Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 9.0e-240 833.2 419 100.0
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 1.3e-161 573.5 383 78.6
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 1.5e-146 523.5 399 71.9
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 2.7e-135 486.1 354 69.8
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 2.0e-130 469.9 370 64.6
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 1.7e-129 466.8 376 63.6
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 2.5e-125 453.0 346 67.1
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 4.3e-125 452.2 298 72.5
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 2.8e-124 449.5 347 65.4
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 3.7e-124 449.1 367 63.8
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 1.4e-123 447.2 350 65.1
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 2.4e-123 446.4 347 65.4
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 2.0e-122 443.4 368 61.1
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 3.4e-122 442.6 298 70.1
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 3.4e-122 442.6 369 62.1
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 4.5e-122 442.2 379 60.9
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 5.8e-122 441.8 371 60.4
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 6.4e-121 438.3 378 61.1
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 6.4e-121 438.3 369 62.6
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 7.1e-120 434.9 314 66.6
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 1.2e-119 434.1 349 63.9
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 2.3e-118 429.9 372 60.2
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 8.7e-118 427.9 319 64.6
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 1.1e-117 427.6 350 62.6
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 4.3e-117 425.6 316 66.1
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 4.3e-117 425.6 316 66.1
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 4.3e-117 425.6 299 68.2
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 4.3e-117 425.6 383 59.5
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 7.4e-117 424.9 370 59.5
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 7.4e-117 424.9 380 59.2
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 1.6e-116 423.7 367 59.7
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 1.6e-116 423.7 318 64.2
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.6e-116 423.7 384 57.3
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 1.6e-116 423.7 314 65.0
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 2.8e-116 422.9 374 58.6
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 2.8e-116 422.9 318 64.2
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 3.7e-116 422.5 373 58.2
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 4.8e-116 422.2 372 58.3
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 4.8e-116 422.2 370 58.6
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 6.2e-116 421.8 374 58.3
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 1.4e-115 420.6 372 59.1
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 1.8e-115 420.2 350 60.6
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 1.8e-115 420.2 349 61.3
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 1.8e-115 420.2 312 65.1
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 2.4e-115 419.9 350 60.9
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 2.4e-115 419.9 377 57.6
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 2.4e-115 419.9 360 60.8
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.1e-115 419.5 360 58.9
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 4.0e-115 419.1 300 66.7
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 5.3e-115 418.7 380 57.4
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 5.3e-115 418.7 369 59.3
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 5.3e-115 418.7 380 56.8
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 6.9e-115 418.3 318 63.2
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 6.9e-115 418.3 370 59.5
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 1.5e-114 417.2 343 61.8
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 4.5e-114 415.6 340 60.6
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 4.5e-114 415.6 318 62.9
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 5.8e-114 415.2 381 58.0
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.0e-113 414.5 299 66.2
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 1.3e-113 414.1 349 61.0
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 1.7e-113 413.7 379 57.3
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 2.2e-113 413.3 307 64.8
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 2.9e-113 412.9 379 56.7
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 3.8e-113 412.5 357 59.1
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 4.9e-113 412.1 358 60.6
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 6.5e-113 411.8 298 66.4
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 6.5e-113 411.8 382 57.9
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.4e-112 410.6 401 54.9
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 3.5e-111 406.0 344 59.3
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 4.6e-111 405.6 321 62.0
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 7.9e-111 404.8 395 54.4
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 6.7e-110 401.7 300 64.0
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 1.3e-108 397.5 321 62.9
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 3.7e-108 396.0 381 55.4
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 4.1e-107 392.5 428 50.7
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 9.0e-107 391.3 288 67.4
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 1.2e-106 391.0 309 62.1
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 7.6e-106 388.3 371 57.4
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 2.5e-104 383.3 373 54.4
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 3.2e-104 382.9 323 59.1
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 1.6e-103 380.6 317 61.2
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 3.6e-103 379.4 272 68.0
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 4.6e-103 379.0 271 65.3
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 2.5e-101 373.2 341 55.7
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 7.4e-101 371.7 323 56.0
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 4.5e-98 362.5 310 56.8
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 1.0e-97 361.3 346 56.6
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 1.0e-97 361.3 335 58.2
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 1.3e-97 360.9 324 57.4
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 8.5e-97 358.2 382 52.4
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 5.5e-96 355.5 369 50.9
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.6e-95 352.8 348 56.6
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 6.3e-92 342.0 327 57.5
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 8.2e-92 341.7 290 59.3
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 2.4e-91 340.1 271 60.9
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 2.4e-91 340.1 324 55.2
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 1.4e-88 330.9 225 69.3
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 6.7e-86 322.0 318 51.9
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 4.1e-83 312.8 311 53.1
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 4.4e-77 292.7 315 46.7
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 8.2e-76 288.5 521 37.4
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 2.7e-74 283.5 266 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 1.7e-73 280.8 304 48.0
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 8.8e-70 268.5 303 44.9
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 3.4e-69 266.5 364 40.1
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 1.2e-61 241.5 218 57.8
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 2.9e-57 226.9 149 71.1
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 3.8e-57 226.5 149 71.8
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 3.7e-52 209.9 219 53.4
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 9.5e-48 195.3 197 53.3
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 4.7e-47 193.0 161 57.8
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 1.3e-41 174.9 163 55.2
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.9e-40 171.0 219 44.3
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 8.1e-39 165.6 134 58.2
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 6.8e-38 162.5 140 57.1
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 2.6e-37 160.6 168 51.8
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 2.6e-37 160.6 168 50.0
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 3.5e-34 150.2 180 46.1
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 4.6e-34 149.8 198 39.4
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.7e-26 124.0 89 66.3
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 3.9e-25 120.2 112 53.6
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 1.9e-24 117.9 208 35.1
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 3.1e-22 110.5 123 49.6
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 1.6e-10 71.6 39 76.9
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 1.6e-10 71.6 39 76.9
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 1.0e-09 68.9 99 42.4
MCO12G135 Micromonas commoda HOM05D002058 ORTHO05D003758 3.0e-09 67.4 115 33.0
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 1.1e-08 65.5 215 24.2
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 5.6e-08 63.2 31 80.6
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 9.6e-08 62.4 108 37.0
Mapoly0035s0139 Marchantia polymorpha HOM05D002058 ORTHO05D003758 6.2e-07 59.7 152 32.2
Peaxi162Scf00359g00118 Petunia axillaris HOM05D002058 ORTHO05D003758 1.4e-06 58.5 145 34.5
ECA232G2859 Erigeron canadensis HOM05D000436 ORTHO05D008174 2.4e-06 57.8 42 59.5
CAN.G347.5 Capsicum annuum HOM05D002058 ORTHO05D003758 3.1e-06 57.4 122 35.2
PGSC0003DMG400016553 Solanum tuberosum HOM05D002058 ORTHO05D003758 4.0e-06 57.0 145 35.2


User provided reference genes

Program Settings