Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 9.7e-101 370.2 189 100.0
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 6.1e-79 297.7 190 78.4
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.3e-73 280.0 192 74.0
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 4.4e-69 265.0 195 70.8
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 5.8e-69 264.6 192 70.8
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.6e-66 256.5 188 68.6
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.7e-66 255.8 185 69.7
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 4.6e-66 255.0 189 67.2
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 6.0e-66 254.6 185 68.6
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.8e-66 254.2 188 67.6
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.8e-66 254.2 188 67.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.0e-65 253.8 188 67.6
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.3e-65 253.4 189 67.7
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.3e-65 253.4 189 67.7
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.3e-65 252.7 188 67.0
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 3.9e-65 251.9 189 67.2
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.0e-65 251.5 189 67.2
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 6.6e-65 251.1 186 67.2
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.9e-64 249.6 189 67.7
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 1.9e-64 249.6 188 66.5
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.5e-64 249.2 182 68.1
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.5e-64 249.2 187 67.4
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.5e-64 249.2 188 66.0
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.5e-64 249.2 188 66.5
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 3.3e-64 248.8 189 65.1
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 3.3e-64 248.8 187 66.8
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 5.6e-64 248.1 189 67.7
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 9.5e-64 247.3 187 65.2
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 9.5e-64 247.3 189 65.6
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 9.5e-64 247.3 189 65.6
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-63 246.9 189 65.6
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.1e-63 246.1 185 65.9
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.8e-63 245.7 189 64.6
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.8e-63 245.7 188 65.4
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.8e-63 245.7 181 67.4
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.8e-63 245.7 188 65.4
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.7e-63 245.0 189 65.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.1e-62 243.8 189 65.1
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.4e-62 243.4 189 65.1
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.8e-62 243.0 188 66.0
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.3e-62 242.7 188 64.9
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 2.3e-62 242.7 191 65.4
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 3.1e-62 242.3 187 64.7
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 6.8e-62 241.1 187 64.7
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 6.8e-62 241.1 187 64.7
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 6.8e-62 241.1 188 64.9
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.2e-61 240.4 188 62.8
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 1.2e-61 240.4 188 64.4
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 1.5e-61 240.0 169 69.2
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.5e-61 240.0 169 69.2
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.0e-61 239.6 181 64.1
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.0e-61 239.6 188 62.8
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.6e-61 239.2 188 63.3
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 2.6e-61 239.2 181 64.6
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.4e-61 238.4 185 63.8
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 7.5e-61 237.7 188 63.3
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 7.5e-61 237.7 189 63.5
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 1.3e-60 236.9 187 63.1
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.7e-60 236.5 187 63.1
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.7e-60 236.5 169 67.5
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.7e-60 236.5 180 63.9
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.2e-60 236.1 188 62.2
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.2e-60 236.1 181 64.6
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 2.9e-60 235.7 188 62.2
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 3.7e-60 235.3 169 67.5
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 4.9e-60 235.0 186 64.5
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 8.3e-60 234.2 187 63.1
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 8.3e-60 234.2 188 61.7
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.4e-59 233.4 190 64.7
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.9e-59 233.0 169 67.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.9e-59 233.0 182 62.6
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.9e-59 233.0 184 65.2
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 2.4e-59 232.6 169 67.5
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.4e-59 232.6 203 59.6
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.2e-59 232.3 182 62.6
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.2e-59 232.3 187 63.6
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 4.1e-59 231.9 187 62.6
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 5.4e-59 231.5 189 63.5
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 5.4e-59 231.5 169 65.7
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 5.4e-59 231.5 169 65.7
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 5.4e-59 231.5 174 66.7
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 7.0e-59 231.1 169 66.3
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 7.0e-59 231.1 188 62.8
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.0e-59 231.1 182 62.6
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-58 230.3 191 62.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-58 230.3 191 63.4
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 1.2e-58 230.3 186 63.4
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.2e-58 230.3 187 63.1
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.1e-58 229.6 182 62.1
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.7e-58 229.2 191 61.8
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.7e-58 229.2 188 60.6
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 4.6e-58 228.4 226 54.4
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 6.0e-58 228.0 192 61.5
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 1.0e-57 227.3 186 61.8
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.0e-57 227.3 181 63.0
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.3e-57 226.9 188 60.1
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.7e-57 226.5 189 60.3
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.3e-57 226.1 192 60.9
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 3.9e-57 225.3 172 64.5
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 6.6e-57 224.6 172 62.8
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 8.6e-57 224.2 177 61.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.9e-56 223.0 188 61.2
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.9e-56 223.0 189 60.8
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 1.9e-56 223.0 187 62.6
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.9e-56 223.0 166 65.1
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.9e-56 223.0 187 63.6
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 3.3e-56 222.2 172 62.8
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 3.3e-56 222.2 180 62.8
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.3e-56 221.9 180 60.6
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 7.3e-56 221.1 188 58.0
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 9.5e-56 220.7 170 64.1
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 2.1e-55 219.5 172 63.4
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 8.1e-55 217.6 171 64.3
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 6.8e-54 214.5 170 61.8
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 6.8e-54 214.5 170 61.8
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 6.8e-54 214.5 174 61.5
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 1.5e-53 213.4 169 63.3
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.6e-53 212.6 195 58.5
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 4.4e-53 211.8 194 57.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 7.5e-53 211.1 190 57.4
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 9.9e-53 210.7 153 66.0
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 3.7e-52 208.8 174 61.5
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 4.9e-52 208.4 195 55.4
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 6.4e-52 208.0 178 58.4
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 1.4e-51 206.8 155 63.9
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.4e-51 206.1 183 59.0
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.2e-51 205.7 175 58.9
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 1.2e-50 203.8 189 56.6
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.7e-50 202.6 175 56.0
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 2.3e-49 199.5 148 65.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.0e-49 199.1 175 57.7
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.5e-48 196.1 153 61.4
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 9.5e-48 194.1 168 59.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 3.6e-47 192.2 149 64.4
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 4.7e-47 191.8 208 51.0
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 1.1e-46 190.7 171 58.5
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.4e-46 190.3 193 52.8
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 7.1e-43 177.9 156 56.4
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.1e-42 176.4 171 52.0
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 2.7e-42 176.0 169 54.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.7e-41 173.3 167 53.9
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 6.6e-41 171.4 171 57.3
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.9e-40 169.9 168 53.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 3.3e-40 169.1 176 51.7
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.6e-39 166.8 144 55.6
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 6.9e-38 161.4 171 48.5
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 9.0e-38 161.0 167 52.1
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 2.9e-36 156.0 108 66.7
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 3.5e-34 149.1 171 47.4
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.0e-33 147.5 159 45.3
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 5.6e-32 141.7 171 45.6
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.3e-31 140.6 171 45.0
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.1e-31 139.8 186 43.5
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.5e-29 132.1 129 52.7
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 3.3e-24 115.9 184 37.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 6.2e-23 111.7 107 52.3
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 1.8e-14 83.6 177 33.3
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 5.8e-13 78.6 109 44.0
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 3.0e-09 66.2 129 31.8
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.5e-08 63.9 176 31.2
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 1.8e-06 57.0 223 25.1
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 6.9e-06 55.1 221 24.9
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 9.0e-06 54.7 169 30.2


User provided reference genes

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