Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.3e-138 496.5 282 100.0
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 4.4e-97 358.6 219 83.1
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 5.7e-97 358.2 217 82.0
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.6e-91 340.1 216 81.5
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.6e-91 340.1 216 81.5
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 9.5e-76 287.7 216 69.0
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.6e-75 287.0 217 68.2
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.1e-75 286.6 217 68.2
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.8e-75 286.2 218 67.4
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 3.6e-75 285.8 219 68.5
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 3.6e-75 285.8 218 68.8
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.4e-74 283.9 218 68.8
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 1.8e-74 283.5 217 68.7
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 5.2e-74 282.0 218 67.0
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 6.8e-74 281.6 217 65.9
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 6.8e-74 281.6 218 67.0
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 6.8e-74 281.6 218 66.5
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 8.9e-74 281.2 217 66.8
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 2.9e-72 276.2 219 65.3
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.3e-69 267.3 219 64.8
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 2.3e-69 266.5 218 64.7
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 6.6e-69 265.0 218 63.3
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 8.6e-69 264.6 218 64.7
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 1.5e-68 263.8 218 64.2
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 2.5e-68 263.1 218 64.7
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 5.6e-68 261.9 218 63.8
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 7.3e-68 261.5 219 62.1
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.1e-67 260.0 218 64.2
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 3.6e-67 259.2 218 63.3
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 4.7e-67 258.8 181 71.8
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 8.0e-67 258.1 219 62.6
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.4e-66 257.3 218 61.9
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.4e-66 257.3 218 62.4
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.4e-66 257.3 218 62.4
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.4e-66 257.3 216 67.1
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 3.1e-66 256.1 194 66.0
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 3.1e-66 256.1 168 76.8
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.1e-66 256.1 205 64.4
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 5.2e-66 255.4 217 61.8
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 5.2e-66 255.4 219 63.0
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 8.9e-66 254.6 219 60.7
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 4.4e-65 252.3 200 65.5
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 5.8e-65 251.9 218 62.4
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 5.8e-65 251.9 198 65.7
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 7.5e-65 251.5 207 63.8
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 7.5e-65 251.5 208 64.4
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 9.8e-65 251.1 220 60.0
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.2e-64 250.0 211 63.5
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 1.1e-63 247.7 220 59.1
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.9e-63 246.9 208 63.0
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.9e-63 246.9 218 60.6
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.2e-63 246.1 219 58.9
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.2e-63 246.1 219 60.3
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 3.2e-63 246.1 219 61.2
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.2e-62 244.2 180 67.8
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.6e-62 243.8 219 59.8
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.6e-62 243.8 220 60.5
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.0e-62 243.4 222 58.6
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 2.0e-62 243.4 221 59.3
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.0e-62 243.4 220 59.5
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 7.8e-62 241.5 222 58.6
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 7.8e-62 241.5 218 60.6
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 2.3e-61 240.0 217 59.0
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 3.0e-61 239.6 195 62.1
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 3.0e-61 239.6 195 61.5
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.9e-61 239.2 217 59.9
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 5.0e-61 238.8 180 68.3
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 5.0e-61 238.8 198 62.6
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 5.0e-61 238.8 210 61.9
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 5.0e-61 238.8 198 61.6
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.1e-60 237.7 193 63.7
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 1.1e-60 237.7 216 61.1
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.1e-60 237.7 220 57.7
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.1e-60 237.7 221 58.8
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.9e-60 236.9 207 61.4
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 2.5e-60 236.5 222 57.7
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 3.3e-60 236.1 199 63.8
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.3e-60 236.1 178 66.3
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 4.3e-60 235.7 220 59.5
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 7.3e-60 235.0 199 63.8
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 9.5e-60 234.6 219 57.1
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 2.1e-59 233.4 209 60.8
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.1e-58 231.1 194 60.3
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 1.4e-58 230.7 219 56.6
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.4e-58 230.7 218 56.0
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 2.3e-58 229.9 212 60.8
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 2.3e-58 229.9 221 59.3
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 8.9e-58 228.0 219 57.1
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 2.0e-57 226.9 208 59.1
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 2.6e-57 226.5 222 59.9
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 3.4e-57 226.1 203 58.1
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 4.4e-57 225.7 211 58.3
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 5.8e-57 225.3 217 55.8
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 2.2e-56 223.4 201 59.7
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 2.2e-56 223.4 224 54.9
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 6.4e-56 221.9 165 66.7
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.2e-55 219.5 202 58.9
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 5.4e-55 218.8 208 57.2
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 7.1e-55 218.4 222 57.7
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 9.2e-55 218.0 213 57.7
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 2.1e-54 216.9 223 54.3
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 2.1e-54 216.9 220 57.3
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 3.5e-54 216.1 200 57.5
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.7e-53 213.8 204 59.3
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 3.0e-53 213.0 156 70.5
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 3.9e-53 212.6 156 70.5
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 3.9e-53 212.6 156 70.5
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 5.1e-53 212.2 156 70.5
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 5.1e-53 212.2 156 70.5
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 5.1e-53 212.2 156 70.5
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 6.6e-53 211.8 156 69.9
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 8.6e-53 211.5 156 69.9
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 8.6e-53 211.5 207 58.0
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 1.5e-52 210.7 212 57.1
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 7.3e-52 208.4 222 55.0
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-51 207.6 226 52.2
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 8.1e-51 204.9 210 56.7
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.4e-50 204.1 218 53.7
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 5.2e-50 202.2 132 78.8
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 2.0e-49 200.3 212 55.7
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 3.4e-49 199.5 183 57.4
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 4.4e-49 199.1 161 62.7
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.3e-48 197.6 152 67.8
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 4.9e-48 195.7 206 52.9
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.4e-47 193.4 152 67.1
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 5.4e-47 192.2 158 63.3
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.1e-46 190.3 162 63.6
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 7.8e-46 188.3 211 51.2
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 7.8e-46 188.3 211 51.2
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.7e-45 187.2 220 48.6
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 3.9e-45 186.0 200 52.5
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 8.6e-45 184.9 151 62.3
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 1.5e-44 184.1 200 52.0
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.5e-44 183.3 220 48.6
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.9e-40 169.9 157 59.2
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.4e-39 167.5 178 52.8
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 7.1e-39 165.2 125 65.6
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.6e-38 164.1 170 53.5
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 8.7e-37 158.3 110 71.8
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 9.0e-34 148.3 142 57.7
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.7e-32 144.1 100 74.0
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.9e-31 140.6 120 62.5
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 2.4e-31 140.2 141 53.2
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.5e-30 136.3 151 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.3e-29 133.7 189 41.8
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 7.4e-28 128.6 106 61.3
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 7.4e-28 128.6 121 57.9
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 4.0e-26 122.9 164 43.9
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 2.1e-19 100.5 79 67.1
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 6.2e-19 99.0 66 74.2
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 2.2e-16 90.5 67 68.7
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 9.3e-15 85.1 109 40.4
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.1e-14 84.0 62 67.7
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 4.6e-14 82.8 95 51.6
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 4.6e-14 82.8 95 51.6
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 1.9e-12 77.4 105 37.1
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 6.9e-10 68.9 103 38.8
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 3.4e-09 66.6 70 52.9


User provided reference genes

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