Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 7.9e-84 313.9 180 100.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 3.6e-44 182.2 180 66.1
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 1.9e-37 159.8 169 58.6
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 1.0e-30 137.5 167 53.9
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 5.0e-30 135.2 170 57.6
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 1.5e-29 133.7 164 54.9
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.3e-27 126.3 176 46.6
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.8e-27 124.8 176 46.0
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.2e-26 124.0 176 46.0
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 2.6e-26 122.9 176 44.9
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 4.4e-26 122.1 181 44.8
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 1.3e-25 120.6 199 42.7
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 2.8e-25 119.4 189 46.6
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 4.9e-25 118.6 180 44.4
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 8.3e-25 117.9 167 47.3
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 8.3e-25 117.9 167 47.3
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 3.1e-24 115.9 176 45.5
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.2e-23 114.0 183 42.6
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 2.0e-23 113.2 185 44.9
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 1.0e-22 110.9 186 44.6
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 1.7e-22 110.2 162 46.3
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 2.3e-22 109.8 188 44.1
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 2.3e-22 109.8 178 47.2
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 6.6e-22 108.2 168 50.6
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 8.6e-22 107.8 165 52.1
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 8.6e-22 107.8 166 46.4
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 1.1e-21 107.5 164 42.7
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.5e-21 107.1 168 43.5
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.5e-21 107.1 168 43.5
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 3.3e-21 105.9 176 46.0
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 4.3e-21 105.5 167 44.9
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 5.6e-21 105.1 159 44.0
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 5.6e-21 105.1 165 42.4
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 9.5e-21 104.4 167 44.3
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.2e-20 104.0 159 46.5
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.6e-20 103.6 174 42.5
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.1e-20 103.2 161 41.6
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.1e-20 103.2 161 41.6
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 2.1e-20 103.2 157 49.7
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 2.1e-20 103.2 158 45.6
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 3.6e-20 102.4 164 49.4
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 8.0e-20 101.3 182 40.7
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 1.0e-19 100.9 184 40.2
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.0e-19 100.9 163 50.3
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-19 100.1 178 47.2
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.8e-19 100.1 178 47.2
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.8e-19 100.1 188 45.2
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 2.3e-19 99.8 177 49.7
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.0e-19 99.4 159 45.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 4.0e-19 99.0 167 43.7
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 4.0e-19 99.0 164 45.1
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 5.2e-19 98.6 167 47.9
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 5.2e-19 98.6 186 41.4
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 5.2e-19 98.6 165 40.0
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 5.2e-19 98.6 183 41.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 8.9e-19 97.8 176 40.9
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 8.9e-19 97.8 175 42.3
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 8.9e-19 97.8 178 39.9
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.2e-18 97.4 189 41.3
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.2e-18 97.4 189 41.3
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 1.5e-18 97.1 191 40.3
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.5e-18 97.1 174 42.5
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.6e-18 96.3 191 45.0
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.6e-18 96.3 173 39.9
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.4e-18 95.9 186 44.6
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 4.4e-18 95.5 186 44.1
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 7.5e-18 94.7 189 39.7
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 7.5e-18 94.7 191 40.3
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 1.7e-17 93.6 145 50.3
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.7e-17 93.6 187 38.5
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.9e-17 92.8 159 40.3
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 3.7e-17 92.4 183 42.1
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 4.9e-17 92.0 168 44.0
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.9e-17 92.0 176 39.2
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 6.4e-17 91.7 167 41.9
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 6.4e-17 91.7 167 41.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 8.3e-17 91.3 136 45.6
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.1e-16 90.9 164 40.2
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.8e-16 90.1 185 37.3
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 5.4e-16 88.6 172 39.0
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 5.4e-16 88.6 188 42.0
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 7.0e-16 88.2 167 39.5
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.2e-15 87.4 171 39.2
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.2e-15 87.4 192 37.5
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.2e-15 87.4 180 39.4
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 1.6e-15 87.0 181 37.6
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.6e-15 87.0 166 40.4
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 2.0e-15 86.7 181 42.0
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.0e-15 86.7 175 42.3
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 3.5e-15 85.9 194 41.8
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 4.6e-15 85.5 196 36.2
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 7.8e-15 84.7 196 39.8
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 7.8e-15 84.7 198 42.4
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.0e-14 84.3 185 35.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 3.0e-14 82.8 165 38.8
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 6.6e-14 81.6 186 40.3
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.1e-13 80.9 147 39.5
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 1.9e-13 80.1 178 37.6
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 2.5e-13 79.7 193 36.3
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 3.3e-13 79.3 178 36.5
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 4.3e-13 79.0 173 37.6
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 9.5e-13 77.8 202 33.2
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 9.5e-13 77.8 204 34.3
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 4.7e-12 75.5 149 47.0
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.8e-11 73.6 173 37.0
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.8e-11 73.6 173 37.0
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 3.1e-11 72.8 174 36.8
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 3.1e-11 72.8 219 35.2
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 4.0e-11 72.4 174 37.4
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 5.2e-11 72.0 99 42.4
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 5.2e-11 72.0 186 39.2
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.2e-10 70.9 172 37.8
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.2e-10 70.9 167 33.5
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.5e-10 70.5 170 40.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.5e-10 70.5 111 48.6
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 2.0e-10 70.1 122 45.9
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.6e-10 69.7 173 41.0
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.6e-10 69.7 159 34.6
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 4.4e-10 68.9 183 37.2
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 1.3e-09 67.4 180 33.3
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 2.2e-09 66.6 122 41.0
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 3.7e-09 65.9 87 47.1
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 4.9e-09 65.5 169 33.1
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.1e-08 64.3 87 46.0
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.9e-08 63.5 173 33.5
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.4e-08 63.2 36 83.3
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 3.2e-08 62.8 180 31.7
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 7.0e-08 61.6 177 31.6
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.6e-07 60.5 112 36.6
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.5e-07 59.3 112 38.4
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 7.8e-07 58.2 50 54.0
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-06 57.8 134 44.0
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-06 57.8 134 44.0
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.0e-06 57.8 134 44.0
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 6.6e-06 55.1 207 30.9


User provided reference genes

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