Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 8.5e-131 470.3 234 100.0
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.7e-91 339.7 226 74.3
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.5e-82 310.1 176 81.8
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 1.8e-67 260.0 189 65.6
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.3e-67 259.6 197 62.9
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 6.7e-67 258.1 189 63.5
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 6.7e-67 258.1 211 58.8
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 8.7e-67 257.7 192 63.5
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 4.3e-66 255.4 214 57.5
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 2.1e-65 253.1 222 58.6
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 4.8e-65 251.9 178 64.0
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 6.2e-65 251.5 211 57.8
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 3.1e-64 249.2 211 58.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 3.1e-64 249.2 213 57.3
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 5.3e-64 248.4 193 59.1
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 9.0e-64 247.7 214 56.5
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 9.0e-64 247.7 174 64.9
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 9.0e-64 247.7 200 61.0
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 1.5e-63 246.9 196 60.7
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 2.0e-63 246.5 177 62.7
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 4.5e-63 245.4 232 55.6
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 4.5e-63 245.4 175 64.0
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 4.5e-63 245.4 212 58.0
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 5.8e-63 245.0 219 55.3
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 2.2e-62 243.0 187 58.8
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 4.9e-62 241.9 193 58.5
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 6.5e-62 241.5 209 56.9
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 6.5e-62 241.5 173 61.3
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 8.4e-62 241.1 224 55.4
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 8.4e-62 241.1 197 57.4
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.1e-61 240.7 227 55.9
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 1.9e-61 240.0 215 55.8
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 1.9e-61 240.0 208 56.2
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 2.5e-61 239.6 207 58.9
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 3.2e-61 239.2 210 57.6
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 4.2e-61 238.8 196 57.1
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 5.5e-61 238.4 193 58.5
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 7.1e-61 238.0 209 57.9
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 9.3e-61 237.7 216 56.5
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 3.5e-60 235.7 175 60.0
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 6.0e-60 235.0 194 58.2
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 1.0e-59 234.2 208 57.7
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 3.0e-59 232.6 192 58.3
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 3.0e-59 232.6 172 61.6
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 3.9e-59 232.3 236 52.5
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 5.1e-59 231.9 170 60.0
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 6.7e-59 231.5 209 52.6
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 8.7e-59 231.1 188 58.5
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 8.7e-59 231.1 173 60.7
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.1e-58 230.7 214 50.9
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.1e-58 230.7 173 63.0
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.9e-58 229.9 236 52.1
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 1.9e-58 229.9 194 55.7
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 2.5e-58 229.6 204 56.9
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 3.3e-58 229.2 173 61.8
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 4.3e-58 228.8 222 47.7
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 4.3e-58 228.8 236 52.1
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 5.7e-58 228.4 216 53.2
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 9.6e-58 227.6 170 61.8
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 3.7e-57 225.7 202 57.4
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 8.2e-57 224.6 200 54.0
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 3.1e-56 222.6 215 50.2
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 4.1e-56 222.2 189 52.9
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 4.1e-56 222.2 189 52.9
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 4.1e-56 222.2 201 57.2
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 5.3e-56 221.9 169 57.4
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 2.0e-55 219.9 178 55.1
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.4e-55 219.2 225 48.0
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 2.9e-54 216.1 189 52.4
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 2.9e-54 216.1 189 52.4
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 6.5e-54 214.9 177 52.5
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 1.4e-53 213.8 205 46.8
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.9e-53 213.4 189 51.9
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 4.2e-53 212.2 204 50.0
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 5.5e-53 211.8 214 50.0
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 7.2e-53 211.5 224 46.9
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 9.3e-53 211.1 168 53.0
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 2.7e-52 209.5 172 52.3
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 1.3e-51 207.2 157 60.5
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 3.9e-51 205.7 229 45.0
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 8.7e-51 204.5 184 48.4
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 1.9e-50 203.4 187 51.9
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 3.3e-50 202.6 220 44.5
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 7.4e-50 201.4 170 56.5
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 8.2e-49 198.0 217 47.5
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 1.1e-48 197.6 217 47.5
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.4e-48 197.2 210 50.5
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 4.1e-48 195.7 237 43.5
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 3.2e-45 186.0 165 52.1
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 6.3e-41 171.8 234 44.4
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.3e-40 168.7 157 52.2
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 3.6e-36 156.0 152 53.9
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 3.7e-33 146.0 128 57.0
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 3.7e-33 146.0 169 40.2
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 7.7e-31 138.3 139 50.4
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 3.2e-29 132.9 121 50.4
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 5.5e-29 132.1 172 41.9
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 3.0e-27 126.3 136 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 6.3e-25 118.6 133 37.6
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.1e-20 103.6 70 60.0
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 2.7e-20 103.2 203 30.5
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 2.3e-19 100.1 70 60.0
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.5e-18 97.4 53 81.1
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 2.0e-18 97.1 71 60.6
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 9.1e-16 88.2 175 30.9
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 1.0e-14 84.7 168 29.2
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 2.5e-13 80.1 83 44.6
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 4.2e-13 79.3 154 33.1
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 1.8e-11 73.9 151 31.1
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 4.0e-11 72.8 95 41.1
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 5.2e-11 72.4 158 30.4
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 1.2e-10 71.2 115 34.8
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.2e-10 71.2 166 30.1
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 2.0e-10 70.5 205 28.3
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 2.6e-10 70.1 166 30.1
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 5.7e-10 68.9 204 21.6
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 5.7e-10 68.9 204 22.5
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 5.7e-10 68.9 163 27.6
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 7.5e-10 68.6 165 27.3
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 7.5e-10 68.6 142 27.5
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.3e-09 67.8 140 29.3
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.7e-09 67.4 140 29.3
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 2.2e-09 67.0 176 23.9
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 2.8e-09 66.6 98 36.7
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 3.7e-09 66.2 218 25.7
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 4.9e-09 65.9 145 26.2
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 8.3e-09 65.1 35 74.3
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.4e-08 64.3 149 26.2
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 1.4e-08 64.3 161 23.6
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 2.4e-08 63.5 165 23.6
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 7.0e-08 62.0 159 24.5
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 9.2e-08 61.6 203 24.6
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 9.2e-08 61.6 166 29.5
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 1.6e-07 60.8 133 27.8
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 2.0e-07 60.5 215 25.6
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 2.0e-07 60.5 159 22.6
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 2.7e-07 60.1 138 27.5
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 2.7e-07 60.1 126 27.8
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 4.5e-07 59.3 138 25.4
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 7.8e-07 58.5 161 23.6
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 7.8e-07 58.5 202 24.3
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 1.0e-06 58.2 157 23.6
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 1.7e-06 57.4 136 26.5
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 2.3e-06 57.0 136 22.8


User provided reference genes

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