Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.8e-312 1073.2 644 100.0
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.2e-155 554.3 670 59.7
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.9e-148 530.4 693 61.0
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 3.8e-120 436.4 682 46.0
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 3.8e-112 409.8 680 43.7
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.5e-108 397.9 693 47.6
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.2e-102 378.3 692 41.5
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.0e-97 360.9 715 39.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.6e-94 351.3 712 42.4
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.8e-91 340.5 703 39.0
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 4.1e-90 336.7 710 40.1
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.2e-89 335.1 718 39.3
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.5e-89 333.2 726 38.7
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 5.9e-89 332.8 714 37.8
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.5e-87 327.4 738 38.9
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 9.7e-84 315.5 749 37.8
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 4.8e-83 313.2 728 38.2
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.6e-81 307.4 736 38.6
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 3.4e-81 307.0 738 37.0
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 3.4e-81 307.0 695 42.3
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 4.5e-81 306.6 747 36.1
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 5.9e-81 306.2 746 36.7
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.2e-80 304.3 722 42.0
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 3.8e-80 303.5 706 35.7
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 5.0e-80 303.1 725 36.6
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 7.2e-79 299.3 723 36.4
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.6e-78 298.1 763 37.9
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 7.9e-78 295.8 677 42.7
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.8e-77 294.7 746 41.6
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 2.3e-77 294.3 753 35.7
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.0e-77 293.9 724 35.4
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 3.9e-77 293.5 762 34.3
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 5.1e-77 293.1 754 39.5
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 6.7e-77 292.7 763 34.2
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 8.8e-77 292.4 699 37.3
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 5.7e-76 289.7 813 41.0
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 6.3e-75 286.2 714 35.9
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 8.2e-75 285.8 760 36.6
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.4e-74 285.0 735 34.4
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.8e-74 284.6 734 37.7
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.1e-74 283.5 724 39.1
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.1e-74 283.5 721 40.2
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.5e-73 281.6 707 40.6
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.6e-73 280.8 726 38.7
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 3.5e-73 280.4 732 36.6
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 3.5e-73 280.4 738 37.0
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.0e-72 278.9 668 37.7
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.7e-72 278.1 731 39.5
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 1.7e-72 278.1 729 37.2
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.2e-72 277.7 711 41.5
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 6.5e-72 276.2 681 37.0
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 8.5e-72 275.8 745 35.7
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.1e-71 275.4 715 35.7
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 4.2e-71 273.5 704 40.2
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 5.5e-71 273.1 765 41.0
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 7.2e-71 272.7 750 37.6
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.2e-70 271.9 712 41.4
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 2.7e-70 270.8 772 38.9
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.7e-70 270.0 771 34.2
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 4.7e-70 270.0 741 36.0
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.0e-69 267.3 685 36.8
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.0e-69 267.3 735 36.2
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 6.7e-69 266.2 660 37.3
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.1e-68 265.4 716 37.2
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.0e-68 264.6 676 39.1
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 2.0e-68 264.6 737 35.8
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 3.3e-68 263.8 702 34.3
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.2e-67 261.2 743 35.1
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 3.7e-67 260.4 727 36.7
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 4.8e-67 260.0 715 35.9
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.1e-66 258.8 741 35.9
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.4e-66 258.5 731 33.4
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 1.4e-66 258.5 750 39.1
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.4e-66 257.7 729 35.4
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.1e-66 257.3 731 35.2
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 3.1e-66 257.3 704 35.5
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.3e-64 251.9 664 38.4
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.5e-63 248.4 769 34.2
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 7.2e-63 246.1 712 35.1
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 9.4e-63 245.7 651 36.3
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.6e-62 245.0 680 34.4
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.7e-62 244.2 724 35.6
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 3.6e-62 243.8 666 44.6
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 1.0e-61 242.3 673 34.0
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 2.3e-61 241.1 703 34.4
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.0e-61 240.7 709 36.8
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 3.0e-61 240.7 716 36.7
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.2e-60 238.8 693 35.6
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 4.4e-60 236.9 699 35.3
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 9.8e-60 235.7 734 37.1
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 4.8e-59 233.4 701 35.1
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 6.3e-59 233.0 700 35.3
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 1.1e-58 232.3 688 33.4
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.4e-58 231.9 596 35.2
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 2.0e-57 228.0 772 36.4
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.0e-57 228.0 718 34.7
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 5.9e-57 226.5 593 45.7
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.3e-56 225.3 737 36.9
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.3e-56 225.3 729 37.0
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 5.0e-56 223.4 710 35.2
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 6.5e-56 223.0 721 34.8
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 6.5e-56 223.0 654 37.9
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 5.5e-55 219.9 797 34.4
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.4e-53 215.3 673 31.9
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 6.8e-53 213.0 762 29.9
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.3e-51 208.8 643 33.4
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 2.8e-51 207.6 646 33.7
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 3.1e-50 204.1 743 33.0
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 5.4e-50 203.4 699 35.1
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.7e-49 201.1 668 31.7
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 5.9e-49 199.9 757 29.9
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.5e-47 195.3 754 36.6
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 5.5e-47 193.4 695 38.4
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.7e-46 190.3 744 35.8
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.0e-45 189.1 733 29.9
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.2e-45 186.8 611 31.9
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 8.9e-45 186.0 803 30.4
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 8.9e-45 186.0 746 28.3
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.5e-44 185.3 746 32.8
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 2.0e-44 184.9 553 32.2
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 5.7e-44 183.3 702 31.5
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 1.3e-43 182.2 677 31.3
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 8.3e-43 179.5 216 51.4
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.5e-41 174.1 618 31.6
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.9e-40 171.0 618 30.7
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 6.6e-40 169.9 762 27.4
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 3.6e-38 164.1 623 31.5
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.8e-37 161.8 635 29.9
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 3.1e-37 161.0 622 31.2
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.0e-37 160.6 740 29.6
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 6.8e-37 159.8 623 31.1
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 2.0e-36 158.3 673 30.3
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 7.5e-36 156.4 221 51.1
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 7.0e-34 149.8 634 35.0
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 2.7e-33 147.9 255 45.1
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 1.0e-32 146.0 705 29.5
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.0e-32 146.0 660 29.5
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.5e-31 142.1 700 29.3
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.5e-31 142.1 700 29.3
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.3e-31 141.0 695 28.2
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 3.3e-31 141.0 224 45.1
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 2.8e-30 137.9 716 29.2
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.1e-29 136.0 169 46.7
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.8e-29 135.2 234 45.7
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 4.0e-29 134.0 236 40.3
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 2.6e-28 131.3 715 29.2
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 8.3e-27 126.3 808 25.5
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.4e-26 124.8 572 27.1
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.6e-25 120.6 447 30.4
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.7e-24 118.6 667 27.1
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.9e-24 117.5 327 32.1
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 5.1e-24 117.1 802 24.8
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.5e-23 114.8 206 38.8
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.3e-23 114.4 146 49.3
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.2e-22 112.5 417 32.9
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.6e-22 112.1 326 31.3
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 3.6e-22 110.9 833 29.1
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 2.3e-21 108.2 200 42.5
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 4.1e-18 97.4 153 43.1
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.1e-15 89.4 106 55.7
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 9.6e-15 86.3 169 38.5
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.1e-14 85.1 473 28.8
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 6.8e-13 80.1 656 24.2
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.5e-12 79.0 130 43.1
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.6e-12 78.2 257 27.6
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 3.8e-11 74.3 166 41.6
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.9e-10 72.0 74 60.8
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.6e-09 68.9 381 24.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.0e-09 67.0 302 28.5
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 4.3e-07 60.8 95 45.3
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.1e-06 58.5 283 25.8
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 2.8e-06 58.2 86 45.3
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.8e-06 58.2 289 23.9
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 4.8e-06 57.4 289 23.9
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 4.8e-06 57.4 283 24.0


User provided reference genes

Program Settings