Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.1e-187 659.8 341 100.0
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.1e-170 602.4 333 90.1
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 2.3e-169 599.0 328 92.1
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.9e-163 579.3 326 86.8
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.9e-163 579.3 336 84.5
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 4.2e-163 578.2 326 87.1
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.2e-163 577.4 326 86.2
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.1e-162 575.9 326 86.2
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 2.7e-162 575.5 326 86.2
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 3.6e-162 575.1 326 86.2
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 4.7e-162 574.7 336 83.9
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.4e-161 573.2 323 86.4
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 3.0e-161 572.0 337 85.8
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 4.0e-161 571.6 328 85.4
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 8.8e-161 570.5 323 85.1
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.5e-160 569.7 336 81.2
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.0e-160 569.3 329 85.4
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 2.0e-160 569.3 339 81.7
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 2.0e-160 569.3 325 84.9
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 3.4e-160 568.5 325 84.6
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.3e-159 566.6 326 84.4
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.3e-159 566.6 320 86.9
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 2.2e-159 565.8 339 81.1
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.8e-159 565.5 328 84.8
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 6.3e-159 564.3 326 85.3
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 8.3e-159 563.9 326 83.7
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.8e-158 562.8 327 84.1
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 2.4e-158 562.4 328 84.1
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.1e-158 562.0 320 85.3
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 4.1e-158 561.6 327 82.0
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 9.2e-158 560.5 339 81.4
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 9.2e-158 560.5 322 83.2
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 5.9e-157 557.8 327 83.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.3e-156 556.6 363 77.1
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-156 556.2 325 83.1
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.7e-156 556.2 321 84.4
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 2.3e-156 555.8 326 83.1
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 2.3e-156 555.8 324 83.3
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.9e-156 555.4 317 84.2
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 3.8e-156 555.1 329 83.6
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-155 553.5 319 84.0
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.5e-155 553.1 319 84.0
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.5e-155 553.1 324 82.7
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 2.5e-155 552.4 341 80.1
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.3e-155 552.0 326 82.2
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 3.3e-155 552.0 329 81.8
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 5.6e-155 551.2 321 83.2
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 7.3e-155 550.8 322 82.3
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 2.1e-154 549.3 326 81.6
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 3.6e-154 548.5 322 82.3
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.6e-154 548.5 325 80.9
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 6.1e-154 547.7 325 80.6
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.4e-153 546.6 341 78.9
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.4e-153 546.6 316 84.5
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.8e-153 546.2 321 82.2
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.8e-153 546.2 321 82.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 2.3e-153 545.8 321 82.2
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 3.0e-153 545.4 373 72.7
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 4.0e-153 545.0 320 81.2
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 6.8e-153 544.3 369 73.2
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.9e-153 543.9 332 80.4
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.2e-152 543.5 318 83.6
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 2.0e-152 542.7 319 83.1
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 7.5e-152 540.8 319 83.7
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.2e-151 539.3 316 82.3
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.8e-150 536.2 317 81.7
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.8e-150 536.2 318 83.3
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 2.4e-150 535.8 318 83.3
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.2e-150 535.4 332 79.8
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 4.1e-150 535.0 324 79.9
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 5.4e-150 534.6 320 80.3
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 4.6e-149 531.6 362 73.8
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 4.6e-149 531.6 316 82.3
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 7.8e-149 530.8 329 78.7
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.7e-148 529.6 326 79.8
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 3.0e-148 528.9 322 79.8
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 3.9e-148 528.5 317 79.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.5e-147 526.6 395 70.1
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.9e-147 526.2 326 78.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 2.5e-147 525.8 313 83.1
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 3.3e-147 525.4 314 81.8
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 4.3e-147 525.0 321 77.9
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.2e-146 523.5 302 85.1
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.1e-146 522.7 320 80.6
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 3.6e-146 521.9 326 78.5
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.6e-146 521.9 317 78.9
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.8e-145 519.6 319 79.3
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 8.9e-145 517.3 320 77.8
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 3.4e-144 515.4 323 76.8
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 9.8e-144 513.8 325 75.7
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 2.5e-139 499.2 326 74.2
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.2e-138 494.6 336 73.2
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 1.1e-137 493.8 341 74.5
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 6.6e-132 474.6 313 74.4
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 5.2e-129 464.9 331 68.9
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 6.8e-129 464.5 249 93.2
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.2e-128 463.8 328 69.2
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 7.6e-128 461.1 321 70.1
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 3.5e-125 452.2 332 66.0
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 4.6e-125 451.8 250 87.6
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.6e-122 443.4 242 88.8
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.8e-122 442.6 247 86.2
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 2.0e-120 436.4 250 83.2
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 8.7e-116 421.0 364 63.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 6.2e-114 414.8 322 66.8
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 7.6e-112 407.9 317 65.3
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 9.9e-112 407.5 318 67.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.2e-111 406.4 299 69.2
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 2.7e-109 399.4 243 76.1
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 7.4e-99 364.8 319 59.2
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 8.2e-90 334.7 232 72.0
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 1.1e-89 334.3 198 81.3
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 4.5e-80 302.4 216 75.9
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 1.8e-73 280.4 319 49.2
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 5.7e-67 258.8 197 66.0
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.3e-66 257.7 267 49.8
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 5.3e-65 252.3 135 89.6
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 9.1e-65 251.5 346 45.4
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 3.5e-64 249.6 135 85.9
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.2e-59 234.6 232 53.4
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 4.1e-57 226.1 130 80.0
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.1e-45 187.2 125 75.2
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 6.1e-45 185.7 125 74.4
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 3.4e-43 179.9 120 75.0
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.3e-42 175.6 122 72.1
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.4e-41 173.7 118 73.7
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.4e-41 173.7 118 73.7
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 2.7e-40 170.2 118 72.0
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 6.6e-39 165.6 100 82.0
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 4.0e-36 156.4 199 51.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-34 150.2 162 49.4
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 3.0e-31 140.2 106 66.0
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 8.9e-28 128.6 88 71.6
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.9e-26 123.6 73 83.6
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 4.1e-25 119.8 198 45.5
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.5e-22 111.3 67 83.6
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 3.3e-22 110.2 80 67.5
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 3.1e-20 103.6 68 69.1
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 4.0e-20 103.2 61 83.6
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 1.3e-18 98.2 65 75.4
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 1.4e-17 94.7 77 57.1
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 9.2e-17 92.0 68 66.2
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.1e-13 80.9 47 76.6
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 3.4e-11 73.6 51 68.6
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 7.6e-11 72.4 50 72.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 1.2e-08 65.1 54 63.0
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 7.8e-08 62.4 60 58.3
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 3.9e-07 60.1 163 30.1
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 3.9e-07 60.1 164 28.7
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 3.3e-06 57.0 174 28.2


User provided reference genes

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