Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.3e-106 389.0 216 100.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.0e-78 296.2 248 70.2
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.1e-76 290.4 246 70.3
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 2.6e-73 279.3 250 65.2
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 3.5e-70 268.9 251 62.5
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.7e-69 266.5 253 59.7
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 3.3e-68 262.3 252 61.9
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 5.6e-68 261.5 250 60.8
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.2e-67 260.4 250 59.2
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.1e-67 259.6 249 57.4
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.8e-67 259.2 248 62.1
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 3.6e-67 258.8 251 60.6
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.7e-67 258.5 251 60.6
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.7e-67 258.5 250 60.8
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.7e-67 258.5 251 61.0
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 6.2e-67 258.1 213 63.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 8.0e-67 257.7 243 58.8
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.0e-66 257.3 254 61.8
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.0e-66 257.3 250 60.4
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.0e-66 257.3 251 61.8
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.4e-66 256.9 243 62.1
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 2.3e-66 256.1 251 60.6
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.3e-66 256.1 248 61.3
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.3e-66 256.1 251 60.6
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.3e-66 256.1 251 60.6
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 6.8e-66 254.6 250 60.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.0e-65 253.1 262 53.8
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 2.0e-65 253.1 252 59.1
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.4e-65 252.3 251 60.2
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 3.4e-65 252.3 251 58.6
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 5.8e-65 251.5 252 60.7
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 7.5e-65 251.1 252 58.7
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.3e-64 250.4 248 56.9
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 4.9e-64 248.4 248 60.5
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 6.4e-64 248.1 249 56.6
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 1.1e-63 247.3 252 59.9
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.4e-63 246.1 248 57.7
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.4e-63 246.1 252 55.6
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 3.2e-63 245.7 250 57.6
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 4.1e-63 245.4 252 59.1
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 5.4e-63 245.0 252 57.9
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 7.0e-63 244.6 261 54.8
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 9.2e-63 244.2 251 57.8
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 9.2e-63 244.2 251 57.0
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.2e-62 243.8 240 61.7
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.0e-62 243.0 254 57.9
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.7e-62 242.7 249 59.0
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 6.0e-62 241.5 250 58.0
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.3e-61 240.4 249 57.8
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.3e-61 240.4 251 56.2
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.7e-61 240.0 252 57.5
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.7e-61 240.0 249 57.4
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.7e-61 240.0 249 58.6
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.0e-61 239.2 252 56.3
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 3.9e-61 238.8 249 56.6
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.0e-61 238.4 246 57.3
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.1e-60 237.3 251 55.8
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.1e-60 237.3 256 57.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.9e-60 236.5 242 55.4
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.9e-60 236.5 249 57.4
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 3.3e-60 235.7 251 56.2
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 5.6e-60 235.0 263 52.5
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 7.3e-60 234.6 253 57.7
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.6e-59 233.4 252 57.9
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.6e-59 233.4 251 56.6
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 2.1e-59 233.0 252 56.0
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.1e-59 233.0 253 57.3
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 3.6e-59 232.3 274 49.3
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 6.2e-59 231.5 238 58.0
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 8.1e-59 231.1 252 57.1
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.1e-58 230.7 186 68.8
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.1e-58 230.7 253 56.5
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.1e-58 230.7 248 56.5
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.4e-58 230.3 250 56.4
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.3e-58 229.6 229 57.6
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 3.1e-58 229.2 252 56.3
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 4.0e-58 228.8 193 66.8
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 6.8e-58 228.0 246 54.5
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 8.9e-58 227.6 246 57.3
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 8.9e-58 227.6 244 53.7
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.5e-57 226.9 243 57.2
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.5e-57 226.9 202 59.4
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.0e-57 226.5 246 54.1
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 2.6e-57 226.1 201 58.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 4.4e-57 225.3 246 56.5
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 4.4e-57 225.3 251 55.4
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.4e-57 225.3 253 56.5
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 7.5e-57 224.6 237 57.0
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.3e-56 223.8 244 55.7
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.7e-56 223.4 237 54.4
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 2.2e-56 223.0 158 67.1
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 4.9e-56 221.9 206 58.7
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 6.4e-56 221.5 253 55.7
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.4e-55 220.3 190 57.9
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.9e-55 219.9 187 63.1
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 2.4e-55 219.5 268 53.0
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.1e-54 216.5 193 59.1
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 2.7e-54 216.1 237 54.0
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.5e-54 215.7 294 49.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 6.0e-54 214.9 236 54.2
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.3e-53 213.0 273 50.2
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 5.1e-53 211.8 241 52.7
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 5.1e-53 211.8 241 51.9
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 6.6e-53 211.5 234 53.8
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 6.6e-53 211.5 245 52.7
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.5e-52 210.3 248 52.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 4.3e-52 208.8 260 50.0
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 5.6e-52 208.4 235 58.3
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 5.6e-52 208.4 346 39.9
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.6e-51 206.8 235 57.9
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.8e-51 206.1 223 55.2
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 1.1e-50 204.1 244 52.9
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.8e-50 203.4 240 52.1
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 6.8e-50 201.4 252 48.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.5e-49 200.3 248 52.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.6e-46 188.7 130 71.5
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.0e-45 187.6 333 42.3
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.3e-45 187.2 198 52.0
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.2e-43 180.6 168 58.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.0e-42 175.6 243 45.7
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 8.9e-42 174.5 196 46.9
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 9.9e-41 171.0 242 49.6
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.6e-38 162.2 150 58.0
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.6e-38 162.2 144 64.6
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 4.8e-35 152.1 217 41.5
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 6.2e-35 151.8 220 43.2
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.7e-32 143.7 245 42.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.2e-32 143.3 148 54.1
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.1e-30 136.7 190 48.9
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 8.7e-29 131.3 136 54.4
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.3e-28 129.4 305 39.3
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 3.4e-25 119.4 126 53.2
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.9e-24 116.3 221 33.9
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 4.2e-23 112.5 110 62.7
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.2e-22 110.9 103 63.1
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 3.3e-20 102.8 256 34.4
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 4.8e-19 99.0 230 30.9
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.1e-19 98.2 58 74.1
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 2.9e-16 89.7 192 32.3
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 2.9e-08 63.2 153 34.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.9e-07 60.5 77 53.2
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.1e-06 57.0 90 38.9
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 3.6e-06 56.2 64 45.3
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 4.6e-06 55.8 44 56.8
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.6e-06 55.8 34 67.6
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 7.9e-06 55.1 44 54.5


User provided reference genes

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