Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G2699 Erigeron canadensis HOM05D002635 ORTHO05D002756 4.8e-91 337.8 168 100.0
HanXRQChr10g0299381 Helianthus annuus HOM05D002635 ORTHO05D002756 2.8e-59 232.3 176 68.8
Lsat_1_v5_gn_5_104780 Lactuca sativa HOM05D002635 ORTHO05D002756 3.6e-54 215.3 176 61.9
HanXRQChr16g0513621 Helianthus annuus HOM05D002635 ORTHO05D002756 1.0e-53 213.8 176 65.3
HanXRQChr03g0068081 Helianthus annuus HOM05D002635 ORTHO05D002756 1.8e-50 203.0 192 54.7
Dinv19431 Davidia involucrata HOM05D002635 ORTHO05D002756 1.9e-39 166.4 169 53.3
Lsat_1_v5_gn_9_121240 Lactuca sativa HOM05D002635 ORTHO05D002756 3.2e-39 165.6 168 51.8
Rhsim11G0121400 Rhododendron simsii HOM05D002635 ORTHO05D002756 5.5e-39 164.9 176 50.6
CSS0009773 Camellia sinensis var. sinensis HOM05D002635 ORTHO05D002756 1.4e-37 160.2 169 51.5
Hma1.2p1_1368F.1_g278530 Hydrangea macrophylla HOM05D002635 ORTHO05D002756 1.8e-37 159.8 173 50.3
Manes.10G115400 Manihot esculenta HOM05D002635 ORTHO05D002756 2.3e-37 159.5 183 48.6
Potri.003G003500 Populus trichocarpa HOM05D002635 ORTHO05D002756 4.0e-37 158.7 175 48.0
CSS0014121 Camellia sinensis var. sinensis HOM05D002635 ORTHO05D002756 5.2e-37 158.3 156 53.8
Actinidia00167 Actinidia chinensis HOM05D002635 ORTHO05D002756 1.1e-36 157.1 186 48.9
Sabra03G0001800 Salix brachista HOM05D002635 ORTHO05D002756 2.0e-36 156.4 175 48.6
Rhsim05G0116700 Rhododendron simsii HOM05D002635 ORTHO05D002756 3.3e-36 155.6 175 50.3
Sabra01G0172400 Salix brachista HOM05D002635 ORTHO05D002756 3.3e-36 155.6 169 49.7
Ciclev10001394m.g Citrus clementina HOM05D002635 ORTHO05D002756 1.7e-35 153.3 180 47.2
DCAR_006659 Daucus carota HOM05D002635 ORTHO05D002756 6.3e-35 151.4 166 49.4
Atru.chr6.455 Acer truncatum HOM05D002635 ORTHO05D002756 8.2e-35 151.0 170 47.1
Manes.07G026600 Manihot esculenta HOM05D002635 ORTHO05D002756 1.1e-34 150.6 183 45.9
THA.LOC104816831 Tarenaya hassleriana HOM05D002635 ORTHO05D002756 3.1e-34 149.1 168 46.4
MD08G1245000 Malus domestica HOM05D002635 ORTHO05D002756 4.1e-34 148.7 174 47.1
FvH4_5g28140 Fragaria vesca HOM05D002635 ORTHO05D002756 7.0e-34 147.9 165 49.1
FAN18G1247 Fragaria x ananassa HOM05D002635 ORTHO05D002756 7.0e-34 147.9 165 49.1
Potri.004G227000 Populus trichocarpa HOM05D002635 ORTHO05D002756 7.0e-34 147.9 170 46.5
PGR142G4069 Punica granatum HOM05D002635 ORTHO05D002756 9.1e-34 147.5 167 48.5
FAN04G1944 Fragaria x ananassa HOM05D002635 ORTHO05D002756 1.2e-33 147.1 165 47.9
PGR142G3898 Punica granatum HOM05D002635 ORTHO05D002756 1.6e-33 146.7 165 48.5
Cc02_g23390 Coffea canephora HOM05D002635 ORTHO05D002756 2.0e-33 146.4 172 45.9
Nn5g27275 Nelumbo nucifera HOM05D002635 ORTHO05D002756 2.0e-33 146.4 166 48.2
RcHm_v2.0_Chr7g0220291 Rosa chinensis HOM05D002635 ORTHO05D002756 2.0e-33 146.4 175 48.0
AUR62000568 Chenopodium quinoa HOM05D002635 ORTHO05D002756 4.5e-33 145.2 182 45.1
TWI59G0859 Tripterygium wilfordii HOM05D002635 ORTHO05D002756 4.5e-33 145.2 194 43.3
FAN08G2963 Fragaria x ananassa HOM05D002635 ORTHO05D002756 5.9e-33 144.8 165 48.5
TAR381G0357 Trochodendron aralioides HOM05D002635 ORTHO05D002756 5.9e-33 144.8 168 46.4
MELO3C016485.2 Cucumis melo HOM05D002635 ORTHO05D002756 7.7e-33 144.4 175 46.3
Eucgr.G00246 Eucalyptus grandis HOM05D002635 ORTHO05D002756 1.3e-32 143.7 164 48.2
THA.LOC104823706 Tarenaya hassleriana HOM05D002635 ORTHO05D002756 1.3e-32 143.7 162 46.9
Thecc.02G014300 Theobroma cacao HOM05D002635 ORTHO05D002756 1.3e-32 143.7 169 46.2
CsaV3_3G006550 Cucumis sativus L. HOM05D002635 ORTHO05D002756 1.7e-32 143.3 175 46.9
THA.LOC104820362 Tarenaya hassleriana HOM05D002635 ORTHO05D002756 1.7e-32 143.3 185 42.2
AL1G67330 Arabidopsis lyrata HOM05D002635 ORTHO05D002756 2.2e-32 142.9 172 47.7
Prupe.1G582400 Prunus persica HOM05D002635 ORTHO05D002756 2.2e-32 142.9 174 46.6
Sc09g0002020 Simmondsia chinensis HOM05D002635 ORTHO05D002756 2.9e-32 142.5 168 43.5
Migut.N00855 Erythranthe guttata HOM05D002635 ORTHO05D002756 3.8e-32 142.1 165 46.7
Carub.0002s0693 Capsella rubella HOM05D002635 ORTHO05D002756 5.0e-32 141.7 160 49.4
Solyc01g103200.4 Solanum lycopersicum HOM05D002635 ORTHO05D002756 6.5e-32 141.4 181 43.6
Sopen01g045610 Solanum pennellii HOM05D002635 ORTHO05D002756 6.5e-32 141.4 181 43.6
Sopen01g045630 Solanum pennellii HOM05D002635 ORTHO05D002756 6.5e-32 141.4 181 43.6
TWI23G0700 Tripterygium wilfordii HOM05D002635 ORTHO05D002756 6.5e-32 141.4 169 46.2
Duzib052G0871 Durio zibethinus HOM05D002635 ORTHO05D002756 1.5e-31 140.2 177 44.6
Thhalv10023548m.g Eutrema salsugineum HOM05D002635 ORTHO05D002756 1.5e-31 140.2 160 48.8
TAR624G0320 Trochodendron aralioides HOM05D002635 ORTHO05D002756 1.5e-31 140.2 174 45.4
BcaB04g20182 Brassica carinata HOM05D002635 ORTHO05D002756 2.5e-31 139.4 160 47.5
CARHR054490 Cardamine hirsuta HOM05D002635 ORTHO05D002756 2.5e-31 139.4 158 49.4
Nitab4.5_0001057g0160 Nicotiana tabacum HOM05D002635 ORTHO05D002756 2.5e-31 139.4 167 45.5
MSTRG.27874 Avicennia marina HOM05D002635 ORTHO05D002756 3.2e-31 139.0 168 44.6
PGSC0003DMG400024875 Solanum tuberosum HOM05D002635 ORTHO05D002756 4.2e-31 138.7 181 42.5
QL02p101856 Quercus lobata HOM05D002635 ORTHO05D002756 7.2e-31 137.9 175 45.7
arahy.Tifrunner.gnm1.ann1.3P7FNU Arachis hypogaea HOM05D002635 ORTHO05D002756 9.4e-31 137.5 175 46.9
arahy.Tifrunner.gnm1.ann1.I3LLGY Arachis hypogaea HOM05D002635 ORTHO05D002756 9.4e-31 137.5 175 46.9
COL.COLO4_17694 Corchorus olitorius HOM05D002635 ORTHO05D002756 9.4e-31 137.5 164 46.3
Ah.06g188440 Amaranthus hybridus HOM05D002635 ORTHO05D002756 1.2e-30 137.1 166 45.2
MSTRG.16479 Avicennia marina HOM05D002635 ORTHO05D002756 1.2e-30 137.1 167 44.9
BcaC04g22106 Brassica carinata HOM05D002635 ORTHO05D002756 1.6e-30 136.7 161 48.4
C09p23290 Brassica napus HOM05D002635 ORTHO05D002756 1.6e-30 136.7 161 48.4
BolC9t55247H Brassica oleracea HOM05D002635 ORTHO05D002756 1.6e-30 136.7 161 48.4
PSO017G5438 Papaver somniferum HOM05D002635 ORTHO05D002756 1.6e-30 136.7 176 45.5
CAN.G855.35 Capsicum annuum HOM05D002635 ORTHO05D002756 2.1e-30 136.3 172 45.3
PSO170G5519 Papaver somniferum HOM05D002635 ORTHO05D002756 2.1e-30 136.3 176 44.9
BcaC06g31780 Brassica carinata HOM05D002635 ORTHO05D002756 2.7e-30 136.0 160 45.6
CiPaw.06G175900 Carya illinoinensis HOM05D002635 ORTHO05D002756 2.7e-30 136.0 169 46.2
Gohir.A03G216000 Gossypium hirsutum HOM05D002635 ORTHO05D002756 2.7e-30 136.0 179 42.5
Aa31LG1G5410 Aethionema arabicum HOM05D002635 ORTHO05D002756 3.6e-30 135.6 160 48.1
Phvul.003G075300 Phaseolus vulgaris HOM05D002635 ORTHO05D002756 3.6e-30 135.6 176 46.0
BcaC02g10709 Brassica carinata HOM05D002635 ORTHO05D002756 4.7e-30 135.2 160 46.2
C04p26980 Brassica napus HOM05D002635 ORTHO05D002756 4.7e-30 135.2 160 46.2
BolC4t24099H Brassica oleracea HOM05D002635 ORTHO05D002756 4.7e-30 135.2 160 46.2
Nitab4.5_0002546g0060 Nicotiana tabacum HOM05D002635 ORTHO05D002756 4.7e-30 135.2 167 44.3
Gohir.D02G237600 Gossypium hirsutum HOM05D002635 ORTHO05D002756 6.1e-30 134.8 179 41.9
Gorai.005G266100 Gossypium raimondii HOM05D002635 ORTHO05D002756 6.1e-30 134.8 179 42.5
Peaxi162Scf00011g01619 Petunia axillaris HOM05D002635 ORTHO05D002756 8.0e-30 134.4 165 41.8
Sp2g05650 Schrenkiella parvula HOM05D002635 ORTHO05D002756 8.0e-30 134.4 160 46.9
A01p28120 Brassica napus HOM05D002635 ORTHO05D002756 1.0e-29 134.0 160 48.1
BraA01t02939Z Brassica rapa HOM05D002635 ORTHO05D002756 1.0e-29 134.0 160 48.1
Ca_00022_v3 Cicer arietinum L. HOM05D002635 ORTHO05D002756 1.0e-29 134.0 175 43.4
VMungo1215G1734 Vigna mungo HOM05D002635 ORTHO05D002756 1.0e-29 134.0 186 43.5
Lj9P296T23 Lonicera japonica HOM05D002635 ORTHO05D002756 1.4e-29 133.7 128 53.9
Sed0008691 Sechium edule HOM05D002635 ORTHO05D002756 1.4e-29 133.7 175 44.0
Haze_10023 Corylus avellana HOM05D002635 ORTHO05D002756 1.8e-29 133.3 163 48.5
Duzib132G0923 Durio zibethinus HOM05D002635 ORTHO05D002756 2.3e-29 132.9 169 42.6
Dinv29614 Davidia involucrata HOM05D002635 ORTHO05D002756 3.0e-29 132.5 128 56.2
Lj6g0026247 Lotus japonicus HOM05D002635 ORTHO05D002756 3.0e-29 132.5 175 44.0
MSTRG.5197 Avicennia marina HOM05D002635 ORTHO05D002756 4.0e-29 132.1 164 43.9
BraA09t37489Z Brassica rapa HOM05D002635 ORTHO05D002756 4.0e-29 132.1 161 47.2
DCAR_021340 Daucus carota HOM05D002635 ORTHO05D002756 5.2e-29 131.7 186 42.5
MBI03_g28424_MAGBIO Magnolia biondii HOM05D002635 ORTHO05D002756 5.2e-29 131.7 186 39.2
Aa31LG2G11240 Aethionema arabicum HOM05D002635 ORTHO05D002756 8.8e-29 131.0 172 43.0
BcaC09g49521 Brassica carinata HOM05D002635 ORTHO05D002756 8.8e-29 131.0 160 45.6
A09p18660 Brassica napus HOM05D002635 ORTHO05D002756 8.8e-29 131.0 161 46.6
C01p35650 Brassica napus HOM05D002635 ORTHO05D002756 8.8e-29 131.0 160 45.6
BolC1t03524H Brassica oleracea HOM05D002635 ORTHO05D002756 8.8e-29 131.0 160 45.6
Cfa004466 Carpinus fangiana HOM05D002635 ORTHO05D002756 8.8e-29 131.0 163 47.9
CiPaw.05G002800 Carya illinoinensis HOM05D002635 ORTHO05D002756 8.8e-29 131.0 169 45.0
Gohir.A04G134000 Gossypium hirsutum HOM05D002635 ORTHO05D002756 1.2e-28 130.6 177 42.4
Medtr2g005260 Medicago truncatula HOM05D002635 ORTHO05D002756 1.2e-28 130.6 175 42.3
unitig_26.g9163 Utricularia gibba HOM05D002635 ORTHO05D002756 1.2e-28 130.6 190 38.9
Glyma.16G001300 Glycine max HOM05D002635 ORTHO05D002756 1.5e-28 130.2 168 44.6
Gorai.012G170100 Gossypium raimondii HOM05D002635 ORTHO05D002756 1.5e-28 130.2 169 41.4
Gohir.D04G177200 Gossypium hirsutum HOM05D002635 ORTHO05D002756 2.0e-28 129.8 169 40.8
TPR.G2087 Trifolium pratense HOM05D002635 ORTHO05D002756 2.0e-28 129.8 175 42.9
Gohir.D01G131300 Gossypium hirsutum HOM05D002635 ORTHO05D002756 2.6e-28 129.4 177 41.8
Gorai.002G163000 Gossypium raimondii HOM05D002635 ORTHO05D002756 2.6e-28 129.4 177 41.8
Psat1g223800 Pisum sativum HOM05D002635 ORTHO05D002756 2.6e-28 129.4 175 42.9
Sc16g0009750 Simmondsia chinensis HOM05D002635 ORTHO05D002756 3.4e-28 129.0 168 41.7
Glyma.12G165000 Glycine max HOM05D002635 ORTHO05D002756 4.4e-28 128.6 161 45.3
Oeu010215.1 Olea europaea HOM05D002635 ORTHO05D002756 5.7e-28 128.3 172 43.0
unitig_749.g14215 Utricularia gibba HOM05D002635 ORTHO05D002756 7.5e-28 127.9 169 40.8
VMungo0540G0642 Vigna mungo HOM05D002635 ORTHO05D002756 2.2e-27 126.3 169 42.6
BcaB07g31158 Brassica carinata HOM05D002635 ORTHO05D002756 3.7e-27 125.6 164 43.3
DCAR_031795 Daucus carota HOM05D002635 ORTHO05D002756 3.7e-27 125.6 186 40.9
Phvul.006G220600 Phaseolus vulgaris HOM05D002635 ORTHO05D002756 6.3e-27 124.8 169 42.0
Aqoxy5G00844 Aquilegia oxysepala HOM05D002635 ORTHO05D002756 8.3e-27 124.4 165 38.8
SHI04877 Sapria himalayana HOM05D002635 ORTHO05D002756 1.8e-26 123.2 163 39.3
Hund07200 Selenicereus undatus HOM05D002635 ORTHO05D002756 1.8e-26 123.2 161 39.8
AT1G57680 Arabidopsis thaliana HOM05D002635 ORTHO05D002756 2.4e-26 122.9 139 47.5
ATR1089G101 Amborella trichopoda HOM05D002635 ORTHO05D002756 2.9e-24 115.9 168 41.1
Actinidia26186 Actinidia chinensis HOM05D002635 ORTHO05D002756 3.8e-24 115.5 89 65.2
Os01g0885200 Oryza sativa ssp. japonica HOM05D002635 ORTHO05D002756 1.1e-23 114.0 176 40.3
Migut.B00736 Erythranthe guttata HOM05D002635 ORTHO05D002756 1.9e-23 113.2 150 42.0
Oeu058643.1 Olea europaea HOM05D002635 ORTHO05D002756 4.2e-23 112.1 172 41.3
Glyma.07G273400 Glycine max HOM05D002635 ORTHO05D002756 5.5e-23 111.7 169 42.6
HPP92_004661 Vanilla planifolia HOM05D002635 ORTHO05D002756 7.2e-23 111.3 167 40.1
Mapoly0003s0203 Marchantia polymorpha HOM05D002635 ORTHO05D002756 9.4e-23 110.9 174 36.8
Medtr4g081900 Medicago truncatula HOM05D002635 ORTHO05D002756 1.2e-20 104.0 167 36.5
Zm00001eb366030 Zea mays HOM05D002635 ORTHO05D002756 4.4e-20 102.1 169 37.9
Zm00001eb145510 Zea mays HOM05D002635 ORTHO05D002756 6.3e-19 98.2 137 41.6
SGA_v2.0_scaffold131G34378 Striga asiatica HOM05D002635 ORTHO05D000003 5.4e-18 95.1 125 38.4
GSVIVG01023219001 Vitis vinifera HOM05D002635 ORTHO05D002756 5.4e-18 95.1 142 45.1
unitig_699.g19846 Utricularia gibba HOM05D002635 ORTHO05D002756 9.2e-18 94.4 95 50.5
TPR.G34019 Trifolium pratense HOM05D002635 ORTHO05D002756 2.0e-17 93.2 166 37.3
Medtr4g081890 Medicago truncatula HOM05D002635 ORTHO05D002756 2.7e-17 92.8 161 36.0
Pp3c2_5540 Physcomitrium patens HOM05D002635 ORTHO05D002756 5.9e-17 91.7 187 34.2
SEGI_27222 Sequoiadendron giganteum HOM05D002635 ORTHO05D002756 7.7e-17 91.3 130 41.5
HPP92_004537 Vanilla planifolia HOM05D002635 ORTHO05D002756 7.7e-17 91.3 165 35.8
Pp3c1_36080 Physcomitrium patens HOM05D002635 ORTHO05D002756 3.8e-16 89.0 187 32.1
SMO266G0089 Selaginella moellendorffii HOM05D002635 ORTHO05D002756 3.8e-16 89.0 120 39.2
Oeu021642.1 Olea europaea HOM05D002635 ORTHO05D002756 2.8e-14 82.8 142 43.0
Oeu021643.1 Olea europaea HOM05D002635 ORTHO05D002756 2.8e-14 82.8 142 43.0
Oeu021644.1 Olea europaea HOM05D002635 ORTHO05D002756 2.8e-14 82.8 142 43.0
Oeu021645.1 Olea europaea HOM05D002635 ORTHO05D002756 2.8e-14 82.8 142 43.0
ATR0737G083 Amborella trichopoda HOM05D002635 ORTHO05D002756 4.9e-11 72.0 99 39.4
Os04g0443700 Oryza sativa ssp. japonica HOM05D002635 ORTHO05D002756 1.8e-10 70.1 123 33.3
SHI32508 Sapria himalayana HOM05D002635 ORTHO05D002756 1.6e-09 67.0 83 45.8
Hma1.2p1_0157F.1_g068985 Hydrangea macrophylla HOM05D002635 ORTHO05D002756 4.7e-06 55.5 47 53.2
MSTRG.26992 Avicennia marina HOM05D002635 ORTHO05D002756 8.0e-06 54.7 78 35.9


User provided reference genes

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