Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 0.0e+00 1402.1 730 100.0
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 0.0e+00 1260.4 730 88.5
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 0.0e+00 1238.8 730 87.4
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 0.0e+00 1200.7 730 84.1
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.0e-312 1074.7 722 75.3
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 7.4e-306 1053.5 707 76.1
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.9e-301 1038.9 723 73.2
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.2e-300 1036.2 747 71.9
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 7.9e-300 1033.5 725 72.4
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.1e-296 1021.5 760 69.7
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 6.9e-296 1020.4 731 71.1
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.1e-293 1013.1 706 73.1
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.4e-293 1012.7 723 70.0
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 1.2e-292 1009.6 706 72.1
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 734 71.1
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.3e-291 1006.1 704 72.0
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 2.5e-290 1001.9 724 70.2
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 2.8e-289 998.4 704 71.6
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.5e-287 992.6 701 71.3
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.7e-287 990.3 717 70.9
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 2.2e-286 988.8 706 70.7
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 6.5e-286 987.3 799 65.5
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.5e-285 985.3 706 71.0
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.5e-282 976.1 723 69.6
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.6e-282 975.3 724 69.8
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.3e-281 973.0 705 70.9
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 2.2e-281 972.2 702 70.2
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.7e-281 971.5 720 70.1
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-280 969.9 706 69.4
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.4e-280 969.5 729 69.3
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.1e-280 968.4 713 70.3
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.3e-280 967.6 706 69.5
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.3e-280 967.6 706 69.4
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.5e-279 966.1 706 69.7
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 7.7e-279 963.8 708 69.4
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.2e-278 962.2 724 69.1
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.8e-278 961.4 704 69.7
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.8e-278 961.4 709 69.1
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.2e-276 956.4 708 69.5
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.7e-276 955.3 724 67.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 1.0e-275 953.4 724 68.0
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.3e-275 952.2 709 68.1
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 5.7e-274 947.6 716 67.7
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.7e-273 946.0 725 67.6
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 8.2e-273 943.7 706 67.8
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.4e-272 943.0 687 70.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.8e-272 942.6 706 68.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.4e-272 942.2 719 66.6
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-271 939.9 735 66.0
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.6e-271 939.5 715 66.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.6e-271 939.5 752 65.6
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 2.6e-271 938.7 727 66.9
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.2e-270 935.6 705 68.8
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 3.8e-270 934.9 727 66.7
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 7.2e-269 930.6 731 66.6
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.6e-268 929.5 731 65.4
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 4.7e-268 927.9 703 67.3
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 6.1e-268 927.5 704 68.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 3.0e-267 925.2 716 66.1
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 5.2e-267 924.5 709 69.0
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.2e-266 923.3 702 67.0
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.5e-266 922.9 672 70.2
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 4.4e-266 921.4 705 66.2
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.7e-266 921.0 722 66.1
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.5e-266 920.6 715 65.6
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.1e-264 916.8 704 66.1
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.4e-264 916.4 703 66.7
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.4e-264 916.4 704 66.1
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.4e-264 916.4 732 64.3
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 5.3e-264 914.4 718 65.0
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 5.3e-264 914.4 724 64.9
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 5.3e-264 914.4 704 65.5
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 7.7e-263 910.6 701 67.3
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.3e-262 909.8 703 67.0
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 3.8e-262 908.3 703 66.1
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.5e-261 906.4 716 65.4
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 5.5e-261 904.4 715 65.5
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.1e-260 902.5 727 64.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 3.6e-260 901.7 718 64.6
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.6e-260 901.7 704 64.9
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.4e-259 899.8 704 64.9
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 5.2e-259 897.9 706 65.4
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 6.8e-259 897.5 685 67.4
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.4e-258 895.2 710 65.4
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.4e-258 894.8 711 64.0
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 4.4e-258 894.8 715 64.8
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 4.8e-257 891.3 707 65.2
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 4.1e-256 888.3 706 65.2
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.2e-255 886.7 709 64.2
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.7e-255 885.6 724 63.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 5.9e-255 884.4 709 65.0
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 7.7e-255 884.0 681 68.6
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.8e-254 881.7 709 64.9
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.8e-254 881.7 708 64.8
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 8.6e-254 880.6 709 64.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.5e-253 879.8 706 64.2
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 3.2e-253 878.6 672 67.9
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 2.8e-252 875.5 706 63.7
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 6.1e-252 874.4 722 63.7
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.5e-250 869.8 708 63.4
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 2.6e-250 869.0 708 64.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.4e-250 868.6 715 62.8
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 5.7e-250 867.8 702 64.5
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 2.8e-249 865.5 726 63.5
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.3e-249 864.4 659 68.3
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.6e-244 849.7 714 62.5
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.6e-244 848.6 736 62.0
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 1.7e-238 829.7 713 60.6
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.6e-238 827.4 734 59.1
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.4e-235 820.1 708 60.3
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 5.8e-234 814.7 615 69.6
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 7.8e-231 804.3 748 59.1
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 3.9e-230 802.0 651 66.7
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.5e-229 799.3 752 58.9
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.5e-226 790.0 704 60.4
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 7.5e-226 787.7 548 72.3
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-221 773.5 556 72.7
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.0e-218 763.1 570 70.4
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.2e-216 755.7 705 56.7
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 5.4e-216 755.0 708 57.1
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.0e-210 736.5 570 68.6
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.1e-208 730.7 708 57.2
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.1e-208 730.7 709 56.6
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.0e-206 722.6 619 62.8
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 3.1e-195 686.0 575 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 6.9e-195 684.9 654 56.6
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.7e-191 672.9 492 68.3
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 3.0e-190 669.5 714 51.0
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 3.5e-183 646.0 729 52.3
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.0e-169 601.3 713 47.7
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.9e-154 548.9 592 53.9
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 8.0e-143 511.9 873 38.6
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.4e-141 506.5 360 69.4
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 6.8e-118 429.1 440 54.8
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.5e-117 427.9 267 79.4
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.1e-115 419.9 263 79.1
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 9.9e-85 318.9 351 51.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.2e-82 312.0 517 38.1
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 6.7e-73 279.6 322 49.4
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 2.6e-53 214.5 553 33.5
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 4.7e-50 203.8 281 44.8
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.3e-49 201.4 230 47.8
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.7e-47 195.3 121 75.2
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 6.3e-39 166.8 122 67.2
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 5.3e-38 163.7 138 62.3
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 4.1e-30 137.5 128 57.8
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 5.3e-30 137.1 323 33.7
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.7e-28 132.1 122 59.0
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.7e-28 132.1 180 43.9
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 6.5e-28 130.2 317 34.1
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 8.0e-26 123.2 303 32.3
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.8e-25 122.1 121 55.4
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 5.2e-25 120.6 177 42.9
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 6.1e-18 97.1 88 56.8
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.5e-16 92.4 85 52.9
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 4.1e-14 84.3 50 74.0
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 2.0e-13 82.0 58 70.7
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-12 78.2 47 70.2
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.9e-12 78.2 47 70.2
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 6.1e-10 70.5 49 67.3
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 8.9e-09 66.6 68 47.1
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.3e-07 62.8 37 75.7


User provided reference genes

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