Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.2e-277 959.1 470 100.0
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 3.9e-215 751.5 484 76.9
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 2.1e-208 729.2 483 74.5
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.6e-189 665.2 482 68.9
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 7.1e-185 651.0 484 66.7
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.5e-184 648.7 482 67.8
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.0e-183 647.1 489 67.9
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.3e-183 646.0 484 67.1
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 5.1e-183 644.8 481 67.8
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 5.1e-183 644.8 485 67.4
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.3e-182 641.7 484 68.0
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 9.6e-182 640.6 482 65.1
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.8e-181 638.3 485 65.8
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 4.0e-180 635.2 482 65.1
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 5.3e-180 634.8 483 64.8
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 6.9e-180 634.4 481 65.1
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.2e-179 633.6 484 64.7
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.5e-179 633.3 481 66.5
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.5e-179 633.3 482 64.3
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 7.6e-179 630.9 483 64.6
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.7e-178 629.8 479 64.1
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 2.2e-178 629.4 481 64.4
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 3.8e-178 628.6 482 64.5
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.9e-178 628.2 487 64.3
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.4e-177 625.9 484 64.7
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 7.1e-177 624.4 483 64.0
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 7.1e-177 624.4 485 66.4
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.0e-175 620.5 482 66.4
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 1.3e-175 620.2 482 64.7
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 1.3e-175 620.2 482 64.7
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.0e-175 619.0 484 63.8
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.7e-175 617.8 482 66.4
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.1e-174 617.1 485 64.1
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 5.6e-174 614.8 486 63.4
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 9.6e-174 614.0 484 63.6
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.6e-173 613.2 483 61.9
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.6e-173 613.2 482 63.5
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 8.1e-173 610.9 486 62.6
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.4e-172 609.4 485 62.9
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.0e-172 608.6 485 63.3
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 4.0e-172 608.6 485 63.3
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 4.0e-172 608.6 485 62.3
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 9.0e-172 607.4 471 63.3
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.2e-171 607.1 482 63.5
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.0e-171 606.3 484 63.0
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 2.0e-171 606.3 505 61.0
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.5e-171 605.1 485 63.1
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.3e-170 603.6 481 63.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.7e-170 603.2 480 61.5
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.7e-170 603.2 481 62.8
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.2e-170 602.8 482 61.8
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 3.8e-170 602.1 485 62.5
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.6e-168 596.7 524 58.8
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.6e-168 596.7 524 58.8
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 2.7e-168 595.9 480 61.0
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.7e-168 595.9 504 62.9
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 4.6e-168 595.1 525 58.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.0e-168 594.7 521 61.0
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 6.0e-168 594.7 527 58.3
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 7.9e-168 594.3 398 73.6
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.0e-167 592.4 479 60.1
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.9e-167 592.0 482 62.4
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.1e-167 591.7 524 59.0
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.5e-166 590.1 478 62.8
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.9e-166 589.7 528 58.3
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 2.5e-166 589.3 507 60.7
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.3e-166 589.0 484 61.0
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.3e-166 589.0 519 60.9
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 5.6e-166 588.2 534 57.7
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.6e-165 586.6 486 61.3
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.8e-165 585.9 486 60.7
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.1e-164 583.9 483 62.5
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.1e-164 582.4 487 60.2
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 5.8e-163 578.2 488 62.1
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 2.2e-162 576.2 492 58.9
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 6.5e-162 574.7 472 60.6
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 6.5e-162 574.7 491 62.3
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 8.4e-162 574.3 481 59.7
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.2e-161 572.4 488 61.5
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 7.1e-161 571.2 484 59.9
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 2.1e-160 569.7 481 59.5
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.3e-159 567.0 549 54.1
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 5.1e-159 565.1 486 59.3
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 5.1e-159 565.1 489 57.9
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.7e-159 564.7 440 63.4
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 8.7e-159 564.3 483 59.2
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 9.7e-158 560.8 480 59.2
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 9.7e-158 560.8 485 58.8
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 4.1e-156 555.4 486 58.4
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.5e-155 553.5 483 59.6
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.0e-155 553.1 481 58.6
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 2.6e-155 552.7 485 58.6
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 4.5e-155 552.0 479 57.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.0e-154 548.5 486 58.6
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.9e-153 546.6 544 53.9
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 3.2e-153 545.8 486 58.2
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 5.5e-153 545.0 489 56.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 9.4e-153 544.3 483 58.0
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.1e-152 543.1 443 62.3
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 2.7e-152 542.7 483 57.8
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 2.7e-152 542.7 483 57.8
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 3.6e-152 542.3 483 57.8
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.8e-151 540.0 482 58.9
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 6.7e-151 538.1 473 56.7
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 2.5e-150 536.2 475 56.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 9.7e-150 534.3 477 56.4
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.7e-149 533.5 473 58.4
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 4.8e-149 531.9 486 55.6
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.8e-149 531.9 441 61.2
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 6.3e-149 531.6 442 61.1
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.1e-145 520.8 396 66.4
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 9.7e-142 507.7 399 64.2
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.8e-141 506.1 493 54.8
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 9.1e-140 501.1 395 64.6
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.5e-139 500.4 394 62.7
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 2.2e-138 496.5 291 79.0
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 6.5e-138 495.0 402 63.7
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.1e-136 490.0 497 51.3
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 9.1e-132 474.6 506 50.8
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 5.9e-131 471.9 283 77.0
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.3e-130 470.7 443 57.1
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 4.7e-128 462.2 287 74.6
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.2e-127 458.8 456 53.3
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 8.8e-127 458.0 479 50.1
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 8.8e-127 458.0 400 56.0
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.5e-126 457.2 443 56.0
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 9.7e-126 454.5 443 54.6
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 8.3e-125 451.4 360 63.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.1e-124 449.1 513 46.4
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 5.0e-122 442.2 305 66.2
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.6e-118 429.9 413 56.9
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 4.8e-117 425.6 461 51.2
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.4e-116 423.3 302 64.2
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 8.0e-112 408.3 287 64.8
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.9e-106 389.4 285 64.2
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 6.6e-106 388.7 290 63.8
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.9e-105 387.1 346 55.2
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.5e-97 360.9 303 57.8
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 2.2e-93 347.1 391 45.5
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 7.8e-91 338.6 418 45.0
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 2.4e-84 317.0 297 54.2
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 3.2e-76 290.0 378 45.2
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.2e-68 263.1 305 51.1
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.5e-62 244.6 184 64.7
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.4e-60 238.0 205 57.1
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.5e-49 200.7 179 57.5
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.7e-37 161.4 195 47.7
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.5e-37 159.1 95 76.8
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.2e-36 156.8 93 77.4
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.1e-35 152.9 96 72.9
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 8.8e-34 149.1 127 51.2
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-32 145.2 144 50.7
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-32 145.2 144 50.7
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 5.0e-29 133.3 86 67.4
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 5.0e-29 133.3 86 67.4
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 8.5e-29 132.5 156 50.6
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.2e-27 128.6 195 41.0
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.4e-25 120.2 143 49.7
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 4.4e-25 120.2 166 41.6
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.4e-23 114.4 165 43.6
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 8.5e-21 105.9 113 50.4
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 5.2e-18 96.7 141 41.1
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.3e-17 94.0 174 36.8
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 7.0e-15 86.3 45 84.4
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 6.8e-10 69.7 145 33.8
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 6.3e-08 63.2 58 55.2


User provided reference genes

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