Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 0.0e+00 1861.3 942 100.0
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 0.0e+00 1148.3 1019 65.4
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 1.6e-289 999.6 1043 59.9
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 9.8e-210 734.6 1102 45.9
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.1e-189 667.9 1098 43.2
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 5.6e-189 665.6 1098 43.1
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 8.1e-188 661.8 1116 42.1
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 1.2e-183 647.9 1080 42.5
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 2.1e-183 647.1 1109 42.3
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 6.0e-183 645.6 1107 41.8
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 1.1e-179 634.8 1076 44.1
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.4e-179 634.4 1053 43.0
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 2.3e-179 633.6 1117 42.3
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.0e-178 630.6 1091 42.3
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 4.4e-178 629.4 1115 42.2
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 2.9e-177 626.7 1099 43.2
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.9e-177 626.7 1067 42.9
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.8e-177 626.3 1115 42.2
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 8.4e-177 625.2 1115 42.1
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 8.4e-177 625.2 1115 42.1
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.2e-175 621.3 1117 42.0
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 1.0e-174 618.2 1086 41.3
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.7e-174 617.5 1115 41.5
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 6.6e-174 615.5 1091 41.5
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 2.1e-172 610.5 1077 41.3
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 3.6e-172 609.8 1126 40.1
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 2.9e-169 600.1 1078 41.5
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 3.8e-169 599.7 1088 40.6
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 8.4e-169 598.6 1097 40.7
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 1.2e-167 594.7 1081 41.0
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 1.6e-167 594.3 1084 41.1
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 6.6e-166 589.0 1128 40.2
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 5.6e-165 585.9 1050 42.4
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 2.1e-164 583.9 1083 40.7
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 4.0e-163 579.7 1104 40.9
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.0e-162 577.4 1043 41.8
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.7e-161 574.3 1074 41.0
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 8.4e-161 572.0 1079 38.8
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.1e-160 571.6 1065 40.5
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 4.2e-160 569.7 1058 40.2
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 7.1e-160 568.9 1027 41.9
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 1.2e-159 568.2 974 42.4
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 1.3e-158 564.7 1078 39.8
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 8.7e-158 562.0 1097 40.1
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 2.5e-157 560.5 1081 40.3
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 2.5e-157 560.5 1092 39.8
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 1.3e-156 558.1 1074 41.3
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 9.0e-155 552.0 1094 40.0
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 2.6e-154 550.4 1098 39.3
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 4.5e-154 549.7 1093 40.0
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 1.3e-153 548.1 1023 41.4
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 4.9e-153 546.2 1076 39.4
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 6.4e-153 545.8 1081 40.1
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 6.4e-153 545.8 1071 38.9
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.9e-152 544.3 1067 39.3
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 2.4e-152 543.9 1066 38.9
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 5.5e-152 542.7 1118 38.5
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 7.1e-152 542.3 1099 38.9
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 1.2e-151 541.6 1076 37.8
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 1.2e-151 541.6 1048 38.9
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 2.7e-151 540.4 1069 39.8
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 3.5e-151 540.0 1061 39.8
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 6.0e-151 539.3 1074 39.5
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 2.3e-150 537.3 1197 36.8
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 3.9e-150 536.6 1048 39.3
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 8.7e-150 535.4 1095 38.3
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 1.5e-149 534.6 1125 37.9
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 4.3e-149 533.1 1070 39.4
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 7.4e-149 532.3 1053 38.8
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.4e-147 527.3 1037 38.6
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 2.4e-147 527.3 1055 38.7
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 5.8e-146 522.7 1057 38.8
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 7.6e-146 522.3 1079 39.4
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 1.3e-145 521.5 1076 38.6
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 2.9e-145 520.4 1022 37.9
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 4.9e-145 519.6 1052 38.0
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 1.4e-144 518.1 1046 37.9
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 9.3e-144 515.4 1080 38.6
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 1.6e-143 514.6 1073 38.4
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 6.0e-143 512.7 1077 39.1
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.0e-142 511.9 1044 38.9
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 5.1e-142 509.6 1071 37.7
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 5.7e-141 506.1 1082 38.4
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 7.4e-141 505.8 1026 39.2
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 2.8e-140 503.8 1066 37.9
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 1.1e-139 501.9 1078 38.4
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 3.1e-139 500.4 1017 38.5
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 1.2e-138 498.4 1068 37.5
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 2.0e-138 497.7 1051 37.9
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 4.5e-138 496.5 999 39.2
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 1.3e-137 495.0 1045 37.9
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 1.0e-134 485.3 1045 37.2
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 2.2e-132 477.6 1085 36.1
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 2.4e-131 474.2 1059 36.4
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 9.1e-131 472.2 1027 37.5
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 2.5e-128 464.2 1079 35.7
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 2.5e-128 464.2 1100 36.1
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 3.2e-128 463.8 1154 35.4
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 3.6e-127 460.3 1071 35.1
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 3.6e-127 460.3 1094 36.0
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 2.3e-126 457.6 930 38.6
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 1.1e-125 455.3 1084 35.5
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.6e-125 454.1 1014 37.0
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 3.7e-124 450.3 1020 35.9
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 6.9e-123 446.0 1006 36.3
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.8e-116 424.1 1047 36.4
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.7e-111 407.5 1036 34.9
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 8.0e-111 406.0 819 39.8
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 1.4e-110 405.2 1057 35.6
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 1.4e-110 405.2 1041 35.6
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 1.8e-110 404.8 1048 36.0
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 1.5e-109 401.7 990 35.9
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.7e-108 398.3 1013 36.3
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 6.3e-108 396.4 1028 34.2
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 8.5e-105 386.0 1040 34.6
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 1.5e-104 385.2 1041 34.4
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 7.2e-104 382.9 1019 35.9
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 1.6e-103 381.7 1065 33.8
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 1.0e-102 379.0 1002 35.3
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.4e-102 378.6 994 34.9
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 4.4e-101 373.6 896 36.5
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 9.8e-101 372.5 1039 34.3
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 2.2e-100 371.3 1015 35.1
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 6.3e-100 369.8 993 35.1
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 1.8e-99 368.2 1015 34.9
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 4.1e-99 367.1 1079 33.2
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.5e-98 364.0 1008 33.0
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.3e-97 362.1 1081 33.1
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.9e-96 358.2 1017 34.8
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 1.2e-93 349.0 1010 34.8
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.0e-93 348.2 1010 34.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 2.0e-93 348.2 1010 34.8
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 7.5e-93 346.3 1005 32.9
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 5.0e-89 333.6 526 44.7
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 5.4e-83 313.5 1006 32.4
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 1.6e-79 302.0 1060 30.6
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 5.2e-78 297.0 983 31.7
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.9e-76 291.2 991 31.1
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 4.1e-75 287.3 548 39.8
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 1.2e-69 269.2 634 36.4
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 3.5e-66 257.7 477 40.0
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 4.1e-59 234.2 592 34.3
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 1.5e-56 225.7 505 39.0
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 1.9e-51 208.8 233 52.8
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 9.3e-51 206.5 512 34.0
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 5.8e-45 187.2 255 47.1
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 4.3e-40 171.0 937 25.5
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.4e-38 166.0 192 57.8
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 1.2e-34 152.9 821 26.2
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 2.8e-31 141.7 577 29.3
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 5.3e-30 137.5 974 25.3
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 2.2e-28 132.1 451 28.4
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.1e-27 129.8 483 30.6
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 1.9e-27 129.0 971 25.4
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 1.6e-26 125.9 195 44.1
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 6.7e-25 120.6 833 25.7
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 1.1e-24 119.8 310 33.2
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 2.5e-24 118.6 192 43.8
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 3.1e-22 111.7 946 25.2
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 1.0e-20 106.7 900 24.3
Hma1.2p1_0623F.1_g191005 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.7e-20 105.9 133 48.1
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 2.9e-20 105.1 299 35.5
Dinv32513 Davidia involucrata HOM05D003611 ORTHO05D004281 1.9e-19 102.4 82 63.4
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 7.2e-19 100.5 242 36.8
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 1.6e-18 99.4 213 39.0
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 1.6e-18 99.4 297 33.7
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 2.7e-18 98.6 251 36.3
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 6.7e-17 94.0 294 32.3
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 2.5e-16 92.0 218 37.2
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 2.2e-15 89.0 253 35.2
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 8.2e-15 87.0 268 31.7
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 9.1e-14 83.6 168 41.1
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.2e-12 79.0 228 32.5
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 3.8e-12 78.2 258 30.6
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 8.5e-12 77.0 313 31.0
Duzib268G1133 Durio zibethinus HOM05D003611 ORTHO05D004281 2.7e-10 72.0 127 40.9
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 1.4e-09 69.7 276 30.4
SMO137G0129 Selaginella moellendorffii HOM05D024364 ORTHO05D021332 3.0e-09 68.6 693 25.0
HPP92_002605 Vanilla planifolia HOM05D046274 ORTHO05D004281 2.6e-08 65.5 391 26.3
MD01G1208800 Malus domestica HOM05D010729 ORTHO05D011897 1.7e-07 62.8 260 28.1
Oeu054339.1 Olea europaea HOM05D003611 ORTHO05D004281 4.8e-07 61.2 55 54.5
BcaC03g16054 Brassica carinata HOM05D003611 ORTHO05D004281 8.2e-07 60.5 66 50.0
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 1.8e-06 59.3 244 26.6


User provided reference genes

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