Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 2.5e-144 515.4 257 100.0
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 3.8e-100 368.6 217 85.7
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 4.6e-93 345.1 236 75.0
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 1.5e-75 287.0 220 64.1
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.5e-75 286.2 218 65.6
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 1.8e-73 280.0 248 57.7
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 8.9e-73 277.7 226 62.4
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 3.4e-72 275.8 222 63.1
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 7.6e-72 274.6 223 63.7
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 6.4e-71 271.6 207 65.7
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 8.4e-71 271.2 225 61.8
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 5.4e-70 268.5 220 61.8
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.1e-70 268.1 227 59.0
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 1.6e-69 266.9 216 62.5
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 2.7e-69 266.2 218 62.4
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 2.7e-69 266.2 222 62.2
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 3.5e-69 265.8 221 62.0
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 4.6e-69 265.4 216 62.0
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 7.8e-69 264.6 219 59.8
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 1.0e-68 264.2 217 61.3
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.7e-68 263.5 218 61.5
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.3e-68 263.1 215 62.8
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 3.0e-68 262.7 215 61.9
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 8.6e-68 261.2 220 61.4
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 8.6e-68 261.2 215 59.1
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 8.6e-68 261.2 223 60.1
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 1.5e-67 260.4 226 58.4
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 1.9e-67 260.0 221 60.6
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 3.3e-67 259.2 217 61.3
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 4.3e-67 258.8 215 58.6
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 4.3e-67 258.8 223 58.7
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 4.3e-67 258.8 228 58.8
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 5.6e-67 258.5 215 58.1
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 5.6e-67 258.5 255 54.5
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 7.3e-67 258.1 217 59.9
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 9.6e-67 257.7 220 59.5
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.2e-66 257.3 215 61.9
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.6e-66 256.9 215 60.9
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.1e-66 256.5 217 59.4
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.8e-66 256.1 219 60.3
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 4.7e-66 255.4 215 60.9
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 8.1e-66 254.6 217 59.4
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 8.1e-66 254.6 220 59.1
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 8.1e-66 254.6 218 60.6
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-65 254.2 219 59.8
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 1.4e-65 253.8 205 61.5
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 1.8e-65 253.4 215 58.1
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 2.4e-65 253.1 215 59.1
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 2.4e-65 253.1 215 59.1
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 2.4e-65 253.1 220 60.0
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 3.1e-65 252.7 219 58.9
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 3.1e-65 252.7 215 58.6
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.1e-65 252.7 216 60.2
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 3.1e-65 252.7 220 57.7
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 4.0e-65 252.3 215 58.6
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 4.0e-65 252.3 215 58.6
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 4.0e-65 252.3 225 59.6
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 5.2e-65 251.9 226 59.3
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 5.2e-65 251.9 224 56.7
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 5.2e-65 251.9 224 56.7
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.9e-65 251.5 216 59.7
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 2.0e-64 250.0 218 58.3
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 2.0e-64 250.0 226 58.4
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.0e-64 250.0 219 57.5
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 7.6e-64 248.1 215 60.0
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 7.6e-64 248.1 280 49.6
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 7.6e-64 248.1 215 58.6
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 7.6e-64 248.1 220 58.2
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 1.3e-63 247.3 216 58.8
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.3e-63 247.3 216 58.3
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 1.3e-63 247.3 216 58.3
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 1.3e-63 247.3 216 58.3
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 2.2e-63 246.5 215 59.5
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 2.9e-63 246.1 215 58.1
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 2.9e-63 246.1 227 57.3
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 2.9e-63 246.1 240 54.6
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 3.8e-63 245.7 217 58.5
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 3.8e-63 245.7 221 57.5
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 3.8e-63 245.7 219 57.5
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 3.8e-63 245.7 225 56.0
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 4.9e-63 245.4 220 57.3
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 8.4e-63 244.6 220 56.8
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 1.4e-62 243.8 215 56.3
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 1.9e-62 243.4 215 60.0
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 2.4e-62 243.0 220 57.7
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 2.4e-62 243.0 215 55.8
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 4.2e-62 242.3 229 56.3
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 1.6e-61 240.4 221 57.5
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.7e-61 239.6 239 54.0
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 3.5e-61 239.2 219 56.2
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 4.6e-61 238.8 233 54.9
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.0e-61 238.4 216 57.4
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 7.8e-61 238.0 217 57.1
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 1.7e-60 236.9 219 54.8
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 3.0e-60 236.1 168 69.0
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 8.7e-60 234.6 208 57.7
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.3e-58 230.7 209 57.4
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.6e-58 230.3 206 56.8
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.6e-58 230.3 166 66.3
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 2.1e-58 229.9 216 55.1
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 2.1e-58 229.9 208 58.2
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 8.1e-58 228.0 171 64.9
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 1.4e-57 227.3 169 65.1
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 1.8e-57 226.9 239 51.9
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 9.0e-57 224.6 221 51.6
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 3.4e-56 222.6 189 58.2
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 3.4e-56 222.6 254 50.4
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 1.3e-55 220.7 150 69.3
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 4.9e-55 218.8 211 53.6
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 4.9e-55 218.8 176 60.8
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 8.4e-55 218.0 167 63.5
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 2.4e-54 216.5 214 53.3
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 2.1e-53 213.4 227 50.2
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 7.9e-53 211.5 131 71.8
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 1.0e-52 211.1 134 71.6
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 2.3e-52 209.9 217 50.7
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 1.1e-51 207.6 133 72.2
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 1.3e-50 204.1 133 69.9
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.8e-49 200.3 147 62.6
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 4.5e-48 195.7 244 46.3
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 6.7e-44 181.8 167 52.7
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 5.6e-43 178.7 221 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 2.4e-41 173.3 222 37.4
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.4e-41 173.3 145 58.6
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 1.1e-38 164.5 228 38.6
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.3e-35 152.5 108 64.8
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 2.1e-34 150.2 194 46.4
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 2.4e-33 146.7 194 46.4
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 1.4e-30 137.5 141 46.8
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 4.2e-30 136.0 96 65.6
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 7.2e-30 135.2 134 53.0
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 5.3e-25 119.0 214 36.0
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.7e-21 106.7 175 37.1
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 5.7e-19 99.0 88 51.1
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.5e-16 90.9 60 70.0
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 2.6e-16 90.1 64 67.2
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 2.9e-15 86.7 66 63.6
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 7.2e-14 82.0 121 33.9
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.2e-13 81.3 201 34.8
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 8.8e-12 75.1 69 50.7
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.1e-11 74.7 78 47.4
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 1.5e-11 74.3 96 42.7
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 1.7e-10 70.9 205 32.2
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 5.3e-09 65.9 68 54.4
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 5.9e-08 62.4 44 61.4
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 7.7e-08 62.0 107 36.4
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 1.7e-07 60.8 121 28.1
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-06 58.2 34 70.6
TPR.G14723 Trifolium pratense HOM05D004903 ORTHO05D005849 4.2e-06 56.2 48 62.5
arahy.Tifrunner.gnm1.ann1.ZRCJ38 Arachis hypogaea HOM05D004903 ORTHO05D005849 7.2e-06 55.5 65 50.8
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 9.4e-06 55.1 56 51.8


User provided reference genes

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