Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 0.0e+00 1405.2 712 100.0
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.9e-64 251.5 170 68.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 5.7e-61 240.0 159 66.7
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.3e-60 238.8 148 73.6
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.1e-59 235.7 148 73.0
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.7e-57 228.4 184 59.2
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.2e-57 228.0 197 57.9
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 2.9e-57 227.6 153 68.6
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 5.0e-57 226.9 175 62.3
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 5.0e-57 226.9 501 33.5
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 6.5e-57 226.5 186 57.0
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.1e-56 225.7 181 56.9
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 1.9e-56 224.9 181 56.9
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 5.5e-56 223.4 167 62.3
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 7.2e-56 223.0 181 58.0
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 9.4e-56 222.6 234 51.3
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 9.4e-56 222.6 183 59.0
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.2e-55 222.2 167 61.1
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.1e-55 221.5 362 38.4
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 2.7e-55 221.1 157 63.7
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 2.7e-55 221.1 170 58.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.6e-55 220.7 157 64.3
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 6.1e-55 219.9 165 61.2
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 8.0e-55 219.5 266 44.7
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 8.0e-55 219.5 157 64.3
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 8.0e-55 219.5 189 56.6
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.0e-54 219.2 163 64.4
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.4e-54 218.8 179 57.0
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.0e-54 217.2 157 63.7
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 4.0e-54 217.2 184 55.4
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 5.2e-54 216.9 163 63.8
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 6.8e-54 216.5 158 65.2
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 6.8e-54 216.5 158 65.2
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 6.8e-54 216.5 155 62.6
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 6.8e-54 216.5 189 54.5
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 8.8e-54 216.1 196 54.1
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 8.8e-54 216.1 196 54.1
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 8.8e-54 216.1 158 65.2
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.2e-53 215.7 204 54.4
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 2.0e-53 214.9 353 39.1
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.0e-53 214.9 230 51.3
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 3.4e-53 214.2 201 51.7
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 3.4e-53 214.2 154 63.0
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 4.4e-53 213.8 168 58.3
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 7.5e-53 213.0 161 60.9
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.7e-52 211.8 218 49.1
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 2.8e-52 211.1 163 60.1
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 3.7e-52 210.7 171 57.9
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 6.3e-52 209.9 162 61.7
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.1e-51 209.1 163 59.5
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.4e-51 208.0 201 51.2
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 2.4e-51 208.0 201 51.2
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 7.0e-51 206.5 171 57.9
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 9.1e-51 206.1 279 42.7
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.2e-50 205.7 151 62.3
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.2e-50 205.7 151 62.3
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.2e-50 205.7 179 56.4
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.6e-50 205.3 165 58.8
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.6e-50 205.3 165 58.8
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.6e-50 205.3 173 55.5
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.0e-50 204.9 153 63.4
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 3.5e-50 204.1 152 61.8
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 4.5e-50 203.8 158 62.0
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 4.5e-50 203.8 172 57.6
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 7.7e-50 203.0 192 53.6
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 7.7e-50 203.0 192 53.6
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 7.7e-50 203.0 192 53.6
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.7e-49 201.8 171 56.7
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 3.8e-49 200.7 201 51.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 3.8e-49 200.7 169 58.6
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 6.6e-49 199.9 153 57.5
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 8.6e-49 199.5 327 37.0
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.1e-48 199.1 169 56.2
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.1e-48 199.1 171 56.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.5e-48 198.7 166 56.6
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 4.2e-48 197.2 329 37.7
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 4.2e-48 197.2 175 54.9
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.7e-47 193.7 152 56.6
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.7e-47 193.7 156 57.1
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.1e-47 193.4 165 54.5
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 8.0e-47 193.0 152 57.2
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-46 191.8 152 57.9
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-46 191.8 152 57.9
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-46 191.8 152 57.9
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-46 191.8 152 57.9
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.2e-46 190.3 156 56.4
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 6.8e-46 189.9 186 52.2
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 7.5e-45 186.4 317 36.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.3e-44 185.7 152 53.9
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.7e-44 185.3 558 30.6
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 4.9e-44 183.7 146 56.8
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.8e-43 181.8 265 40.8
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.2e-42 179.1 154 53.2
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.2e-42 179.1 161 50.9
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.6e-42 178.7 180 48.9
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 3.5e-42 177.6 159 53.5
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.0e-41 176.0 144 54.9
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.5e-40 171.4 171 49.1
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 4.3e-40 170.6 156 51.9
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.3e-40 169.9 161 49.1
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 9.5e-40 169.5 164 50.0
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 6.1e-39 166.8 131 58.8
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 2.3e-38 164.9 273 42.5
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.5e-37 162.2 145 50.3
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 5.8e-37 160.2 155 50.3
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.3e-36 159.1 157 49.0
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 2.9e-36 157.9 136 52.9
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.9e-36 157.9 154 48.1
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 2.4e-35 154.8 189 47.6
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.2e-34 152.5 126 57.1
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 7.8e-34 149.8 154 50.6
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 3.0e-33 147.9 136 50.7
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.9e-32 145.2 134 50.7
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 9.5e-32 142.9 137 49.6
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.2e-31 142.5 152 45.4
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 2.1e-31 141.7 183 41.0
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.8e-30 138.7 260 38.8
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.8e-30 138.7 260 38.8
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 2.3e-30 138.3 98 63.3
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 6.8e-30 136.7 99 56.6
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.5e-29 135.6 102 60.8
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 9.8e-29 132.9 105 59.0
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 4.6e-26 124.0 121 48.8
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 7.8e-26 123.2 99 55.6
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 3.9e-25 120.9 97 55.7
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 5.1e-25 120.6 134 44.0
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 7.3e-24 116.7 147 44.2
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 3.1e-22 111.3 133 39.8
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 4.9e-20 104.0 105 48.6
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-19 102.4 76 59.2
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.4e-19 101.7 99 47.5
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 7.1e-19 100.1 83 56.6
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 7.8e-18 96.7 83 55.4
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.0e-17 96.3 213 38.5
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 2.3e-17 95.1 72 59.7
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 4.3e-16 90.9 55 69.1
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.2e-15 89.4 121 43.0
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.1e-15 88.6 65 61.5
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 2.1e-15 88.6 61 67.2
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.1e-14 86.3 77 51.9
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.4e-14 85.1 75 56.0
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 3.1e-14 84.7 92 45.7
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 5.2e-14 84.0 244 27.0
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 4.4e-13 80.9 111 42.3
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 3.2e-11 74.7 65 46.2
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.2e-10 72.8 70 54.3
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.0e-09 68.2 77 45.5
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 1.6e-07 62.4 84 40.5
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 6.9e-06 57.0 35 71.4


User provided reference genes

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