Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1784.2 882 100.0
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1193.3 887 67.9
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1162.5 923 64.9
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1146.7 953 61.9
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 937 60.5
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1105.5 929 60.9
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1104.4 928 60.9
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1093.6 932 60.5
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1092.4 938 60.1
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1088.2 934 60.4
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 914 62.1
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1085.5 909 60.7
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 897 61.9
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 938 60.1
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1077.4 922 60.3
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1077.0 924 60.7
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1075.5 920 60.5
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 6.0e-312 1074.7 923 61.1
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 6.0e-312 1074.7 935 59.4
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 1.8e-311 1072.4 936 58.8
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 2.4e-311 1072.0 948 59.3
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 3.0e-311 1071.6 911 60.7
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 3.0e-311 1071.6 924 60.5
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 4.2e-311 1071.2 928 60.7
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 2.7e-310 1068.5 925 59.9
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 1.7e-309 1065.8 931 59.4
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 2.3e-309 1065.4 925 59.8
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 6.6e-309 1063.9 925 60.6
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 1.5e-308 1062.8 968 58.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 2.5e-308 1062.0 912 61.3
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 3.3e-308 1061.6 947 58.9
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 7.3e-308 1060.4 973 57.5
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 1.4e-306 1056.2 920 59.9
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 2.3e-306 1055.4 955 59.9
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.0e-306 1054.7 937 59.9
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 4.0e-306 1054.7 956 59.1
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 8.9e-306 1053.5 937 59.3
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 1.2e-305 1053.1 937 58.8
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 4.4e-305 1051.2 894 60.4
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 9.8e-305 1050.0 947 58.3
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 2.9e-304 1048.5 909 59.1
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 6.4e-304 1047.3 916 59.7
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 6.4e-304 1047.3 993 57.4
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 1.1e-303 1046.6 936 59.0
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.9e-303 1045.8 929 59.1
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.2e-302 1043.1 937 58.9
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 1.6e-302 1042.7 908 59.4
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 7.8e-302 1040.4 925 59.1
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 1.0e-301 1040.0 908 59.6
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.7e-301 1039.3 903 59.2
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 5.1e-301 1037.7 984 56.3
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 8.6e-301 1036.9 993 56.6
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 1.5e-300 1036.2 956 58.4
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.3e-300 1035.0 992 56.5
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.2e-299 1033.1 993 56.3
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 3.6e-299 1031.6 933 58.8
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 3.6e-299 1031.6 905 59.1
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 3.6e-299 1031.6 959 57.6
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 1.4e-298 1029.6 910 59.0
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 3.1e-298 1028.5 924 58.3
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 5.2e-298 1027.7 923 58.5
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 5.2e-298 1027.7 942 57.6
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 1.2e-297 1026.5 902 58.9
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 1.2e-297 1026.5 929 57.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 3.4e-297 1025.0 918 59.0
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 5.8e-297 1024.2 923 58.9
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 9.9e-297 1023.5 923 58.3
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 2.2e-296 1022.3 919 58.9
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 4.9e-296 1021.1 919 59.1
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 4.9e-296 1021.1 919 59.1
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 4.9e-296 1021.1 870 60.8
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 2.4e-295 1018.8 940 57.0
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 3.2e-295 1018.5 924 57.6
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 3.2e-295 1018.5 921 57.9
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 3.2e-295 1018.5 922 58.7
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 3.2e-295 1018.5 920 58.0
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 9.2e-295 1016.9 921 58.5
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.6e-294 1016.1 889 59.2
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 3.5e-294 1015.0 938 57.2
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.3e-293 1012.3 942 57.7
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 2.3e-293 1012.3 951 56.8
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 2.8e-291 1005.4 902 59.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 3.6e-291 1005.0 1019 53.6
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.4e-290 1002.3 902 59.1
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 5.2e-290 1001.1 963 54.9
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 1.5e-289 999.6 924 57.3
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 2.0e-289 999.2 924 57.0
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 5.8e-289 997.7 923 58.0
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 2.9e-288 995.3 902 57.8
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 2.9e-288 995.3 902 57.8
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 2.9e-288 995.3 1053 51.8
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.7e-286 988.8 921 57.5
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 5.1e-285 984.6 1023 53.7
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.6e-285 984.2 848 61.3
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 2.5e-284 982.2 939 57.3
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.0e-282 974.9 859 60.0
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.5e-281 973.0 1035 52.1
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 5.8e-281 971.1 929 56.1
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.9e-279 966.1 842 60.1
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 1.3e-275 953.4 1073 50.8
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 3.6e-275 951.8 956 54.5
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 6.2e-275 951.0 931 55.9
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 4.2e-271 938.3 847 58.0
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 5.1e-269 931.4 923 54.9
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.1e-268 930.2 927 54.4
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 3.7e-267 925.2 975 52.8
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 6.2e-267 924.5 955 53.6
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 4.0e-266 921.8 812 59.6
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.9e-266 921.0 1048 49.6
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 2.5e-260 902.5 1188 46.8
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 4.3e-260 901.7 790 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 3.3e-244 849.0 851 52.4
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.2e-243 846.3 942 49.0
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 5.3e-242 841.6 870 52.0
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.7e-238 829.3 757 58.4
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 3.9e-237 825.5 788 53.8
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.7e-235 820.1 953 49.8
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-226 790.8 754 56.5
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 3.4e-220 769.2 1098 41.7
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.3e-219 765.0 670 60.1
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 2.9e-208 729.6 715 55.1
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.6e-184 648.7 662 55.1
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 9.5e-183 644.8 608 57.1
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 6.0e-177 625.5 624 54.0
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 9.9e-172 608.2 428 71.3
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 4.5e-164 582.8 751 45.4
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.3e-147 528.1 358 72.3
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 9.3e-146 521.9 404 65.8
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.5e-140 504.6 404 64.9
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 7.6e-140 502.3 306 80.4
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.4e-130 471.5 463 56.8
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-128 464.9 548 49.6
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 8.2e-118 429.1 705 39.4
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.0e-112 410.6 557 44.5
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 5.7e-111 406.4 282 69.9
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.7e-108 396.0 301 64.1
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.0e-103 381.3 319 60.2
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.3e-99 367.9 377 52.5
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 2.6e-95 354.4 339 52.8
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.1e-74 285.8 221 64.7
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 9.9e-47 193.0 150 59.3
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.2e-45 187.6 212 47.2
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.0e-43 183.0 151 62.3
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.4e-37 162.5 105 71.4
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.5e-34 151.8 164 47.0
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 2.4e-32 145.2 129 52.7
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 4.6e-28 131.0 108 54.6
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.8e-27 129.0 76 78.9
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-23 116.3 97 60.8
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.0e-22 113.2 279 34.4
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.9e-22 111.7 87 64.4
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.6e-15 88.6 80 58.8
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 5.0e-14 84.3 68 58.8
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 5.5e-13 80.9 165 35.2
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.6e-10 72.0 66 43.9
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 9.7e-10 70.1 52 61.5
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.8e-09 68.6 68 50.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.7e-09 68.2 53 62.3
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 6.3e-09 67.4 53 58.5
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 6.3e-09 67.4 53 58.5
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.8e-08 65.9 46 63.0
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.1e-08 65.1 60 51.7
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 7.0e-08 63.9 53 58.5
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 9.1e-08 63.5 47 57.4
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.2e-07 63.2 52 59.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.9e-07 60.8 70 45.7
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 3.8e-06 58.2 60 53.3
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 3.8e-06 58.2 98 38.8
VMungo0251G2090 Vigna mungo HOM05D003461 ORTHO05D006812 6.5e-06 57.4 42 57.1


User provided reference genes

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