.9 830 29.2
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.1e-37 162.5 703 29.4
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 3.2e-37 161.0 522 32.2
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.5e-36 157.5 831 27.1
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 4.6e-36 157.1 816 30.5
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 4.6e-36 157.1 781 29.7
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 1.3e-35 155.6 792 30.3
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 2.3e-35 154.8 780 32.8
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 2.3e-35 154.8 821 28.4
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 5.1e-35 153.7 837 28.4
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 1.9e-34 151.8 825 27.2
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.9e-34 151.8 462 38.1
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 1.9e-34 151.8 809 31.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.3e-34 150.6 832 28.1
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.6e-34 150.2 864 27.3
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.3e-33 149.1 840 27.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 1.6e-33 148.7 806 34.0
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 6.2e-33 146.7 815 28.0
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 1.8e-32 145.2 834 28.4
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 2.4e-32 144.8 836 28.2
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.4e-32 144.8 867 26.9
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 2.4e-32 144.8 825 30.5
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 2.4e-32 144.8 553 28.8
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 4.0e-32 144.1 855 27.1
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.2e-31 142.5 818 27.0
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 2.0e-31 141.7 925 26.7
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 2.6e-31 141.4 815 26.0
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 4.5e-31 140.6 705 28.4
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 5.8e-31 140.2 851 26.0
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.7e-30 138.7 872 25.1
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 1.7e-30 138.7 501 33.5
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.9e-30 137.9 703 27.9
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 8.4e-30 136.3 862 27.8
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 2.4e-29 134.8 836 26.0
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.6e-28 132.1 262 40.1
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 3.5e-28 131.0 839 26.7
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 1.0e-27 129.4 538 32.2
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.8e-27 128.6 720 28.3
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.8e-27 128.6 531 29.8
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 1.8e-27 128.6 512 31.1
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 1.8e-27 128.6 796 26.3
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 2.3e-27 128.3 759 26.2
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.3e-27 128.3 481 30.6
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 6.7e-27 126.7 500 33.6
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.9e-26 125.2 817 26.8
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 2.5e-26 124.8 764 29.8
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.3e-25 122.5 866 28.1
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 1.3e-25 122.5 890 25.2
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 2.8e-25 121.3 715 26.6
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 3.7e-25 120.9 760 27.0
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 6.2e-25 120.2 820 27.8
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.8e-24 118.6 871 24.7
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.2e-23 115.9 480 30.2
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 1.5e-23 115.5 829 25.0
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 1.5e-23 115.5 812 28.6
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 2.0e-23 115.2 453 27.8
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 2.6e-23 114.8 893 24.7
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 3.4e-23 114.4 860 28.4
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 3.4e-23 114.4 431 31.6
Lsat_1_v5_gn_0_18160 Lactuca sativa HOM05D004628 ORTHO05D005166 4.5e-23 114.0 116 57.8
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 5.8e-23 113.6 842 24.6
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 2.9e-22 111.3 525 27.8
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 8.4e-22 109.8 577 29.6
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.4e-21 109.0 770 26.9
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 3.2e-21 107.8 556 29.0
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 4.2e-21 107.5 902 25.2
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.1e-20 105.1 504 27.4
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.7e-20 104.8 770 26.2
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 6.0e-20 103.6 726 27.4
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 7.9e-20 103.2 761 26.5
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 7.9e-20 103.2 276 32.6
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 1.3e-19 102.4 708 25.3
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 3.9e-19 100.9 481 27.7
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 3.9e-19 100.9 900 24.4
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 3.9e-19 100.9 541 26.2
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 8.7e-19 99.8 813 24.8
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.1e-18 99.4 883 24.8
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.5e-18 99.0 707 24.8
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.5e-18 99.0 711 24.9
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 3.3e-18 97.8 220 38.6
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 3.3e-18 97.8 548 25.9
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 1.3e-17 95.9 849 23.9
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.1e-17 95.1 777 25.7
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 6.2e-17 93.6 842 28.1
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 8.2e-17 93.2 216 41.2
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 4.0e-16 90.9 526 29.8
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 1.5e-15 89.0 587 25.4
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.2e-14 85.1 138 43.5
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 1.1e-13 82.8 863 24.6
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 3.2e-13 81.3 494 28.9
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 2.1e-12 78.6 531 27.5
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 4.6e-12 77.4 237 29.1
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 7.9e-12 76.6 155 41.3
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 1.0e-11 76.3 269 33.8
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 1.0e-11 76.3 494 29.1
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 2.3e-11 75.1 138 44.9
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 3.0e-11 74.7 160 41.9
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 5.1e-11 73.9 523 27.9
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 3.3e-10 71.2 73 54.8
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 4.3e-10 70.9 223 29.6
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 7.4e-10 70.1 294 30.3
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 2.2e-09 68.6 286 35.7
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.2e-09 68.6 64 56.2
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 2.8e-09 68.2 214 30.4
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 2.8e-09 68.2 238 30.7
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 3.7e-09 67.8 186 34.9
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 3.7e-09 67.8 585 26.3
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.1e-08 66.2 275 29.5
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.1e-08 66.2 275 29.5
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 3.1e-08 64.7 219 28.8
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 4.1e-08 64.3 228 29.4
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 4.1e-08 64.3 221 29.4
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 5.3e-08 63.9 138 39.1
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 5.3e-08 63.9 196 32.1
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.3e-08 63.9 66 53.0
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 6.9e-08 63.5 242 29.3
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 9.0e-08 63.2 209 31.6
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 1.2e-07 62.8 204 30.4
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.2e-07 62.8 187 32.1
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 2.6e-07 61.6 211 32.2
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 3.4e-07 61.2 196 31.1
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 3.4e-07 61.2 223 30.5
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.4e-07 61.2 213 31.0
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 4.5e-07 60.8 185 33.0
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 5.9e-07 60.5 100 46.0
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 1.0e-06 59.7 88 39.8
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 2.2e-06 58.5 114 39.5
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 2.2e-06 58.5 216 29.2
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 3.8e-06 57.8 229 28.4
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 3.8e-06 57.8 192 30.2
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 5.0e-06 57.4 65 53.8
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 5.0e-06 57.4 185 29.7
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 5.0e-06 57.4 189 28.0
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 6.5e-06 57.0 181 31.5
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 6.5e-06 57.0 217 28.1
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 6.5e-06 57.0 209 32.5
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 8.5e-06 56.6 182 31.9
Hund07613 Selenicereus undatus HOM05D008208 ORTHO05D010143 8.5e-06 56.6 162 32.1
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 8.5e-06 56.6 537 25.0


User provided reference genes

Program Settings