Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 0.0e+00 1114.4 618 100.0
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 4.2e-177 625.5 649 58.6
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 5.7e-150 535.4 630 53.8
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 3.9e-90 336.7 645 39.2
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.1e-89 335.1 748 37.2
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 2.1e-88 330.9 700 39.3
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.1e-87 328.6 662 38.8
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.4e-87 328.2 768 36.2
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.9e-87 325.9 664 39.3
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 4.5e-86 323.2 714 36.7
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.8e-85 320.1 699 37.8
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 6.7e-82 309.3 680 37.5
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 6.7e-82 309.3 654 37.8
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 8.7e-82 308.9 654 37.5
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.1e-81 308.5 655 37.3
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 3.3e-81 307.0 535 40.6
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.1e-79 302.0 674 36.4
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.5e-78 298.1 675 36.0
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.2e-75 288.5 597 39.0
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.8e-74 284.6 649 37.3
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 6.7e-74 282.7 692 35.5
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.7e-74 282.7 692 35.5
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 8.2e-72 275.8 703 34.7
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.1e-71 275.4 694 34.4
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.4e-71 275.0 712 34.7
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.4e-71 275.0 691 32.9
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 3.1e-71 273.9 718 35.1
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 4.0e-71 273.5 713 33.7
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 6.9e-71 272.7 625 39.2
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 2.6e-70 270.8 718 35.1
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.1e-68 265.4 487 41.5
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.4e-68 265.0 571 39.2
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.5e-68 264.2 700 34.1
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 5.5e-68 263.1 499 39.9
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 9.3e-68 262.3 686 34.3
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.2e-67 261.9 711 32.5
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 2.7e-67 260.8 726 33.6
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.0e-66 258.8 732 33.9
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 1.3e-66 258.5 628 34.2
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 5.1e-66 256.5 625 36.0
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.7e-66 256.1 736 33.2
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.9e-65 254.6 681 35.2
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 4.3e-65 253.4 705 34.6
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 7.4e-65 252.7 653 35.4
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 2.8e-64 250.8 569 35.3
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.8e-64 250.8 693 33.8
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 3.7e-64 250.4 604 34.3
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 4.8e-64 250.0 534 38.4
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 6.3e-64 249.6 691 34.3
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.8e-63 248.1 273 53.1
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 4.1e-63 246.9 514 37.2
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 5.3e-63 246.5 705 32.8
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 9.0e-63 245.7 197 65.0
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 2.0e-62 244.6 764 32.1
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 1.7e-61 241.5 658 35.3
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 3.8e-61 240.4 667 34.5
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 6.5e-61 239.6 534 37.6
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 8.5e-61 239.2 509 36.1
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.9e-60 238.0 604 33.8
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 1.9e-60 238.0 773 31.7
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 4.2e-60 236.9 692 32.8
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.4e-60 235.7 759 32.0
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 2.7e-59 234.2 696 31.8
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.3e-58 231.1 748 29.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 3.0e-58 230.7 660 33.9
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 6.7e-58 229.6 696 33.0
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 6.7e-58 229.6 773 31.3
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.5e-57 228.4 725 31.9
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 3.3e-57 227.3 461 38.6
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 9.7e-57 225.7 700 35.1
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 2.2e-56 224.6 733 30.4
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 9.1e-55 219.2 627 34.8
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 1.2e-54 218.8 337 43.9
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 4.5e-54 216.9 663 32.6
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.0e-53 215.7 721 30.5
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 6.5e-53 213.0 675 31.9
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.4e-52 211.8 711 30.4
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.5e-52 209.9 619 33.3
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 9.4e-52 209.1 692 30.9
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.6e-51 208.4 671 30.8
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.1e-51 208.0 655 31.3
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 3.6e-51 207.2 628 31.8
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 4.7e-51 206.8 638 32.6
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.8e-50 204.9 712 29.6
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 5.1e-50 203.4 239 52.7
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 1.1e-49 202.2 676 30.6
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.3e-49 200.7 216 52.8
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 4.4e-49 200.3 630 32.5
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 5.7e-49 199.9 549 35.7
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 2.2e-48 198.0 693 29.9
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 2.8e-48 197.6 614 31.3
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.4e-47 195.3 624 30.9
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.8e-47 194.9 672 29.3
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 3.1e-47 194.1 661 31.2
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 5.3e-47 193.4 630 32.2
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 5.3e-47 193.4 659 30.8
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 7.0e-47 193.0 789 27.9
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 3.5e-46 190.7 630 31.9
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 5.0e-45 186.8 802 29.1
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 6.5e-45 186.4 522 33.3
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 1.1e-44 185.7 800 28.0
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 5.5e-44 183.3 732 28.1
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 5.5e-44 183.3 709 29.8
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 7.2e-44 183.0 624 30.1
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 7.2e-44 183.0 653 28.9
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 7.2e-44 183.0 587 31.7
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 8.0e-43 179.5 553 32.2
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 5.2e-42 176.8 616 31.8
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.9e-37 161.0 246 43.9
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 4.7e-35 153.7 629 27.7
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.0e-34 152.5 669 29.3
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.7e-32 145.2 237 40.9
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 5.4e-31 140.2 581 28.2
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 4.5e-30 137.1 627 27.1
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.2e-27 129.0 551 27.0
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.4e-26 125.6 500 29.0
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 4.0e-26 124.0 587 28.4
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 5.7e-25 120.2 72 76.4
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 4.5e-22 110.5 372 30.9
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 8.0e-19 99.8 132 44.7
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 8.9e-18 96.3 84 56.0
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 2.4e-15 88.2 115 42.6
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 7.3e-12 76.6 113 41.6
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.0e-10 72.8 39 79.5
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.8e-10 72.0 363 29.2
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 6.8e-10 70.1 99 43.4
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 1.2e-09 69.3 119 37.8
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.2e-09 69.3 410 26.1
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.4e-09 67.4 225 32.9
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.4e-07 61.6 58 55.2
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 2.7e-06 58.2 196 27.6
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 7.8e-06 56.6 58 51.7


User provided reference genes

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