Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 1.1e-81 306.6 155 100.0
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 4.1e-57 224.9 153 79.7
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 8.1e-53 210.7 157 73.2
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 5.2e-52 208.0 158 74.1
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-47 193.0 121 78.5
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.3e-47 192.6 157 66.9
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.6e-47 191.0 121 77.7
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.6e-47 191.0 121 77.7
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.6e-47 191.0 121 77.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 3.3e-46 188.7 150 68.7
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 2.1e-45 186.0 168 60.1
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 3.6e-45 185.3 150 67.3
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 4.8e-45 184.9 143 69.2
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 6.2e-45 184.5 172 63.4
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 8.1e-45 184.1 176 61.9
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.4e-44 183.3 149 66.4
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 1.4e-44 183.3 150 67.3
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.8e-44 183.0 171 60.8
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 2.4e-44 182.6 122 75.4
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.1e-44 182.2 150 66.7
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.1e-44 182.2 158 65.8
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.0e-44 181.8 149 67.1
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.0e-44 181.8 160 61.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 5.3e-44 181.4 177 59.3
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 5.3e-44 181.4 152 67.1
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 5.3e-44 181.4 151 66.9
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 6.9e-44 181.0 145 66.9
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 6.9e-44 181.0 148 67.6
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.2e-43 180.3 165 60.0
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.5e-43 179.9 168 60.7
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.6e-43 179.1 160 62.5
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 3.4e-43 178.7 153 66.0
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 3.4e-43 178.7 157 65.6
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.4e-43 178.3 150 66.7
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 4.4e-43 178.3 133 70.7
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 4.4e-43 178.3 115 77.4
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 5.8e-43 177.9 153 66.0
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 5.8e-43 177.9 149 66.4
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 5.8e-43 177.9 152 65.1
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 7.6e-43 177.6 149 66.4
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 7.6e-43 177.6 149 66.4
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 7.6e-43 177.6 154 64.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 9.9e-43 177.2 170 60.0
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 9.9e-43 177.2 154 64.3
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 9.9e-43 177.2 154 64.3
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-42 176.4 153 65.4
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-42 176.4 153 65.4
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.7e-42 176.4 153 65.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.7e-42 176.4 153 65.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 1.7e-42 176.4 176 59.7
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.2e-42 176.0 174 59.8
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 2.9e-42 175.6 147 64.6
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.9e-42 175.6 114 76.3
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 3.8e-42 175.3 147 63.9
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.8e-42 175.3 152 65.8
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 4.9e-42 174.9 160 60.6
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.9e-42 174.9 160 60.6
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.9e-42 174.9 160 60.6
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 4.9e-42 174.9 173 57.8
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 8.4e-42 174.1 113 77.0
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.1e-41 173.7 113 77.9
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.1e-41 173.7 122 69.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.9e-41 172.9 160 60.6
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.9e-41 172.9 160 62.5
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.4e-41 172.6 163 58.3
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 4.2e-41 171.8 167 56.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.2e-41 171.8 160 60.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 5.4e-41 171.4 162 58.6
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 9.3e-41 170.6 154 64.3
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 9.3e-41 170.6 113 75.2
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 9.3e-41 170.6 154 59.1
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.2e-40 170.2 122 69.7
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.2e-40 170.2 159 61.0
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.6e-40 169.9 145 64.8
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.6e-40 169.9 160 59.4
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.1e-40 169.5 145 64.1
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 3.5e-40 168.7 144 63.9
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 4.6e-40 168.3 114 71.9
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 7.8e-40 167.5 163 57.7
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.0e-39 167.2 130 67.7
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.0e-39 165.6 113 73.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.1e-39 164.9 162 58.6
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.6e-39 164.5 132 65.2
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 8.7e-39 164.1 153 62.1
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 8.7e-39 164.1 156 60.9
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 8.7e-39 164.1 156 60.3
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 8.7e-39 164.1 156 60.3
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 8.7e-39 164.1 156 60.3
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.1e-38 163.7 152 61.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.5e-38 163.3 157 63.1
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.5e-38 163.3 163 58.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.9e-38 162.9 113 70.8
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.5e-38 162.5 170 59.4
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.5e-38 162.5 112 71.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 4.3e-38 161.8 166 57.8
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 7.3e-38 161.0 140 62.1
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 9.6e-38 160.6 140 61.4
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.1e-37 159.5 158 59.5
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 2.8e-37 159.1 199 47.7
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.6e-37 158.7 161 56.5
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 2.4e-36 156.0 180 54.4
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.1e-36 155.6 159 54.1
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.2e-34 149.4 157 55.4
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.8e-34 148.7 130 61.5
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.4e-33 146.7 157 54.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.2e-32 143.7 162 53.1
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 4.6e-32 141.7 80 85.0
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.8e-31 139.8 158 56.3
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.8e-31 139.8 162 54.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 3.0e-31 139.0 113 64.6
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 8.7e-31 137.5 164 50.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.1e-30 137.1 142 55.6
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 9.6e-30 134.0 160 51.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 3.7e-29 132.1 162 53.7
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.4e-28 130.2 161 47.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.8e-28 129.8 168 49.4
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.4e-28 129.4 165 50.3
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 4.0e-28 128.6 115 57.4
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 5.3e-28 128.3 79 74.7
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 6.9e-28 127.9 79 73.4
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.5e-27 126.7 87 71.3
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 4.9e-26 121.7 263 37.6
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 5.5e-25 118.2 169 43.2
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.1e-24 116.3 148 49.3
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.9e-24 114.4 158 43.7
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.9e-24 114.4 158 43.7
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.3e-23 112.8 163 42.9
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 4.3e-22 108.6 61 86.9
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.6e-21 106.7 76 71.1
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 2.1e-21 106.3 147 48.3
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.8e-21 105.1 154 41.6
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 9.0e-20 100.9 101 49.5
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.5e-19 100.1 153 39.9
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 2.0e-19 99.8 93 50.5
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.5e-19 98.6 61 78.7
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.5e-19 98.6 61 78.7
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.0e-18 97.4 154 39.6
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.9e-18 95.9 85 52.9
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 6.5e-18 94.7 70 58.6
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 9.3e-17 90.9 54 79.6
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 9.3e-17 90.9 130 47.7
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 1.2e-16 90.5 71 64.8
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 2.9e-10 69.3 40 82.5
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.6e-08 63.5 40 75.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 2.5e-06 56.2 63 49.2


User provided reference genes

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