Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 0.0e+00 1179.9 567 100.0
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 0.0e+00 1114.4 567 94.2
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 0.0e+00 1109.4 567 93.7
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 0.0e+00 1078.2 556 91.0
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 0.0e+00 1077.4 558 90.9
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 3.8e-310 1067.4 563 89.5
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 564 89.2
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 2.7e-303 1044.6 564 89.0
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 565 87.1
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 565 86.4
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 565 86.9
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 565 87.1
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 5.7e-298 1026.9 567 87.1
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 7.5e-298 1026.5 565 86.9
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 565 86.5
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 6.3e-297 1023.5 566 86.7
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 564 85.6
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 565 85.7
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 4.1e-296 1020.8 564 86.5
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 565 86.4
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.7e-295 1018.1 562 86.8
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 562 86.3
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 565 85.8
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 565 85.5
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 565 85.8
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 8.6e-294 1013.1 564 85.8
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 8.6e-294 1013.1 568 85.2
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 2.5e-293 1011.5 565 86.0
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 7.3e-293 1010.0 565 85.7
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 7.3e-293 1010.0 565 85.0
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 565 85.0
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 562 85.6
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 562 85.8
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 565 85.0
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 6.1e-292 1006.9 565 84.8
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.0e-291 1006.1 565 84.6
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 565 85.3
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.3e-291 1005.0 564 86.0
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 6.8e-291 1003.4 565 84.8
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.2e-290 1002.7 564 85.1
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 564 84.6
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 564 85.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 2.6e-290 1001.5 564 84.9
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.7e-289 998.8 565 83.7
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.7e-289 998.8 565 83.9
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 8.3e-289 996.5 567 85.0
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-288 996.1 564 84.0
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 1.1e-288 996.1 564 84.0
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.4e-288 995.7 565 85.0
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.9e-288 995.3 563 84.5
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 4.1e-288 994.2 567 84.8
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 3.5e-287 991.1 562 84.5
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 4.6e-287 990.7 565 82.1
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.0e-287 990.3 565 83.7
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 7.8e-287 989.9 565 84.4
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 7.8e-287 989.9 565 84.4
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.0e-286 989.6 562 83.6
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.7e-286 988.8 565 83.9
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 8.6e-286 986.5 564 84.4
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.5e-285 985.7 565 83.2
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 3.3e-285 984.6 565 84.1
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 4.3e-285 984.2 566 83.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 9.5e-285 983.0 564 83.5
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.2e-284 982.6 564 83.5
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.6e-284 982.2 565 84.2
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.4e-283 979.2 564 83.5
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.1e-283 978.0 565 81.2
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 4.0e-283 977.6 551 84.2
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 5.2e-283 977.2 564 83.3
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 8.9e-283 976.5 565 82.3
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.2e-282 976.1 569 81.5
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.6e-282 974.9 565 81.6
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 5.8e-282 973.8 563 82.9
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 6.4e-281 970.3 563 82.6
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 8.3e-281 969.9 563 82.4
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 8.3e-281 969.9 563 82.2
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.4e-280 969.1 563 82.4
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-280 969.1 563 82.4
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-280 969.1 563 82.4
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.4e-280 969.1 565 81.2
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 2.4e-280 968.4 563 81.7
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 3.2e-280 968.0 563 82.2
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 9.2e-280 966.5 563 81.9
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 9.2e-280 966.5 563 81.3
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.2e-279 966.1 565 80.5
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-279 966.1 567 81.3
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-279 965.3 563 81.9
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 3.5e-279 964.5 563 81.5
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 4.6e-279 964.1 563 80.8
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 4.6e-279 964.1 551 82.8
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 6.0e-279 963.8 565 80.7
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 6.0e-279 963.8 563 81.7
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 7.8e-279 963.4 553 82.5
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.0e-278 963.0 564 82.4
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-278 962.6 563 81.7
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.3e-278 962.6 567 81.0
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.3e-278 962.6 567 81.0
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.7e-278 962.2 563 81.5
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 6.6e-278 960.3 563 81.3
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 6.6e-278 960.3 563 81.3
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.6e-278 959.9 550 82.9
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 2.5e-277 958.4 563 81.3
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 3.3e-277 958.0 551 83.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 3.3e-277 958.0 563 81.3
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.3e-277 957.6 550 82.9
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 2.1e-276 955.3 561 82.0
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 4.0e-275 951.0 563 79.9
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 8.9e-275 949.9 561 81.6
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 3.4e-274 948.0 563 80.1
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.7e-273 945.7 534 83.5
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 4.9e-273 944.1 565 80.5
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 6.4e-273 943.7 566 79.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.2e-272 941.4 565 80.4
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 4.1e-272 941.0 566 78.3
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.2e-271 939.5 562 79.9
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 4.6e-271 937.6 562 80.6
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.3e-265 919.5 571 76.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.8e-265 917.9 564 79.3
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.4e-264 914.1 565 77.0
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.2e-263 912.9 565 76.1
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.1e-262 907.5 567 76.7
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-261 906.4 565 76.3
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-261 904.8 523 82.2
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.6e-260 902.5 550 77.6
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 2.1e-260 902.1 559 76.2
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 6.2e-260 900.6 563 77.4
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.3e-259 897.5 562 76.2
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 2.6e-258 895.2 554 76.4
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 9.9e-258 893.3 565 75.2
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.4e-257 890.6 554 75.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.2e-256 887.9 564 74.5
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.7e-254 882.5 568 74.3
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.5e-253 879.4 557 75.6
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.4e-250 868.2 565 74.2
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 2.9e-241 838.6 566 72.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 2.3e-238 828.9 566 72.1
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 8.7e-238 827.0 566 70.1
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 2.8e-236 822.0 558 73.7
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.4e-232 809.7 471 79.4
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.2e-218 763.5 425 86.8
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.7e-207 724.9 563 65.2
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.3e-204 716.8 425 79.8
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 2.8e-204 715.7 564 64.5
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.3e-182 642.9 373 80.2
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.6e-175 619.0 541 54.7
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.3e-164 583.9 522 52.3
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.6e-162 575.5 498 53.4
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 4.7e-159 565.5 418 69.1
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.2e-154 550.8 329 77.2
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 6.2e-151 538.5 292 83.2
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.3e-143 514.2 418 57.4
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 3.2e-131 473.0 304 73.7
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.8e-129 467.2 564 47.9
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.5e-128 463.4 564 47.7
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 7.1e-123 445.3 467 53.1
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 6.3e-87 325.9 548 39.4
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.1e-86 323.2 213 73.7
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 2.3e-81 307.4 490 35.9
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.3e-65 254.2 153 75.8
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-63 248.4 153 73.9
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 7.8e-61 239.2 166 68.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 4.3e-51 206.8 117 84.6
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.1e-49 202.2 133 75.9
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.7e-47 194.9 136 72.8
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 8.6e-44 182.6 166 60.8
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-43 180.6 166 60.8
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 5.6e-43 179.9 166 60.8
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.6e-42 177.2 131 65.6
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 6.2e-42 176.4 166 60.2
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.8e-40 169.9 318 32.7
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.6e-32 144.4 494 26.3
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.2e-31 141.4 87 70.1
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 2.7e-29 134.4 212 39.6
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.7e-28 131.7 91 68.1
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 2.3e-28 131.3 76 73.7
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.0e-24 118.2 85 61.2
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.1e-22 112.5 183 40.4
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-20 105.5 166 42.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.1e-17 95.9 59 67.8
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 2.3e-12 78.2 46 69.6


User provided reference genes

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