Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 8.0e-101 370.5 204 100.0
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.1e-81 307.0 207 81.6
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 2.1e-80 302.8 205 78.5
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 6.2e-77 291.2 205 76.6
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.1e-60 237.3 154 77.9
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.2e-59 233.8 154 76.0
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 1.5e-59 233.4 159 76.7
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 3.8e-58 228.8 158 74.7
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 6.4e-58 228.0 155 75.5
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 8.4e-58 227.6 158 74.7
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 8.4e-58 227.6 158 74.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 1.4e-57 226.9 152 74.3
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.9e-57 226.5 158 74.7
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 2.4e-57 226.1 152 74.3
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 3.2e-57 225.7 155 76.8
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 4.2e-57 225.3 151 76.2
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 7.1e-57 224.6 158 74.7
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 1.2e-56 223.8 150 76.7
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 4.6e-56 221.9 149 76.5
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 7.9e-56 221.1 155 73.5
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 7.9e-56 221.1 149 74.5
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.0e-55 220.7 155 73.5
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 1.3e-55 220.3 151 74.8
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.3e-55 220.3 151 74.8
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 2.3e-55 219.5 149 74.5
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.3e-55 219.5 141 78.0
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 3.0e-55 219.2 153 73.2
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.1e-54 217.2 151 73.5
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 1.5e-54 216.9 158 70.3
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 2.5e-54 216.1 151 72.8
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 3.3e-54 215.7 152 72.4
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 3.3e-54 215.7 154 71.4
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 3.3e-54 215.7 152 72.4
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 4.3e-54 215.3 152 71.1
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 4.3e-54 215.3 152 71.1
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 1.3e-53 213.8 153 70.6
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.6e-53 213.4 154 70.1
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.6e-53 213.4 152 69.1
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.6e-53 213.4 152 71.1
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 1.6e-53 213.4 158 70.9
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 3.7e-53 212.2 146 75.3
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 4.8e-53 211.8 136 78.7
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 4.8e-53 211.8 154 68.8
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 6.2e-53 211.5 142 78.2
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 6.2e-53 211.5 140 73.6
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 8.1e-53 211.1 158 70.9
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 1.4e-52 210.3 154 70.8
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.8e-52 209.9 142 77.5
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.8e-52 209.9 142 77.5
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 2.4e-52 209.5 149 71.1
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.4e-52 209.5 149 71.1
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 4.0e-52 208.8 151 70.9
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 5.3e-52 208.4 154 70.1
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 5.3e-52 208.4 158 67.1
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 5.3e-52 208.4 149 73.2
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 6.9e-52 208.0 155 69.0
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 9.0e-52 207.6 136 75.0
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 9.0e-52 207.6 149 72.5
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 1.5e-51 206.8 143 73.4
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.6e-51 206.1 158 69.0
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.6e-51 206.1 142 76.1
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 5.8e-51 204.9 151 70.2
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 7.6e-51 204.5 151 69.5
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.0e-50 204.1 180 62.8
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 1.3e-50 203.8 151 70.2
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 2.2e-50 203.0 155 70.3
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 2.2e-50 203.0 138 77.5
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 2.2e-50 203.0 160 66.9
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.9e-50 202.6 121 83.5
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 6.5e-50 201.4 152 67.8
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 8.4e-50 201.1 135 77.8
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 1.1e-49 200.7 145 69.7
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 5.5e-49 198.4 145 69.7
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 9.3e-49 197.6 138 73.9
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 9.3e-49 197.6 131 76.3
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.6e-48 196.8 145 69.0
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 3.5e-48 195.7 151 72.2
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 4.6e-48 195.3 148 66.9
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 7.9e-48 194.5 145 67.6
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.0e-47 194.1 148 66.2
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-47 193.7 145 67.6
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 1.3e-47 193.7 182 59.9
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 2.3e-47 193.0 160 64.4
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 3.9e-47 192.2 148 67.6
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.5e-46 189.5 150 64.7
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 5.7e-46 188.3 143 69.2
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 7.4e-46 188.0 159 62.9
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 9.6e-46 187.6 165 63.0
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 2.1e-45 186.4 122 75.4
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 2.8e-45 186.0 149 67.1
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 4.8e-45 185.3 149 67.1
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 4.8e-45 185.3 149 67.1
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.4e-44 183.7 140 67.1
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 2.4e-44 183.0 149 65.8
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 5.3e-44 181.8 176 56.8
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 9.0e-44 181.0 143 66.4
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 2.6e-43 179.5 137 67.2
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 4.5e-43 178.7 111 82.9
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 5.9e-43 178.3 143 65.7
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 5.9e-43 178.3 143 65.7
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 1.0e-42 177.6 136 66.9
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.2e-42 176.4 140 64.3
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 2.2e-42 176.4 152 61.2
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 5.0e-42 175.3 136 66.2
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 6.5e-42 174.9 138 65.2
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 4.2e-41 172.2 148 62.2
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 7.2e-41 171.4 108 82.4
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.0e-39 167.5 126 69.8
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 3.0e-39 166.0 108 79.6
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 3.9e-39 165.6 120 69.2
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 6.7e-39 164.9 126 69.0
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 1.1e-38 164.1 99 77.8
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 2.2e-37 159.8 157 56.1
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 1.4e-36 157.1 110 73.6
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 1.4e-36 157.1 99 77.8
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 1.4e-33 147.1 129 62.0
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 2.5e-33 146.4 115 65.2
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 4.2e-33 145.6 101 76.2
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 4.6e-32 142.1 109 64.2
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 7.9e-32 141.4 119 60.5
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 6.7e-31 138.3 99 69.7
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 3.7e-29 132.5 113 53.1
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 2.0e-27 126.7 85 77.6
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 1.4e-25 120.6 77 76.6
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 3.9e-23 112.5 74 79.7
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 7.0e-20 101.7 144 46.5
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.5e-17 94.0 155 38.7
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 2.7e-16 89.7 100 51.0
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 2.7e-16 89.7 116 46.6
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 8.0e-16 88.2 130 38.5
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 1.2e-14 84.3 97 53.6
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 2.8e-13 79.7 50 74.0
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 2.4e-12 76.6 50 70.0
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 2.7e-11 73.2 47 76.6
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 1.6e-08 63.9 48 66.7
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 1.6e-08 63.9 48 66.7
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 2.0e-06 57.0 39 79.5


User provided reference genes

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