Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.3e-75 286.2 136 100.0
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 1.0e-51 206.8 138 73.2
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.6e-49 199.5 137 72.3
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 1.0e-43 180.3 117 73.5
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 1.4e-37 159.8 139 60.4
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 1.6e-36 156.4 142 59.9
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 1.6e-36 156.4 128 60.2
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 2.7e-36 155.6 135 56.3
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 7.9e-36 154.1 138 60.1
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 3.9e-35 151.8 125 57.6
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.1e-35 151.4 145 57.2
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 5.1e-35 151.4 145 57.2
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 5.1e-35 151.4 135 60.0
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 5.1e-35 151.4 109 67.9
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 5.6e-34 147.9 130 57.7
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 7.4e-34 147.5 142 58.5
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.6e-33 146.4 128 60.2
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 8.2e-33 144.1 135 56.3
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 1.4e-32 143.3 140 52.9
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.8e-32 142.9 133 54.9
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 2.4e-32 142.5 120 60.8
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 2.4e-32 142.5 119 59.7
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 3.1e-32 142.1 116 57.8
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 5.3e-32 141.4 124 57.3
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 5.3e-32 141.4 132 53.8
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 6.9e-32 141.0 120 60.8
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 9.0e-32 140.6 120 60.8
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.2e-31 140.2 141 53.2
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.2e-31 140.2 124 58.9
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 1.5e-31 139.8 137 57.7
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 2.0e-31 139.4 141 52.5
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 2.0e-31 139.4 120 56.7
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 2.6e-31 139.0 133 56.4
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 2.6e-31 139.0 139 55.4
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 4.5e-31 138.3 112 61.6
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 4.5e-31 138.3 139 53.2
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 4.5e-31 138.3 138 52.2
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 4.5e-31 138.3 128 52.3
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 4.5e-31 138.3 128 52.3
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 5.8e-31 137.9 138 53.6
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 5.8e-31 137.9 130 56.2
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 5.8e-31 137.9 136 53.7
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 7.6e-31 137.5 120 59.2
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 1.0e-30 137.1 138 52.2
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.3e-30 136.7 137 52.6
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.3e-30 136.7 119 59.7
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 1.3e-30 136.7 134 55.2
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 2.2e-30 136.0 138 53.6
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.2e-30 136.0 128 51.6
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 2.2e-30 136.0 124 57.3
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 2.9e-30 135.6 118 59.3
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 3.8e-30 135.2 129 55.8
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 3.8e-30 135.2 122 58.2
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 3.8e-30 135.2 137 56.2
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 4.9e-30 134.8 139 52.5
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 4.9e-30 134.8 139 52.5
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 4.9e-30 134.8 122 57.4
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 4.9e-30 134.8 95 69.5
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 4.9e-30 134.8 115 60.9
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 6.5e-30 134.4 138 52.9
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 8.4e-30 134.0 119 56.3
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 8.4e-30 134.0 124 56.5
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 8.4e-30 134.0 138 54.3
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.4e-29 133.3 138 51.4
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 1.4e-29 133.3 122 56.6
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 3.2e-29 132.1 143 51.0
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 4.2e-29 131.7 118 56.8
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 5.5e-29 131.3 119 53.8
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 7.1e-29 131.0 128 51.6
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 7.1e-29 131.0 121 55.4
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 9.3e-29 130.6 135 54.1
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.2e-28 130.2 130 50.8
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 1.6e-28 129.8 129 54.3
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 2.7e-28 129.0 122 56.6
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 3.5e-28 128.6 117 59.0
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 3.5e-28 128.6 120 59.2
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 1.0e-27 127.1 119 55.5
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 1.0e-27 127.1 129 54.3
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 1.0e-27 127.1 118 55.1
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 1.8e-27 126.3 110 60.9
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.8e-27 126.3 130 50.8
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 3.0e-27 125.6 110 57.3
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 5.1e-27 124.8 113 59.3
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 6.7e-27 124.4 123 54.5
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 6.7e-27 124.4 135 54.1
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 8.7e-27 124.0 98 65.3
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 8.7e-27 124.0 119 57.1
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 2.5e-26 122.5 135 51.9
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 4.3e-26 121.7 101 63.4
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 4.3e-26 121.7 122 52.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 4.3e-26 121.7 118 54.2
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 5.7e-26 121.3 116 56.9
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 7.4e-26 120.9 128 53.9
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 7.4e-26 120.9 128 53.9
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 1.3e-25 120.2 116 54.3
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.3e-25 120.2 129 50.4
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 2.2e-25 119.4 115 53.9
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 2.8e-25 119.0 114 57.9
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.3e-25 117.9 130 47.7
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 6.3e-25 117.9 121 55.4
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.4e-24 115.9 128 48.4
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 2.4e-24 115.9 137 48.9
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 4.1e-24 115.2 125 55.2
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 6.9e-24 114.4 86 66.3
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 6.9e-24 114.4 182 41.8
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 9.0e-24 114.0 130 49.2
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 3.4e-23 112.1 122 50.0
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.4e-23 112.1 153 42.5
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 3.4e-23 112.1 73 68.5
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 4.5e-23 111.7 107 56.1
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 4.5e-23 111.7 112 53.6
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.6e-23 110.9 154 46.1
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.3e-22 110.2 121 50.4
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 5.0e-22 108.2 89 60.7
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 1.9e-21 106.3 60 73.3
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 2.5e-21 105.9 102 58.8
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 7.2e-21 104.4 99 55.6
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.6e-20 103.2 115 50.4
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.6e-20 103.2 61 72.1
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.6e-20 103.2 112 51.8
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 1.6e-20 103.2 112 51.8
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 3.6e-20 102.1 62 67.7
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 6.1e-20 101.3 64 75.0
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.0e-19 100.5 74 64.9
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 1.8e-19 99.8 98 55.1
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 2.3e-19 99.4 107 50.5
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.3e-19 99.4 114 50.0
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.5e-18 96.7 65 70.8
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.9e-18 96.3 92 58.7
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 5.7e-18 94.7 73 64.4
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 2.2e-17 92.8 89 57.3
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 2.4e-16 89.4 133 42.9
Mapoly0152s0024 Marchantia polymorpha HOM05D004542 ORTHO05D005380 5.9e-15 84.7 100 41.0
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.0e-14 84.0 53 62.3
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 1.7e-14 83.2 53 62.3
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 3.8e-14 82.0 102 46.1
Carub.0002s1610 Capsella rubella HOM05D004542 ORTHO05D005380 5.0e-14 81.6 39 87.2
AagrBONN_evm.TU.Sc2ySwM_228.5417 Anthoceros agrestis HOM05D004542 ORTHO05D005380 4.2e-13 78.6 57 63.2
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 1.2e-12 77.0 103 51.5
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 7.9e-12 74.3 49 65.3
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.0e-11 73.9 135 39.3
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 4.4e-10 68.6 95 43.2
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 4.4e-10 68.6 90 43.3
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 1.3e-09 67.0 38 73.7
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 4.1e-08 62.0 37 75.7
COL.COLO4_27991 Corchorus olitorius HOM05D004542 ORTHO05D005380 1.2e-07 60.5 104 43.3
MCO02G272 Micromonas commoda HOM05D004542 ORTHO05D005380 2.2e-06 56.2 51 47.1
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 3.8e-06 55.5 87 40.2


User provided reference genes

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