Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G2376 Erigeron canadensis HOM05D009784 ORTHO05D010235 4.9e-177 624.4 322 100.0
ECA234G1207 Erigeron canadensis HOM05D009784 ORTHO05D000088 1.3e-105 387.1 285 70.2
HanXRQChr05g0151691 Helianthus annuus HOM05D009784 ORTHO05D010235 1.7e-60 237.3 285 44.6
HanXRQChr08g0216601 Helianthus annuus HOM05D009784 ORTHO05D010235 1.6e-58 230.7 317 42.6
ECA234G4443 Erigeron canadensis HOM05D009784 ORTHO05D010235 2.2e-52 210.3 322 41.6
Lsat_1_v5_gn_4_8941 Lactuca sativa HOM05D009784 ORTHO05D000088 3.2e-51 206.5 284 46.5
HanXRQChr17g0570521 Helianthus annuus HOM05D009784 ORTHO05D010235 1.3e-49 201.1 309 41.7
HanXRQChr12g0380731 Helianthus annuus HOM05D009784 ORTHO05D010235 1.5e-45 187.6 288 42.4
ECA234G0573 Erigeron canadensis HOM05D009784 ORTHO05D010235 2.6e-45 186.8 265 40.0
ECA234G3336 Erigeron canadensis HOM05D000015 ORTHO05D000270 5.4e-43 179.1 295 38.0
Lsat_1_v5_gn_4_9181 Lactuca sativa HOM05D009784 ORTHO05D010235 9.2e-43 178.3 272 40.8
Lsat_1_v5_gn_4_9001 Lactuca sativa HOM05D009784 ORTHO05D000088 1.2e-37 161.4 266 39.8
HanXRQChr17g0570531 Helianthus annuus HOM05D009784 ORTHO05D010235 1.4e-30 137.9 230 42.2
HanXRQChr07g0191931 Helianthus annuus HOM05D009784 ORTHO05D010235 1.6e-26 124.4 267 31.8
ECA246G2169 Erigeron canadensis HOM05D000983 ORTHO05D006794 7.9e-26 122.1 279 32.6
HanXRQChr07g0191951 Helianthus annuus HOM05D009784 ORTHO05D010235 1.3e-25 121.3 269 33.8
Lsat_1_v5_gn_3_51441 Lactuca sativa HOM05D009784 ORTHO05D010235 2.5e-24 117.1 313 27.8
HanXRQChr06g0183971 Helianthus annuus HOM05D009784 ORTHO05D010235 9.6e-24 115.2 279 35.5
Lsat_1_v5_gn_4_9021 Lactuca sativa HOM05D009784 ORTHO05D000088 6.2e-23 112.5 107 47.7
HanXRQChr07g0191941 Helianthus annuus HOM05D009784 ORTHO05D010235 1.1e-22 111.7 298 29.5
Dinv26758 Davidia involucrata HOM05D000823 ORTHO05D000088 2.1e-18 97.4 279 26.2
CSS0024635 Camellia sinensis var. sinensis HOM05D009784 ORTHO05D010235 1.0e-17 95.1 250 26.8
Thecc.01G047300 Theobroma cacao HOM05D000823 ORTHO05D000088 4.3e-16 89.7 282 24.8
PGR102G2553 Punica granatum HOM05D000823 ORTHO05D000088 1.1e-14 85.1 256 27.0
Cc07_g05490 Coffea canephora HOM05D000823 ORTHO05D000088 1.4e-14 84.7 271 26.2
CDE04G1885 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 5.3e-14 82.8 99 42.4
Gohir.D03G019700 Gossypium hirsutum HOM05D000823 ORTHO05D010235 1.2e-13 81.6 311 23.8
Gorai.003G020400 Gossypium raimondii HOM05D000823 ORTHO05D010235 1.2e-13 81.6 311 23.8
Gohir.A02G160800 Gossypium hirsutum HOM05D000823 ORTHO05D010235 5.8e-13 79.3 309 23.6
Cc07_g05480 Coffea canephora HOM05D000823 ORTHO05D000088 1.3e-12 78.2 277 25.6
Gorai.003G020600 Gossypium raimondii HOM05D000823 ORTHO05D010235 1.3e-12 78.2 315 23.5
Haze_08008 Corylus avellana HOM05D000823 ORTHO05D000088 1.7e-12 77.8 278 24.1
ECA246G4930 Erigeron canadensis HOM05D009106 ORTHO05D010235 3.8e-12 76.6 249 26.1
Gohir.D03G019725 Gossypium hirsutum HOM05D000823 ORTHO05D010235 3.8e-12 76.6 315 23.5
PGR102G0754 Punica granatum HOM05D000823 ORTHO05D000088 3.8e-12 76.6 270 26.3
Gorai.003G020700 Gossypium raimondii HOM05D000823 ORTHO05D000088 8.4e-12 75.5 268 22.8
ECA246G4121 Erigeron canadensis HOM05D009784 ORTHO05D010235 1.4e-11 74.7 104 39.4
Gohir.A02G160700 Gossypium hirsutum HOM05D000823 ORTHO05D000088 1.9e-11 74.3 318 21.4
SGA_v2.0_scaffold204G41626 Striga asiatica HOM05D000823 ORTHO05D000088 3.2e-11 73.6 269 24.5
Dinv26764 Davidia involucrata HOM05D000823 ORTHO05D000088 5.5e-11 72.8 105 37.1
Lsat_1_v5_gn_3_94261 Lactuca sativa HOM05D009784 ORTHO05D000088 7.1e-11 72.4 102 37.3
MD03G1230100 Malus domestica HOM05D000823 ORTHO05D000088 1.6e-10 71.2 273 24.9
MSTRG.23799 Avicennia marina HOM05D010976 ORTHO05D000088 2.1e-10 70.9 269 23.8
MD00G1162200 Malus domestica HOM05D000888 ORTHO05D000740 2.1e-10 70.9 219 23.3
Ciclev10026137m.g Citrus clementina HOM05D000823 ORTHO05D000088 1.0e-09 68.6 282 25.2
Cc01_g06500 Coffea canephora HOM05D005797 ORTHO05D000088 1.3e-09 68.2 119 35.3
PSO017G3561 Papaver somniferum HOM05D000823 ORTHO05D000088 1.3e-09 68.2 263 23.2
Manes.13G130800 Manihot esculenta HOM05D000823 ORTHO05D000088 1.8e-09 67.8 278 23.7
CSS0019656 Camellia sinensis var. sinensis HOM05D000823 ORTHO05D000088 2.3e-09 67.4 108 33.3
PSO675G8304 Papaver somniferum HOM05D000395 ORTHO05D000088 2.3e-09 67.4 282 23.4
CiPaw.02G012800 Carya illinoinensis HOM05D000823 ORTHO05D000088 3.0e-09 67.0 275 22.9
Prupe.4G206300 Prunus persica HOM05D000823 ORTHO05D000088 3.9e-09 66.6 257 24.1
PSO170G3350 Papaver somniferum HOM05D000823 ORTHO05D000088 8.7e-09 65.5 107 29.9
FAN15G0739 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.9e-08 64.3 107 29.9
Prupe.4G178200 Prunus persica HOM05D000823 ORTHO05D000088 1.9e-08 64.3 262 24.0
CsaV3_6G042810 Cucumis sativus L. HOM05D000823 ORTHO05D000088 2.5e-08 63.9 279 21.1
PSO675G0610 Papaver somniferum HOM05D000888 ORTHO05D000740 2.5e-08 63.9 265 21.9
CSS0012563 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 3.3e-08 63.5 297 22.9
QL93p0128_0020 Quercus lobata HOM05D000395 ORTHO05D000088 3.3e-08 63.5 284 23.2
TAR628G1487 Trochodendron aralioides HOM05D000823 ORTHO05D000088 3.3e-08 63.5 105 31.4
PSO675G1309 Papaver somniferum HOM05D000395 ORTHO05D000088 4.3e-08 63.2 258 23.3
FvH4_2g06960 Fragaria vesca HOM05D000823 ORTHO05D000088 5.7e-08 62.8 267 25.1
RhsimUnG0089900 Rhododendron simsii HOM05D008110 ORTHO05D000088 5.7e-08 62.8 283 23.7
SalBow1G6354 Salvia bowleyana HOM05D010976 ORTHO05D000088 5.7e-08 62.8 97 30.9
Peaxi162Scf00234g00222 Petunia axillaris HOM05D009106 ORTHO05D010235 7.4e-08 62.4 261 23.0
PSO832G4270 Papaver somniferum HOM05D000395 ORTHO05D000088 9.6e-08 62.0 107 36.4
Prupe.4G178400 Prunus persica HOM05D000823 ORTHO05D000088 9.6e-08 62.0 259 23.9
Prupe.7G064600 Prunus persica HOM05D000823 ORTHO05D000088 9.6e-08 62.0 264 22.7
Sed0022882 Sechium edule HOM05D000823 ORTHO05D000088 9.6e-08 62.0 282 18.8
SEGI_23984 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 9.6e-08 62.0 99 33.3
TWI56G0742 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 9.6e-08 62.0 102 29.4
Aqoxy3G02207 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 1.3e-07 61.6 100 32.0
QL02p006491 Quercus lobata HOM05D000823 ORTHO05D000088 1.3e-07 61.6 104 35.6
Solyc06g074160.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 1.3e-07 61.6 273 26.0
MD15G1273900 Malus domestica HOM05D000395 ORTHO05D000088 1.6e-07 61.2 102 32.4
Medtr3g098790 Medicago truncatula HOM05D000395 ORTHO05D000088 1.6e-07 61.2 283 23.3
QL02p083510 Quercus lobata HOM05D000395 ORTHO05D000088 1.6e-07 61.2 276 23.2
QL09p042765 Quercus lobata HOM05D000395 ORTHO05D000088 1.6e-07 61.2 284 23.6
Sopen06g030580 Solanum pennellii HOM05D000823 ORTHO05D000088 1.6e-07 61.2 289 26.0
Haze_08009 Corylus avellana HOM05D000823 ORTHO05D000088 2.1e-07 60.8 102 33.3
FvH4_3g19710 Fragaria vesca HOM05D000823 ORTHO05D000088 2.1e-07 60.8 288 24.0
PGR102G3079 Punica granatum HOM05D000823 ORTHO05D000088 2.1e-07 60.8 300 23.0
SGA_v2.0_scaffold15G07218 Striga asiatica HOM05D000395 ORTHO05D000088 2.1e-07 60.8 239 27.2
CDE01G0565 Ceratophyllum demersum HOM05D000823 ORTHO05D000088 2.8e-07 60.5 239 25.9
Dinv26761 Davidia involucrata HOM05D000395 ORTHO05D000088 2.8e-07 60.5 302 21.5
FAN13G1961 Fragaria x ananassa HOM05D000823 ORTHO05D000088 2.8e-07 60.5 106 32.1
Nn5g29405 Nelumbo nucifera HOM05D000823 ORTHO05D000088 2.8e-07 60.5 103 32.0
QL01p054148 Quercus lobata HOM05D000395 ORTHO05D000088 2.8e-07 60.5 284 22.9
QL02p058028 Quercus lobata HOM05D000395 ORTHO05D000088 2.8e-07 60.5 284 22.9
QL02p097973 Quercus lobata HOM05D000395 ORTHO05D000088 2.8e-07 60.5 284 22.9
QL03p067026 Quercus lobata HOM05D000395 ORTHO05D000088 2.8e-07 60.5 284 22.9
RcHm_v2.0_Chr2g0103411 Rosa chinensis HOM05D000395 ORTHO05D000088 2.8e-07 60.5 114 30.7
SalBow1G7999 Salvia bowleyana HOM05D010976 ORTHO05D000088 2.8e-07 60.5 100 30.0
SEGI_17863 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 2.8e-07 60.5 102 34.3
TPR.G21113 Trifolium pratense HOM05D000395 ORTHO05D000088 2.8e-07 60.5 247 23.5
TAR381G0348 Trochodendron aralioides HOM05D000823 ORTHO05D000088 2.8e-07 60.5 281 22.1
CsaV3_3G044580 Cucumis sativus L. HOM05D000823 ORTHO05D000088 3.7e-07 60.1 299 23.1
Atru.chr5.2850 Acer truncatum HOM05D000395 ORTHO05D000088 4.8e-07 59.7 297 23.6
Aqoxy6G00935 Aquilegia oxysepala HOM05D000823 ORTHO05D000088 4.8e-07 59.7 240 22.1
Dinv36014 Davidia involucrata HOM05D000888 ORTHO05D000740 4.8e-07 59.7 255 22.7
FAN06G1437 Fragaria x ananassa HOM05D000823 ORTHO05D000088 4.8e-07 59.7 269 21.9
PSO170G0378 Papaver somniferum HOM05D000823 ORTHO05D000088 4.8e-07 59.7 267 22.8
QL01p024175 Quercus lobata HOM05D000395 ORTHO05D000088 4.8e-07 59.7 291 21.0
SGA_v2.0_scaffold15G07220 Striga asiatica HOM05D000806 ORTHO05D002324 4.8e-07 59.7 287 25.1
FvH4_2g06970 Fragaria vesca HOM05D000823 ORTHO05D000088 6.3e-07 59.3 274 22.6
FvH4_7g01780 Fragaria vesca HOM05D000823 ORTHO05D000088 6.3e-07 59.3 269 21.9
PSO170G0660 Papaver somniferum HOM05D000823 ORTHO05D000088 6.3e-07 59.3 110 28.2
Psat3g152560 Pisum sativum HOM05D000395 ORTHO05D000088 6.3e-07 59.3 235 25.5
Sed0013260 Sechium edule HOM05D000395 ORTHO05D000088 6.3e-07 59.3 270 24.1
QL08p007747 Quercus lobata HOM05D000395 ORTHO05D000088 8.2e-07 58.9 283 23.0
QL09p000211 Quercus lobata HOM05D000395 ORTHO05D000088 8.2e-07 58.9 284 23.2
vmacro04665 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 8.2e-07 58.9 105 28.6
COL.COLO4_11318 Corchorus olitorius HOM05D056455 ORTHO05D000088 1.1e-06 58.5 259 23.2
MELO3C007521.2 Cucumis melo HOM05D000823 ORTHO05D000088 1.1e-06 58.5 278 18.7
FAN15G3650 Fragaria x ananassa HOM05D000823 ORTHO05D000088 1.1e-06 58.5 260 22.7
Lj2C600T9 Lonicera japonica HOM05D000395 ORTHO05D000088 1.1e-06 58.5 104 28.8
MBI16_g31478_MAGBIO Magnolia biondii HOM05D000823 ORTHO05D000088 1.1e-06 58.5 244 24.6
Peaxi162Scf01198g00214 Petunia axillaris HOM05D009106 ORTHO05D010235 1.1e-06 58.5 270 22.2
QL07p047587 Quercus lobata HOM05D000395 ORTHO05D000088 1.1e-06 58.5 284 22.5
Rhsim02G0167600 Rhododendron simsii HOM05D000395 ORTHO05D000088 1.1e-06 58.5 76 35.5
Thecc.01G046600 Theobroma cacao HOM05D000823 ORTHO05D000088 1.1e-06 58.5 98 27.6
TPR.G10176 Trifolium pratense HOM05D000395 ORTHO05D000088 1.1e-06 58.5 230 21.7
Dinv42109 Davidia involucrata HOM05D008110 ORTHO05D000088 1.4e-06 58.2 105 29.5
Nitab4.5_0000380g0010 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.4e-06 58.2 228 24.1
QL05p061698 Quercus lobata HOM05D000395 ORTHO05D000088 1.4e-06 58.2 291 21.0
Hund06613 Selenicereus undatus HOM05D000823 ORTHO05D000088 1.4e-06 58.2 110 30.0
CiPaw.06G020200 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.8e-06 57.8 301 22.9
Psat3g152520 Pisum sativum HOM05D000395 ORTHO05D000088 2.4e-06 57.4 267 23.6
Prupe.4G178300 Prunus persica HOM05D000823 ORTHO05D000088 2.4e-06 57.4 276 19.6
HanXRQChr08g0233321 Helianthus annuus HOM05D026026 ORTHO05D227145 3.1e-06 57.0 288 23.6
QL08p005702 Quercus lobata HOM05D000395 ORTHO05D000088 3.1e-06 57.0 234 22.2
QL08p006039 Quercus lobata HOM05D000395 ORTHO05D000088 3.1e-06 57.0 234 22.2
QL08p030552 Quercus lobata HOM05D000395 ORTHO05D000088 3.1e-06 57.0 283 22.3
SEGI_02416 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 3.1e-06 57.0 98 33.7
Aa31LG5G11590 Aethionema arabicum HOM05D006628 ORTHO05D000088 4.1e-06 56.6 77 33.8
QL04p064277 Quercus lobata HOM05D000395 ORTHO05D000088 4.1e-06 56.6 291 20.6
FvH4_2g07290 Fragaria vesca HOM05D000823 ORTHO05D000088 5.3e-06 56.2 106 29.2
Lj2A600G55 Lonicera japonica HOM05D000395 ORTHO05D000088 5.3e-06 56.2 271 23.2
Lj1g0010041 Lotus japonicus HOM05D000395 ORTHO05D000088 5.3e-06 56.2 273 22.7
SEGI_02633 Sequoiadendron giganteum HOM05D000823 ORTHO05D000088 5.3e-06 56.2 99 32.3
PGSC0003DMG400005893 Solanum tuberosum HOM05D000823 ORTHO05D000088 5.3e-06 56.2 221 27.6
Migut.D01639 Erythranthe guttata HOM05D000888 ORTHO05D000740 6.9e-06 55.8 249 23.3
FAN19G1451 Fragaria x ananassa HOM05D000823 ORTHO05D000088 6.9e-06 55.8 106 29.2
Os03g0621650 Oryza sativa ssp. japonica HOM05D000823 ORTHO05D000088 6.9e-06 55.8 100 29.0
PSO541G4018 Papaver somniferum HOM05D000395 ORTHO05D019683 6.9e-06 55.8 104 30.8
Prupe.3G083400 Prunus persica HOM05D000395 ORTHO05D000088 6.9e-06 55.8 131 29.8
Prupe.4G178000 Prunus persica HOM05D000823 ORTHO05D000088 6.9e-06 55.8 55 41.8
Duzib187G0271 Durio zibethinus HOM05D000823 ORTHO05D000088 9.0e-06 55.5 98 27.6
Thhalv10015617m.g Eutrema salsugineum HOM05D007600 ORTHO05D009132 9.0e-06 55.5 237 22.8
Prupe.4G178100 Prunus persica HOM05D000823 ORTHO05D000088 9.0e-06 55.5 273 23.8


User provided reference genes

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