Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0875 Erigeron canadensis HOM05D005802 ORTHO05D006992 4.8e-149 531.2 276 100.0
Lsat_1_v5_gn_4_44621 Lactuca sativa HOM05D005802 ORTHO05D006992 8.0e-112 407.5 266 80.5
HanXRQChr03g0088101 Helianthus annuus HOM05D005802 ORTHO05D006992 7.3e-105 384.4 268 76.9
CiPaw.13G033000 Carya illinoinensis HOM05D005802 ORTHO05D006992 1.5e-97 360.1 277 69.7
Actinidia12678 Actinidia chinensis HOM05D005802 ORTHO05D006992 1.9e-97 359.8 267 70.0
CSS0000774 Camellia sinensis var. sinensis HOM05D005802 ORTHO05D006992 1.1e-95 354.0 264 68.9
COL.COLO4_12497 Corchorus olitorius HOM05D005802 ORTHO05D006992 4.0e-95 352.1 269 69.5
Duzib133G1160 Durio zibethinus HOM05D005802 ORTHO05D006992 5.2e-95 351.7 265 69.1
QL04p039160 Quercus lobata HOM05D005802 ORTHO05D006992 5.2e-95 351.7 275 68.4
Haze_02673 Corylus avellana HOM05D005802 ORTHO05D006992 2.9e-93 345.9 281 67.3
Prupe.2G138600 Prunus persica HOM05D005802 ORTHO05D006992 6.4e-93 344.7 277 65.0
Rhsim01G0150000 Rhododendron simsii HOM05D005802 ORTHO05D006992 8.3e-93 344.4 267 67.8
MD02G1209900 Malus domestica HOM05D005802 ORTHO05D006992 1.4e-92 343.6 260 67.7
Gohir.A12G094400 Gossypium hirsutum HOM05D005802 ORTHO05D006992 2.4e-92 342.8 264 67.8
Gohir.D12G097200 Gossypium hirsutum HOM05D005802 ORTHO05D006992 9.2e-92 340.9 264 67.0
Lj3g0015572 Lotus japonicus HOM05D005802 ORTHO05D006992 2.1e-91 339.7 266 65.8
Potri.014G060000 Populus trichocarpa HOM05D005802 ORTHO05D006992 2.1e-91 339.7 263 69.6
Thecc.01G381900 Theobroma cacao HOM05D005802 ORTHO05D006992 4.6e-91 338.6 264 68.2
Medtr4g026180 Medicago truncatula HOM05D005802 ORTHO05D006992 1.3e-90 337.0 265 64.9
AL5G42970 Arabidopsis lyrata HOM05D005802 ORTHO05D006992 1.7e-90 336.7 268 66.0
Aa31LG10G14950 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.3e-90 336.3 280 63.9
Gorai.008G105800 Gossypium raimondii HOM05D005802 ORTHO05D006992 2.3e-90 336.3 264 67.0
BolC8t51149H Brassica oleracea HOM05D005802 ORTHO05D006992 3.0e-90 335.9 265 64.9
DCAR_025098 Daucus carota HOM05D005802 ORTHO05D006992 3.0e-90 335.9 275 65.1
arahy.Tifrunner.gnm1.ann1.I9SF1K Arachis hypogaea HOM05D005802 ORTHO05D006992 3.9e-90 335.5 274 64.6
AT3G60660 Arabidopsis thaliana HOM05D005802 ORTHO05D006992 5.1e-90 335.1 268 66.0
Phvul.010G077700 Phaseolus vulgaris HOM05D005802 ORTHO05D006992 8.6e-90 334.3 266 65.8
Cfa011175 Carpinus fangiana HOM05D005802 ORTHO05D006992 1.5e-89 333.6 260 67.3
Manes.05G048500 Manihot esculenta HOM05D005802 ORTHO05D006992 1.5e-89 333.6 269 65.8
GSVIVG01027639001 Vitis vinifera HOM05D005802 ORTHO05D006992 1.5e-89 333.6 265 66.0
PGR042G3152 Punica granatum HOM05D005802 ORTHO05D006992 2.5e-89 332.8 280 64.6
C08p35600 Brassica napus HOM05D005802 ORTHO05D006992 3.3e-89 332.4 269 63.9
Glyma.01G137000 Glycine max HOM05D005802 ORTHO05D006992 4.3e-89 332.0 266 64.3
Migut.B01600 Erythranthe guttata HOM05D005802 ORTHO05D006992 7.3e-89 331.3 262 65.6
Nn6g34003 Nelumbo nucifera HOM05D005802 ORTHO05D006992 7.3e-89 331.3 265 64.9
CARHR171060 Cardamine hirsuta HOM05D005802 ORTHO05D006992 9.5e-89 330.9 269 64.7
Atru.chr5.259 Acer truncatum HOM05D005802 ORTHO05D006992 1.2e-88 330.5 260 67.3
THA.LOC104802463 Tarenaya hassleriana HOM05D005802 ORTHO05D006992 1.6e-88 330.1 281 64.8
MSTRG.17165 Avicennia marina HOM05D005802 ORTHO05D006992 2.1e-88 329.7 262 65.6
TPR.G5024 Trifolium pratense HOM05D005802 ORTHO05D006992 1.1e-87 327.4 269 63.9
Cpa.g.sc49.162 Carica papaya HOM05D005802 ORTHO05D006992 1.4e-87 327.0 267 66.7
Thhalv10006164m.g Eutrema salsugineum HOM05D005802 ORTHO05D006992 1.4e-87 327.0 269 64.3
Psat7g217800 Pisum sativum HOM05D005802 ORTHO05D006992 1.8e-87 326.6 266 65.0
Sabra14G0043900 Salix brachista HOM05D005802 ORTHO05D006992 3.1e-87 325.9 273 66.3
Sp5g02580 Schrenkiella parvula HOM05D005802 ORTHO05D006992 3.1e-87 325.9 269 63.6
PGSC0003DMG400007022 Solanum tuberosum HOM05D005802 ORTHO05D006992 4.0e-87 325.5 264 65.5
Sc02g0002770 Simmondsia chinensis HOM05D005802 ORTHO05D006992 5.2e-87 325.1 265 62.6
BcaC07g40584 Brassica carinata HOM05D005802 ORTHO05D006992 6.8e-87 324.7 271 62.7
Eucgr.D02489 Eucalyptus grandis HOM05D005802 ORTHO05D006992 8.9e-87 324.3 265 64.5
Solyc05g050900.4 Solanum lycopersicum HOM05D005802 ORTHO05D006992 1.2e-86 323.9 264 65.5
CAN.G106.25 Capsicum annuum HOM05D005802 ORTHO05D006992 1.5e-86 323.6 263 64.6
A09p52850 Brassica napus HOM05D005802 ORTHO05D006992 2.0e-86 323.2 269 62.1
TAR375G0577 Trochodendron aralioides HOM05D005802 ORTHO05D006992 2.6e-86 322.8 263 63.5
AUR62013665 Chenopodium quinoa HOM05D005802 ORTHO05D006992 3.4e-86 322.4 278 61.2
Ciclev10021687m.g Citrus clementina HOM05D005802 ORTHO05D006992 3.4e-86 322.4 264 63.3
Sopen05g029380 Solanum pennellii HOM05D005802 ORTHO05D006992 4.4e-86 322.0 264 65.2
arahy.Tifrunner.gnm1.ann1.GQKS8P Arachis hypogaea HOM05D005802 ORTHO05D006992 5.8e-86 321.6 310 57.4
FAN06G1875 Fragaria x ananassa HOM05D005802 ORTHO05D006992 9.9e-86 320.9 293 60.8
FAN06G3617 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-85 320.5 283 62.5
FAN10G1300 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-85 320.5 271 63.8
Peaxi162Scf01052g00014 Petunia axillaris HOM05D005802 ORTHO05D006992 1.3e-85 320.5 264 63.6
TWI23G1076 Tripterygium wilfordii HOM05D005802 ORTHO05D006992 2.9e-85 319.3 263 65.0
CANSAT56G0664 Cannabis sativa HOM05D005802 ORTHO05D006992 3.8e-85 318.9 267 63.3
FAN03G1851 Fragaria x ananassa HOM05D005802 ORTHO05D006992 6.4e-85 318.2 283 61.1
RcHm_v2.0_Chr5g0028911 Rosa chinensis HOM05D005802 ORTHO05D006992 1.9e-84 316.6 282 61.0
Carub.0005s2739 Capsella rubella HOM05D005802 ORTHO05D006992 2.4e-84 316.2 259 65.6
FAN10G3200 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.4e-84 315.1 283 61.8
Cc02_g24280 Coffea canephora HOM05D005802 ORTHO05D006992 7.1e-84 314.7 266 63.2
Carub.0005s2750 Capsella rubella HOM05D005802 ORTHO05D006992 2.7e-83 312.8 260 65.0
Nitab4.5_0001329g0060 Nicotiana tabacum HOM05D005802 ORTHO05D006992 4.6e-83 312.0 254 65.7
Dinv44124 Davidia involucrata HOM05D005802 ORTHO05D006992 6.0e-83 311.6 246 66.7
SalBow5G5068 Salvia bowleyana HOM05D005802 ORTHO05D006992 1.0e-82 310.8 262 62.6
Hund27376 Selenicereus undatus HOM05D005802 ORTHO05D006992 5.1e-82 308.5 279 59.9
ClCG09G008930 Citrullus lanatus HOM05D005802 ORTHO05D006992 1.1e-81 307.4 266 62.4
VMungo0331G0187 Vigna mungo HOM05D005802 ORTHO05D006992 1.6e-80 303.5 241 67.2
PSO478G1061 Papaver somniferum HOM05D005802 ORTHO05D006992 2.8e-80 302.8 267 59.9
Aqoxy7G00743 Aquilegia oxysepala HOM05D005802 ORTHO05D006992 3.6e-80 302.4 264 60.2
FAN01G2984 Fragaria x ananassa HOM05D005802 ORTHO05D006992 3.6e-80 302.4 292 57.9
Actinidia28320 Actinidia chinensis HOM05D005802 ORTHO05D006992 8.1e-80 301.2 221 70.6
PSO017G7043 Papaver somniferum HOM05D005802 ORTHO05D006992 8.1e-80 301.2 267 59.6
Sed0027573 Sechium edule HOM05D005802 ORTHO05D006992 8.1e-80 301.2 265 61.9
BraA09t40717Z Brassica rapa HOM05D005802 ORTHO05D006992 6.9e-79 298.1 334 50.6
AUR62004168 Chenopodium quinoa HOM05D005802 ORTHO05D006992 9.0e-79 297.7 279 58.8
CsaV3_7G026130 Cucumis sativus L. HOM05D005802 ORTHO05D006992 5.8e-78 295.0 266 61.3
FvH4_7g11150 Fragaria vesca HOM05D005802 ORTHO05D006992 1.3e-77 293.9 252 63.5
vmacro21028 Vaccinium macrocarpon HOM05D005802 ORTHO05D006992 2.9e-77 292.7 265 63.0
ATR1153G072 Amborella trichopoda HOM05D005802 ORTHO05D006992 8.7e-74 281.2 263 57.0
SGA_v2.0_scaffold153G36973 Striga asiatica HOM05D005802 ORTHO05D006992 3.3e-73 279.3 239 61.1
Os07g0484500 Oryza sativa ssp. japonica HOM05D005802 ORTHO05D006992 4.0e-71 272.3 273 54.6
Nitab4.5_0005050g0030 Nicotiana tabacum HOM05D005802 ORTHO05D006992 6.9e-71 271.6 263 59.3
Ca_02431_v3 Cicer arietinum L. HOM05D005802 ORTHO05D006992 3.0e-66 256.1 249 58.2
Zm00001eb321530 Zea mays HOM05D005802 ORTHO05D006992 1.3e-64 250.8 261 50.6
Lj7A534G38 Lonicera japonica HOM05D000908 ORTHO05D000789 2.2e-61 240.0 239 57.7
CDE04G3422 Ceratophyllum demersum HOM05D005802 ORTHO05D006992 2.9e-61 239.6 282 48.6
EL10Ac1g00841 Beta vulgaris HOM05D005802 ORTHO05D006992 7.9e-59 231.5 276 50.0
TAR375G0251 Trochodendron aralioides HOM05D005802 ORTHO05D006992 8.7e-58 228.0 189 60.3
Lalb_Chr12g0208021 Lupinus albus HOM05D005802 ORTHO05D006992 1.6e-56 223.8 183 61.7
Oeu051925.1 Olea europaea HOM05D005802 ORTHO05D006992 3.1e-55 219.5 247 53.0
Mapoly0010s0189 Marchantia polymorpha HOM05D005802 ORTHO05D006992 1.5e-54 217.2 263 46.8
Pp3c6_12030 Physcomitrium patens HOM05D005802 ORTHO05D006992 1.2e-51 207.6 266 45.5
RcHm_v2.0_Chr1g0349231 Rosa chinensis HOM05D005802 ORTHO05D006992 1.6e-51 207.2 195 56.9
AagrBONN_evm.TU.Sc2ySwM_368.1567 Anthoceros agrestis HOM05D005802 ORTHO05D006992 2.3e-50 203.4 255 43.5
MELO3C021033.2 Cucumis melo HOM05D005802 ORTHO05D006992 7.4e-49 198.4 193 59.1
SMO347G0664 Selaginella moellendorffii HOM05D005802 ORTHO05D006992 2.2e-48 196.8 224 48.2
Oeu051926.1 Olea europaea HOM05D005802 ORTHO05D006992 5.3e-47 192.2 152 63.2
RcHm_v2.0_Chr1g0349201 Rosa chinensis HOM05D005802 ORTHO05D006992 2.6e-38 163.3 350 36.6
Actinidia33479 Actinidia chinensis HOM05D005802 ORTHO05D006992 5.7e-33 145.6 132 56.8
FAN03G0906 Fragaria x ananassa HOM05D005802 ORTHO05D006992 5.7e-33 145.6 115 68.7
FAN03G0348 Fragaria x ananassa HOM05D005802 ORTHO05D006992 7.4e-33 145.2 115 67.8
Ah.05g173880 Amaranthus hybridus HOM05D005802 ORTHO05D006992 4.1e-31 139.4 108 65.7
ECA240G2706 Erigeron canadensis HOM05D001255 ORTHO05D001246 2.6e-30 136.7 70 97.1
Oeu055514.1 Olea europaea HOM05D005802 ORTHO05D006992 1.7e-29 134.0 140 55.7
SHI22577 Sapria himalayana HOM05D005802 ORTHO05D006992 1.4e-28 131.0 106 65.1
Ah.05g173870 Amaranthus hybridus HOM05D005802 ORTHO05D006992 2.7e-27 126.7 142 49.3
RcHm_v2.0_Chr1g0349241 Rosa chinensis HOM05D005802 ORTHO05D006992 3.0e-26 123.2 106 60.4
Cc00_g05160 Coffea canephora HOM05D005802 ORTHO05D006992 6.7e-26 122.1 108 61.1
RcHm_v2.0_Chr1g0349251 Rosa chinensis HOM05D005802 ORTHO05D006992 6.7e-26 122.1 84 73.8
Cre16.g672500 Chlamydomonas reinhardtii HOM05D005802 ORTHO05D006992 4.4e-25 119.4 289 31.5
Glyma.03G031466 Glycine max HOM05D005802 ORTHO05D006992 9.7e-25 118.2 84 67.9
Cc00_g05150 Coffea canephora HOM05D005802 ORTHO05D006992 1.3e-24 117.9 110 59.1
CBR_g48776 Chara braunii HOM05D005802 ORTHO05D006992 2.8e-24 116.7 237 32.5
Hma1.2p1_0072F.1_g038280 Hydrangea macrophylla HOM05D005802 ORTHO05D006992 9.1e-23 111.7 97 68.0
RcHm_v2.0_Chr1g0349161 Rosa chinensis HOM05D005802 ORTHO05D006992 9.1e-23 111.7 146 45.9
SHI22578 Sapria himalayana HOM05D005802 ORTHO05D006992 9.4e-20 101.7 87 60.9
Lalb_Chr12g0208011 Lupinus albus HOM05D005802 ORTHO05D006992 4.7e-19 99.4 72 73.6
Oeu045806.1 Olea europaea HOM05D005802 ORTHO05D006992 1.8e-18 97.4 69 72.5
RcHm_v2.0_Chr1g0349171 Rosa chinensis HOM05D005802 ORTHO05D006992 4.4e-17 92.8 56 82.1
FAN10G4230 Fragaria x ananassa HOM05D005802 ORTHO05D006992 1.3e-16 91.3 56 78.6
CARHR170760 Cardamine hirsuta HOM05D005802 ORTHO05D006992 6.3e-16 89.0 75 64.0
C04p32020 Brassica napus HOM05D010895 ORTHO05D012939 7.0e-15 85.5 116 45.7
Dinv44127 Davidia involucrata HOM05D005802 ORTHO05D006992 5.9e-14 82.4 58 67.2
BolC4t24754H Brassica oleracea HOM05D005802 ORTHO05D006992 1.3e-13 81.3 103 49.5
Glyma.03G031532 Glycine max HOM05D005802 ORTHO05D006992 3.4e-09 66.6 89 47.2
SGA_v2.0_scaffold123G33454 Striga asiatica HOM05D000451 ORTHO05D000351 3.7e-08 63.2 98 38.8
Aa31sc27G90 Aethionema arabicum HOM05D005802 ORTHO05D006992 2.7e-06 57.0 47 61.7


User provided reference genes

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