Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 0.0e+00 1808.1 1024 100.0
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 0.0e+00 1291.2 971 75.4
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 0.0e+00 1267.3 1002 74.0
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1129.4 990 65.1
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 0.0e+00 1125.5 990 64.9
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1085.1 1002 63.1
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1083.9 1019 63.5
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 4.9e-311 1071.2 1013 61.7
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 2.4e-310 1068.9 1025 60.8
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 2.5e-307 1058.9 1029 59.6
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 7.2e-307 1057.4 1020 61.9
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 1.6e-306 1056.2 1039 59.4
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.6e-306 1056.2 1012 62.4
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 6.1e-306 1054.3 997 62.4
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 2.3e-305 1052.4 1026 59.1
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 1.1e-304 1050.0 1009 59.9
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 5.7e-304 1047.7 1010 62.3
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 6.3e-303 1044.3 979 60.3
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 1.0e-300 1036.9 1015 58.6
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 2.9e-300 1035.4 1004 59.2
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 9.4e-299 1030.4 1010 61.2
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 6.1e-298 1027.7 1010 62.5
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 1.8e-297 1026.2 1030 61.7
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 6.7e-297 1024.2 996 59.5
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.1e-296 1023.5 1010 59.8
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 4.4e-296 1021.5 1025 59.8
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 2.2e-295 1019.2 1008 62.6
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 2.8e-295 1018.8 1007 58.9
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 3.7e-295 1018.5 1021 60.8
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.3e-295 1017.7 997 61.6
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 2.4e-294 1015.8 996 61.5
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 4.1e-294 1015.0 982 59.8
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 7.0e-294 1014.2 964 60.4
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 2.2e-292 1009.2 1036 59.1
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 9.4e-291 1003.8 996 58.5
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 9.4e-291 1003.8 1062 56.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.6e-290 1003.0 1047 56.7
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 1.0e-289 1000.3 999 58.2
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 3.0e-289 998.8 1058 56.2
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.6e-288 995.7 1057 57.6
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.6e-288 995.7 1013 60.0
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 5.7e-288 994.6 1005 58.8
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 7.4e-288 994.2 999 59.1
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 7.4e-288 994.2 994 61.8
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 9.7e-288 993.8 1023 58.9
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 2.8e-287 992.3 1019 58.6
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 3.7e-287 991.9 908 61.5
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 3.7e-287 991.9 1010 57.9
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 4.8e-287 991.5 1011 57.9
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.4e-286 989.9 1005 58.3
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.4e-286 989.9 1056 57.2
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 7.7e-285 984.2 1019 58.6
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 3.2e-283 978.8 1024 57.2
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 3.2e-283 978.8 1010 57.3
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 1.0e-281 973.8 981 57.9
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 3.0e-281 972.2 1005 59.5
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 6.7e-281 971.1 1022 57.0
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 9.7e-280 967.2 1026 58.5
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 2.2e-279 966.1 1043 57.3
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 4.8e-279 964.9 1159 54.3
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 2.4e-278 962.6 1029 57.5
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 4.1e-278 961.8 1002 56.8
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.3e-278 961.4 1000 60.0
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 6.5e-276 954.5 1006 56.1
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.2e-275 952.2 1020 54.4
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 7.2e-275 951.0 1044 54.9
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 2.1e-274 949.5 1036 57.1
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.3e-271 940.3 1011 55.1
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 6.3e-271 937.9 1009 53.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 5.4e-270 934.9 1000 58.4
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 7.7e-269 931.0 850 61.8
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 8.6e-268 927.5 1015 56.1
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 1.2e-266 923.7 1038 56.1
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 4.7e-266 921.8 985 56.4
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.3e-263 913.7 1035 54.2
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 4.9e-263 911.8 869 60.5
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 4.1e-262 908.7 1011 56.7
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.2e-261 907.1 1020 56.3
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 3.3e-259 899.0 1002 56.3
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 4.7e-258 895.2 878 58.2
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 8.9e-257 891.0 1022 52.8
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 4.4e-256 888.6 1035 53.6
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 7.0e-254 881.3 1032 53.7
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.3e-252 876.3 974 53.3
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 4.3e-251 872.1 1030 52.3
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 1.6e-250 870.2 999 54.2
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 4.4e-248 862.1 872 58.9
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 7.5e-248 861.3 986 54.2
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 9.8e-248 860.9 1031 51.7
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 7.0e-246 854.7 861 57.7
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 2.1e-245 853.2 987 54.2
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.2e-242 844.0 1010 53.7
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 6.2e-242 841.6 829 57.1
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 1.7e-239 833.6 1006 50.3
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 4.7e-234 815.5 1032 49.5
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 6.8e-233 811.6 1037 51.3
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 8.9e-233 811.2 789 58.8
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 1.6e-229 800.4 1042 48.9
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 3.5e-229 799.3 1024 48.7
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.0e-220 771.2 836 57.7
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 3.5e-213 746.1 687 63.8
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 7.4e-211 738.4 610 64.9
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.1e-205 720.3 996 47.8
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 2.3e-196 690.3 583 63.3
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.8e-193 680.6 610 62.6
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.9e-180 636.3 967 43.8
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 5.1e-180 636.0 951 44.0
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 2.0e-179 634.0 888 43.1
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 9.4e-174 615.1 1029 40.7
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 2.8e-162 577.0 507 65.7
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 4.1e-161 573.2 557 57.5
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.7e-159 567.8 729 52.4
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 3.8e-151 540.0 563 57.4
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 2.0e-147 527.7 931 37.1
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 4.7e-141 506.5 610 49.2
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 2.3e-132 477.6 934 36.8
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 3.5e-120 437.2 357 65.8
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 1.7e-103 381.7 922 35.2
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.2e-97 360.9 366 57.1
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.2e-81 307.4 382 49.7
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.4e-75 287.7 834 34.5
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 5.0e-74 283.9 634 35.8
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 7.7e-67 260.0 567 37.9
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 6.1e-64 250.4 936 27.9
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 5.9e-59 233.8 200 63.0
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 7.5e-54 216.9 179 66.5
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 1.8e-52 212.2 222 56.8
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.7e-50 205.7 234 54.7
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 3.2e-49 201.4 243 54.3
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.0e-31 143.3 158 53.2
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.2e-30 139.8 132 62.1
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 7.5e-30 137.1 204 50.0
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 6.4e-29 134.0 159 53.5
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.1e-25 123.2 114 58.8
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.6e-24 119.4 180 52.2
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 4.0e-23 114.8 194 49.5
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 8.3e-21 107.1 81 71.6
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.1e-17 96.7 84 53.6
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 9.5e-17 93.6 57 75.4
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 1.1e-15 90.1 51 80.4
Sc16g0005200 Simmondsia chinensis HOM05D005068 ORTHO05D019833 8.9e-15 87.0 114 49.1
Sc16g0005110 Simmondsia chinensis HOM05D060119 ORTHO05D019833 1.4e-07 63.2 106 46.2


User provided reference genes

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