Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 0.0e+00 1112.8 572 100.0
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.7e-271 938.3 574 84.7
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 3.5e-271 937.9 574 85.5
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 6.7e-270 933.7 590 83.6
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 9.7e-253 876.7 556 79.5
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.1e-248 863.2 571 77.9
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.4e-248 862.8 569 77.9
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 7.2e-248 860.5 566 78.1
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 5.1e-246 854.4 561 77.7
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.3e-245 851.7 528 81.6
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.8e-244 848.6 566 77.2
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 3.7e-244 848.2 557 78.3
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.7e-244 848.2 556 77.9
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 6.3e-244 847.4 564 76.8
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 8.2e-244 847.0 571 75.8
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 2.4e-243 845.5 566 76.0
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 5.3e-243 844.3 575 76.0
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 5.3e-243 844.3 577 74.9
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.2e-242 843.2 527 80.6
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 2.0e-242 842.4 551 76.8
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 2.6e-242 842.0 571 75.7
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 3.4e-242 841.6 575 76.5
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.3e-241 839.7 538 78.6
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.7e-241 839.3 548 77.9
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.7e-241 839.3 569 75.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 2.2e-241 839.0 577 76.1
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.8e-241 838.2 560 77.3
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 6.5e-241 837.4 572 76.2
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 6.5e-241 837.4 536 78.4
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.4e-240 836.3 567 76.0
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.4e-240 836.3 563 77.3
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.5e-240 835.5 575 76.2
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 3.2e-240 835.1 546 76.6
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.2e-240 835.1 579 75.1
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.2e-240 835.1 581 75.0
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 3.2e-240 835.1 574 75.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 3.2e-240 835.1 569 75.2
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 4.2e-240 834.7 575 74.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 4.2e-240 834.7 566 76.0
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 5.5e-240 834.3 567 75.3
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 5.5e-240 834.3 551 77.1
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 5.5e-240 834.3 581 74.9
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 9.4e-240 833.6 566 75.8
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.6e-239 832.8 540 78.3
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 2.7e-239 832.0 520 80.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 3.6e-239 831.6 536 78.9
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 6.1e-239 830.9 574 74.9
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 8.0e-239 830.5 521 80.4
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.4e-238 829.7 532 78.2
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.3e-238 828.9 509 81.5
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 3.0e-238 828.6 548 77.7
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 8.8e-238 827.0 532 78.9
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 2.6e-237 825.5 559 75.1
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 5.7e-237 824.3 571 75.5
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 7.4e-237 823.9 551 75.9
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 7.4e-237 823.9 559 75.1
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 7.4e-237 823.9 516 80.2
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 9.7e-237 823.5 536 76.7
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.7e-236 822.8 565 74.5
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 3.7e-236 821.6 551 75.7
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 6.3e-236 820.8 553 75.9
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 8.2e-236 820.5 596 72.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.4e-235 819.7 550 76.9
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.4e-235 819.7 550 75.8
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 9.1e-235 817.0 567 74.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.2e-234 816.6 558 74.9
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.2e-234 816.6 558 74.9
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.2e-234 816.6 558 74.9
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.0e-234 815.8 563 75.0
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-234 815.5 577 72.8
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 3.5e-234 815.1 560 76.1
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 3.5e-234 815.1 558 74.7
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 3.5e-234 815.1 558 74.7
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 4.5e-234 814.7 552 75.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.9e-234 814.3 514 78.4
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.3e-233 813.1 556 75.5
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 5.0e-233 811.2 557 74.1
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.5e-232 809.7 557 75.0
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 1.9e-232 809.3 557 74.9
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.2e-232 808.5 566 72.3
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 9.4e-232 807.0 573 72.4
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.6e-231 806.2 577 72.3
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.0e-230 803.5 572 72.6
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.2e-230 801.2 566 73.0
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 6.7e-230 800.8 569 72.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.7e-229 797.7 579 71.7
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 1.4e-227 793.1 543 74.2
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.4e-227 793.1 548 72.4
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.4e-227 793.1 525 75.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.4e-227 793.1 568 72.4
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-226 789.6 579 70.8
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 2.9e-225 785.4 585 70.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 5.0e-225 784.6 549 73.2
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 8.5e-225 783.9 552 73.6
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 4.2e-224 781.6 566 71.6
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.5e-221 773.1 549 71.6
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.8e-219 766.1 571 70.2
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 5.4e-219 764.6 461 82.9
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 2.0e-218 762.7 479 80.6
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 4.5e-218 761.5 516 74.4
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 5.0e-217 758.1 555 71.0
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 8.3e-212 740.7 489 76.1
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 4.5e-210 734.9 556 67.6
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 6.1e-207 724.5 525 70.9
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 8.9e-206 720.7 572 68.5
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 7.5e-205 717.6 511 68.9
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.3e-204 714.1 488 75.6
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 5.4e-203 711.4 505 69.9
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 1.7e-201 706.4 505 69.1
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 6.6e-193 677.9 447 74.9
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.9e-192 676.4 405 83.7
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 1.2e-189 667.2 561 62.0
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 9.9e-189 664.1 450 73.6
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.7e-188 663.3 568 64.1
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.1e-187 660.6 540 66.1
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.1e-183 646.4 498 63.5
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 4.7e-183 645.2 544 64.0
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 6.0e-178 628.2 577 60.7
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 4.7e-175 618.6 460 67.6
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 6.2e-175 618.2 489 61.6
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 5.8e-173 611.7 518 60.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.3e-168 595.5 588 58.0
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 5.1e-153 545.4 322 83.2
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 5.6e-152 542.0 342 81.0
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 9.6e-152 541.2 551 56.1
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 9.0e-150 534.6 522 55.9
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.2e-148 530.0 455 59.3
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 8.4e-148 528.1 503 57.7
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.1e-142 511.1 495 56.0
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.3e-142 508.8 494 55.5
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.9e-142 508.4 495 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 2.0e-128 463.8 331 67.7
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.1e-118 429.9 492 49.4
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 5.5e-115 419.1 493 45.4
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 4.0e-105 386.3 588 43.5
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 3.4e-104 383.3 547 40.0
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.8e-89 332.4 429 47.6
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 1.6e-85 321.2 427 41.0
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.8e-80 302.8 346 52.0
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.6e-68 262.3 175 79.4
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.5e-59 235.0 184 63.0
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 2.2e-55 221.1 566 33.0
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.2e-54 217.2 278 44.6
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 1.9e-46 191.4 137 71.5
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 3.9e-44 183.7 401 36.7
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 2.6e-40 171.0 106 84.0
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 7.6e-40 169.5 120 77.5
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.7e-37 161.0 105 77.1
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.3e-36 158.7 517 29.2
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.4e-32 144.1 145 52.4
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-28 132.5 80 76.2
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.0e-28 131.0 103 75.7
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 3.9e-28 130.6 77 87.0
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 7.2e-22 109.8 89 65.2
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.4e-20 105.5 71 73.2
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.2e-16 92.4 71 69.0
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 2.0e-16 91.7 54 85.2
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 3.4e-16 90.9 88 45.5
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.5e-15 86.7 49 89.8
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 1.1e-14 85.9 50 82.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.6e-13 82.0 56 76.8
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 3.0e-12 77.8 98 51.0
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 8.8e-12 76.3 53 69.8
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 9.1e-09 66.2 43 72.1
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 2.2e-07 61.6 57 57.9
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 1.9e-06 58.5 148 33.8
Cfa024452 Carpinus fangiana HOM05D001920 ORTHO05D123033 3.2e-06 57.8 237 26.6
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 3.2e-06 57.8 52 57.7


User provided reference genes

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