Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 9.3e-96 353.6 187 100.0
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 2.4e-35 152.9 205 54.1
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 2.1e-31 139.8 148 60.8
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 1.8e-30 136.7 201 50.2
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 2.2e-28 129.8 203 44.8
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 2.2e-28 129.8 203 44.8
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 4.9e-28 128.6 204 48.0
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 6.4e-28 128.3 205 49.3
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 8.3e-28 127.9 199 49.2
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 1.1e-27 127.5 204 49.0
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 2.4e-27 126.3 203 46.3
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.2e-27 125.9 208 44.2
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.2e-27 125.9 208 44.2
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 3.2e-27 125.9 204 49.5
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 4.1e-27 125.6 199 50.3
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 9.2e-27 124.4 191 49.2
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 2.7e-26 122.9 201 47.3
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.7e-26 122.9 186 46.8
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 6.0e-26 121.7 197 46.2
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 7.8e-26 121.3 185 47.0
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 1.0e-25 120.9 204 46.1
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.0e-25 120.9 185 47.0
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.0e-25 120.9 185 47.0
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 1.3e-25 120.6 203 46.3
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 1.7e-25 120.2 200 47.5
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 2.3e-25 119.8 203 46.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.3e-25 119.8 185 46.5
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 3.0e-25 119.4 210 46.7
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.9e-25 119.0 209 45.9
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 8.6e-25 117.9 203 47.3
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 1.1e-24 117.5 203 45.3
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.1e-24 117.5 196 44.4
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 1.5e-24 117.1 206 46.6
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 1.5e-24 117.1 202 46.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 1.9e-24 116.7 188 44.7
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 5.6e-24 115.2 200 46.5
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 7.3e-24 114.8 204 45.6
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 9.5e-24 114.4 204 45.6
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.6e-23 113.6 194 46.4
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.1e-23 113.2 173 43.4
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 2.1e-23 113.2 211 42.2
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 2.8e-23 112.8 203 44.3
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 2.8e-23 112.8 204 46.1
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 3.6e-23 112.5 221 42.5
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 4.7e-23 112.1 206 45.1
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.2e-23 111.7 191 43.5
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 1.1e-22 110.9 197 42.1
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.4e-22 110.5 210 41.9
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 1.4e-22 110.5 190 45.3
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.8e-22 110.2 203 47.3
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.8e-22 110.2 185 44.9
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 1.8e-22 110.2 205 46.3
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 2.3e-22 109.8 203 42.9
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.1e-22 109.4 175 42.9
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 3.1e-22 109.4 205 43.9
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 4.0e-22 109.0 204 45.1
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 1.2e-21 107.5 121 62.8
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.2e-21 107.5 184 42.9
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.4e-21 105.9 203 45.3
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 3.4e-21 105.9 183 43.2
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 1.3e-20 104.0 200 46.0
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 6.4e-20 101.7 198 44.9
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 6.4e-20 101.7 172 44.8
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 8.3e-20 101.3 206 44.7
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 1.4e-19 100.5 205 45.9
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-19 100.1 187 41.7
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 3.2e-19 99.4 213 38.5
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 3.2e-19 99.4 165 44.2
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.1e-19 99.0 193 40.9
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 5.4e-19 98.6 187 41.2
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 5.4e-19 98.6 187 41.2
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 9.2e-19 97.8 187 41.2
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 9.2e-19 97.8 187 41.2
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 9.2e-19 97.8 189 40.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.2e-19 97.8 200 44.0
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.2e-18 97.4 205 45.9
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 1.6e-18 97.1 188 41.5
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 2.1e-18 96.7 132 51.5
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.5e-18 95.9 205 39.0
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 6.0e-18 95.1 192 38.5
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 7.8e-18 94.7 168 45.2
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 1.3e-17 94.0 190 38.9
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 1.7e-17 93.6 188 43.6
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.7e-17 93.6 197 44.7
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 2.3e-17 93.2 183 41.5
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 3.0e-17 92.8 215 40.9
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 5.1e-17 92.0 204 38.7
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 8.6e-17 91.3 204 41.7
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 1.1e-16 90.9 197 41.1
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.9e-16 90.1 194 39.2
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 2.5e-16 89.7 199 40.2
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 3.3e-16 89.4 213 37.6
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 3.3e-16 89.4 181 43.1
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 5.6e-16 88.6 184 40.8
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.6e-16 88.6 203 42.4
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 5.6e-16 88.6 172 42.4
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 7.3e-16 88.2 164 43.3
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 7.3e-16 88.2 183 40.4
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 1.2e-15 87.4 171 40.9
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 1.6e-15 87.0 188 42.6
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.1e-15 86.7 185 37.8
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 2.1e-15 86.7 190 42.1
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 2.8e-15 86.3 204 38.2
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.6e-15 85.9 205 39.5
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 3.6e-15 85.9 179 41.9
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 4.7e-15 85.5 136 45.6
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 6.2e-15 85.1 139 43.2
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 1.4e-14 84.0 207 38.6
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.8e-14 83.6 214 37.9
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.3e-14 83.2 155 41.9
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 3.1e-14 82.8 214 37.9
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 4.0e-14 82.4 173 38.7
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 5.2e-14 82.0 159 41.5
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 6.8e-14 81.6 211 37.9
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 6.8e-14 81.6 214 37.4
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 6.8e-14 81.6 192 39.1
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 1.2e-13 80.9 206 37.4
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.2e-13 80.9 180 40.6
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.5e-13 80.5 204 38.2
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.5e-13 80.5 206 35.0
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 2.6e-13 79.7 187 38.5
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 2.6e-13 79.7 181 40.3
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 2.6e-13 79.7 188 39.4
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 3.4e-13 79.3 206 36.9
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 3.4e-13 79.3 212 38.7
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 4.4e-13 79.0 161 42.2
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.8e-13 78.6 211 39.8
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 7.6e-13 78.2 129 44.2
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 9.9e-13 77.8 203 34.5
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-12 77.4 132 43.9
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 1.7e-12 77.0 150 41.3
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-12 77.0 202 37.1
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 1.7e-12 77.0 202 37.1
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.9e-12 76.3 202 37.1
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 3.7e-12 75.9 202 36.1
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 3.7e-12 75.9 202 36.1
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 3.7e-12 75.9 206 37.9
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 8.4e-12 74.7 160 39.4
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 8.4e-12 74.7 160 39.4
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.1e-11 74.3 176 38.1
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 1.9e-11 73.6 186 38.2
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.4e-11 73.2 173 37.0
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.4e-11 73.2 215 36.7
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 9.2e-11 71.2 99 56.6
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 1.2e-10 70.9 127 40.2
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 1.6e-10 70.5 163 37.4
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.6e-10 70.5 216 36.1
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 1.6e-10 70.5 84 52.4
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 1.6e-10 70.5 214 38.3
Nitab4.5_0001004g0030 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.0e-09 67.8 134 41.0
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.3e-09 67.4 139 41.0
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 1.3e-09 67.4 187 37.4
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 1.7e-09 67.0 201 34.3
Nitab4.5_0002431g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 3.9e-09 65.9 95 44.2
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 3.9e-09 65.9 170 37.6
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 1.9e-08 63.5 108 39.8
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 4.3e-08 62.4 117 42.7
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 5.6e-08 62.0 199 37.7
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 1.2e-07 60.8 76 55.3
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 1.6e-07 60.5 82 54.9
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 2.1e-07 60.1 207 35.3
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 4.7e-07 58.9 149 36.9
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 4.7e-07 58.9 115 35.7
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 6.2e-07 58.5 40 72.5
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 1.4e-06 57.4 221 31.7
Os01g0676900 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.4e-06 57.4 186 34.4
Solyc07g018370.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 1.4e-06 57.4 127 33.1
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 2.4e-06 56.6 200 36.0


User provided reference genes

Program Settings